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ACD3_54

Alias: ACD3_9.31982.74

Search features with annotation key words

Displaying items 1-30 of 31 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD3_54_1
unknown

Not on your lists

comp(2..793)
DNA (792bp) protein (264aa)
secF; preprotein translocase subunit SecF
Protein-export membrane protein SecF n=1 Tax=Dethiosulfovibrio peptidovorans DSM 11002 RepID=D2Z8Y1_9BACT (db=UNIREF evalue=1.0e-14 bit_score=84.0 identity=29.79 coverage=72.7272727272727)
transmembrane_regions (db=TMHMM db_id=tmhmm from=213 to=235)
transmembrane_regions (db=TMHMM db_id=tmhmm from=181 to=203)
ACD3_54_2
ACD3, Gracilibacteria, Bacteria

Not on your lists

1051..1455
DNA (405bp) protein (135aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=20 to=38)
transmembrane_regions (db=TMHMM db_id=tmhmm from=45 to=67)
transmembrane_regions 20..38 Tax=ACD3
ACD3_54_3
unknown

Not on your lists

1486..2211
DNA (726bp) protein (242aa)
Putative uncharacterized protein n=1 Tax=candidate division TM7 genomosp. GTL1 RepID=A5KS15_9BACT (db=UNIREF evalue=9.0e-33 bit_score=143.0 identity=36.25 coverage=94.6280991735537)
hypothetical protein
Putative uncharacterized protein n=1 Tax=candidate division TM7 genomosp. GTL1 RepID=A5KS15_9BACT Tax=ACD3
ACD3_54_4
ACD3, Gracilibacteria, Bacteria

Not on your lists

2211..2573
DNA (363bp) protein (121aa)
hypothetical protein
Restriction endonuclease-like (db=superfamily db_id=SSF52980 from=10 to=111 evalue=6.3e-17 interpro_id=IPR011335 interpro_description=Restriction endonuclease, type II-like GO=Molecular Function: DNA binding (GO:0003677))
UPF0102 (db=HMMPfam db_id=PF02021 from=12 to=102 evalue=7.4e-17 interpro_id=IPR003509 interpro_description=Uncharacterised protein family UPF0102)
UPF0102 (db=HAMAP db_id=MF_00048 from=5 to=115 evalue=15.706 interpro_id=IPR003509 interpro_description=Uncharacterised protein family UPF0102)
ACD3_54_5
ACD3, Gracilibacteria, Bacteria

Not on your lists

comp(2584..3087)
DNA (504bp) protein (168aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=23 to=45)
seg (db=Seg db_id=seg from=87 to=101)
transmembrane_regions 23..45 Tax=ACD3
ACD3_54_6

Not on your lists

comp(3133..4479)
DNA (1347bp) protein (449aa)
Phosphomannomutase n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C3H3_SPHTD (db=UNIREF evalue=2.0e-102 bit_score=376.0 identity=41.95 coverage=97.3273942093541)
glmM; phosphomannomutase
glmM; phosphomannomutase
PHOSPHOHEXOMUTASE FAMILY MEMBER (db=HMMPanther db_id=PTHR22573 from=69 to=448 evalue=1.1e-29)
ACD3_54_7
ACD3, Gracilibacteria, Bacteria

Not on your lists

comp(4488..7835)
DNA (3348bp) protein (1116aa)
seg (db=Seg db_id=seg from=775 to=792)
transmembrane_regions (db=TMHMM db_id=tmhmm from=519 to=539)
transmembrane_regions (db=TMHMM db_id=tmhmm from=634 to=668)
transmembrane_regions (db=TMHMM db_id=tmhmm from=688 to=710)
ACD3_54_8
ACD3, Gracilibacteria, Bacteria

Not on your lists

comp(7856..9391)
DNA (1536bp) protein (512aa)
polysaccharide biosynthesis protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=345 to=367)
transmembrane_regions (db=TMHMM db_id=tmhmm from=380 to=398)
transmembrane_regions (db=TMHMM db_id=tmhmm from=408 to=430)
ACD3_54_9
ACD3, Gracilibacteria, Bacteria

Not on your lists

comp(9480..12794)
DNA (3315bp) protein (1105aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=900 to=919)
transmembrane_regions (db=TMHMM db_id=tmhmm from=876 to=895)
transmembrane_regions (db=TMHMM db_id=tmhmm from=846 to=863)
transmembrane_regions (db=TMHMM db_id=tmhmm from=814 to=836)
ACD3_54_10
ACD3, Gracilibacteria, Bacteria

Not on your lists

comp(12848..14674)
DNA (1827bp) protein (609aa)
hypothetical protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=581 to=603)
seg (db=Seg db_id=seg from=399 to=413)
THROMBOSPONDIN (db=HMMPanther db_id=PTHR10199:SF11 from=350 to=570 evalue=2.3e-36)
ACD3_54_11
ACD3, Gracilibacteria, Bacteria

Not on your lists

comp(14700..15509)
DNA (810bp) protein (270aa)
hypothetical protein; K07001 (db=KEGG evalue=6.0e-24 bit_score=114.0 identity=32.26 coverage=67.037037037037)
seg (db=Seg db_id=seg from=12 to=24)
FabD/lysophospholipase-like (db=superfamily db_id=SSF52151 from=7 to=260 evalue=2.7e-28 interpro_id=IPR016035 interpro_description=Acyl transferase/acyl hydrolase/lysophospholipase GO=Biological Process: metabolic process (GO:0008152))
Patatin (db=HMMPfam db_id=PF01734 from=21 to=169 evalue=7.6e-06 interpro_id=IPR002641 interpro_description=Patatin GO=Biological Process: lipid metabolic process (GO:0006629))
ACD3_54_12
ACD3, Gracilibacteria, Bacteria

Not on your lists

comp(15509..16261)
DNA (753bp) protein (251aa)
HD-domain/PDEase-like (db=superfamily db_id=SSF109604 from=33 to=86 evalue=3.9e-10)
CYCLIC NUCLEOTIDE PHOSPHODIESTERASE (db=HMMPanther db_id=PTHR11347 from=30 to=85 evalue=0.00063)
HIGH-AFFINITY CGMP-SPECIFIC 3,5-CYCLIC PHOSPHODIESTERASE 9 (db=HMMPanther db_id=PTHR11347:SF31 from=30 to=85 evalue=0.00063)
HD-domain/PDEase-like Tax=ACD3
ACD3_54_13
ACD3, Gracilibacteria, Bacteria

Not on your lists

comp(16385..16774)
DNA (390bp) protein (130aa)
seg (db=Seg db_id=seg from=101 to=118)
coiled-coil (db=Coil db_id=coil from=98 to=123 evalue=NA)
cAMP-binding domain-like (db=superfamily db_id=SSF51206 from=12 to=107 evalue=3.0e-09 interpro_id=IPR018490 interpro_description=Cyclic nucleotide-binding-like)
cNMP_binding (db=HMMPfam db_id=PF00027 from=27 to=103 evalue=3.4e-08 interpro_id=IPR000595 interpro_description=Cyclic nucleotide-binding)
ACD3_54_14
unknown

Not on your lists

comp(16802..17479)
DNA (678bp) protein (226aa)
Cell division ATP-binding protein FtsE n=4 Tax=Ruminococcus RepID=D4LRW2_9FIRM (db=UNIREF evalue=2.0e-49 bit_score=199.0 identity=47.74 coverage=87.1681415929203)
cell division ATP-binding protein FtsE
seg (db=Seg db_id=seg from=12 to=21)
FILAMENTATION TEMPERATURE SENSITIVE CELL DIVISION PROTEIN FTSE (db=HMMPanther db_id=PTHR19222:SF36 from=1 to=222 evalue=5.8e-79)
ACD3_54_15
ACD3, Gracilibacteria, Bacteria

Not on your lists

comp(17558..19795)
DNA (2238bp) protein (746aa)
large adhesin (db=KEGG evalue=1.0e-11 bit_score=75.5 identity=26.33 coverage=40.3485254691689)
seg (db=Seg db_id=seg from=13 to=51)
transmembrane_regions (db=TMHMM db_id=tmhmm from=12 to=34)
Pili subunits (db=superfamily db_id=SSF54523 from=13 to=136 evalue=7.1e-19)
ACD3_54_16

Not on your lists

19942..20343
DNA (402bp) protein (134aa)
Sensor protein n=1 Tax=Candidatus Cloacamonas acidaminovorans RepID=B0VEU8_CLOAI (db=UNIREF evalue=6.0e-09 bit_score=63.2 identity=32.59 coverage=94.0298507462687)
cAMP-binding domain-like (db=superfamily db_id=SSF51206 from=5 to=127 evalue=3.0e-19 interpro_id=IPR018490 interpro_description=Cyclic nucleotide-binding-like)
no description (db=Gene3D db_id=G3DSA:2.60.120.10 from=5 to=124 evalue=1.2e-14 interpro_id=IPR014710 interpro_description=RmlC-like jelly roll fold)
cNMP_binding (db=HMMPfam db_id=PF00027 from=27 to=110 evalue=4.5e-10 interpro_id=IPR000595 interpro_description=Cyclic nucleotide-binding)
ACD3_54_17
ACD3, Gracilibacteria, Bacteria

Not on your lists


20438..20701
DNA (264bp) protein (88aa)
30S ribosomal protein S15
seg (db=Seg db_id=seg from=60 to=71)
coiled-coil (db=Coil db_id=coil from=27 to=48 evalue=NA)
30S RIBOSOMAL PROTEIN S15 (db=HMMPanther db_id=PTHR23321:SF10 from=2 to=86 evalue=2.7e-38 interpro_id=IPR005290 interpro_description=Ribosomal protein S15, bacterial-type GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
ACD3_54_18
ACD3, Gracilibacteria, Bacteria

Not on your lists

20808..21683
DNA (876bp) protein (292aa)
murein transglycosylase
transmembrane_regions (db=TMHMM db_id=tmhmm from=5 to=22)
Lysozyme-like (db=superfamily db_id=SSF53955 from=84 to=227 evalue=7.1e-26)
no description (db=Gene3D db_id=G3DSA:1.10.530.10 from=86 to=241 evalue=7.4e-24)
ACD3_54_19

Not on your lists

21788..22510
DNA (723bp) protein (241aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=31 to=53)
transmembrane_regions (db=TMHMM db_id=tmhmm from=63 to=85)
seg (db=Seg db_id=seg from=172 to=179)
Uncharacterized protein {ECO:0000313|EMBL:EKE27342.1}; TaxID=1234023 species="Bacteria; environmental samples.;" source="uncultured bacterium (gcode 4).;"
ACD3_54_20
ACD3, Gracilibacteria, Bacteria

Not on your lists

22510..23343
DNA (834bp) protein (278aa)
5,10-methylene-tetrahydrofolate cyclohydrolase (EC:1.5.1.5 3.5.4.9)
seg (db=Seg db_id=seg from=61 to=85)
METHYLENETETRAHYDROFOLATE DEHYDROGENASE FAMILY MEMBER (db=HMMPanther db_id=PTHR10025 from=12 to=270 evalue=1.9e-103)
THFDHDRGNASE (db=FPrintScan db_id=PR00085 from=68 to=95 evalue=1.5e-59 interpro_id=IPR000672 interpro_description=Tetrahydrofolate dehydrogenase/cyclohydrolase GO=Molecular Function: catalytic activity (GO:0003824), Biological Process: folic acid and derivative biosynthetic process (GO:0009396))
ACD3_54_21
ACD3, Gracilibacteria, Bacteria

Not on your lists

23336..23578
DNA (243bp) protein (81aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=5 to=24)
transmembrane_regions 5..24 Tax=ACD3
ACD3_54_22
ACD3, Gracilibacteria, Bacteria

Not on your lists

comp(23579..24994)
DNA (1416bp) protein (472aa)
seg (db=Seg db_id=seg from=46 to=57)
seg (db=Seg db_id=seg from=228 to=248)
seg (db=Seg db_id=seg from=24 to=45)
transmembrane_regions (db=TMHMM db_id=tmhmm from=23 to=45)
ACD3_54_23
ACD3, Gracilibacteria, Bacteria

Not on your lists

comp(25021..26451)
DNA (1431bp) protein (477aa)
hypothetical protein (db=KEGG evalue=3.0e-13 bit_score=80.1 identity=27.64 coverage=48.8469601677149)
seg (db=Seg db_id=seg from=10 to=43)
transmembrane_regions (db=TMHMM db_id=tmhmm from=9 to=31)
Pili subunits (db=superfamily db_id=SSF54523 from=10 to=142 evalue=1.1e-18)
ACD3_54_24
ACD3, Gracilibacteria, Bacteria

Not on your lists

comp(26474..27748)
DNA (1275bp) protein (425aa)
seg (db=Seg db_id=seg from=10 to=43)
transmembrane_regions (db=TMHMM db_id=tmhmm from=9 to=31)
Pili subunits (db=superfamily db_id=SSF54523 from=10 to=131 evalue=3.5e-19)
IV_pilin_GFxxxE: prepilin-type N-term (db=HMMTigr db_id=TIGR02532 from=7 to=30 evalue=2.2e-07 interpro_id=IPR012902 interpro_description=Prepilin-type cleavage/methylation, N-terminal)
ACD3_54_25
ACD3, Gracilibacteria, Bacteria

Not on your lists

comp(27862..29172)
DNA (1311bp) protein (437aa)
type IV pilus assembly protein
P-loop containing nucleoside triphosphate hydrolases (db=superfamily db_id=SSF52540 from=22 to=435 evalue=3.9e-75)
no description (db=Gene3D db_id=G3DSA:3.40.50.300 from=154 to=434 evalue=1.7e-71)
GSPII_E (db=HMMPfam db_id=PF00437 from=61 to=317 evalue=1.7e-53 interpro_id=IPR001482 interpro_description=Type II secretion system protein E GO=Molecular Function: ATP binding (GO:0005524), Cellular Component: intracellular (GO:0005622), Biological Process: transport (GO:0006810))
ACD3_54_26
ACD3, Gracilibacteria, Bacteria

Not on your lists

29263..29493
DNA (231bp) protein (77aa)
seg (db=Seg db_id=seg from=46 to=58)
seg (db=Seg db_id=seg from=2 to=29)
transmembrane_regions (db=TMHMM db_id=tmhmm from=55 to=74)
transmembrane_regions (db=TMHMM db_id=tmhmm from=5 to=22)
ACD3_54_27
ACD3, Gracilibacteria, Bacteria

Not on your lists

29496..30023
DNA (528bp) protein (176aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=17 to=39)
transmembrane_regions (db=TMHMM db_id=tmhmm from=54 to=76)
transmembrane_regions 17..39 Tax=ACD3
ACD3_54_28

Not on your lists

30159..30476
DNA (318bp) protein (106aa)
hypothetical protein
hypothetical protein alias=ACD3_9.31982.74_28,ACD3_9.31982.74G0028,ACD3_C00054G00028 id=50712 tax=ACD3 species=Salinispora arenicola genus=Salinispora taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria organism_group=BD1-5 organism_desc=BD1-5
Uncharacterized protein {ECO:0000313|EMBL:EKE27351.1}; TaxID=1234023 species="Bacteria; environmental samples.;" source="uncultured bacterium (gcode 4).;"
ACD3_54_29
ACD3, Gracilibacteria, Bacteria

Not on your lists

30487..30720
DNA (234bp) protein (78aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=5 to=27)
transmembrane_regions (db=TMHMM db_id=tmhmm from=54 to=76)
transmembrane_regions 5..27 Tax=ACD3
ACD3_54_30
ACD3, Gracilibacteria, Bacteria

Not on your lists

30722..31285
DNA (564bp) protein (188aa)
seg (db=Seg db_id=seg from=50 to=77)
transmembrane_regions (db=TMHMM db_id=tmhmm from=57 to=79)
transmembrane_regions (db=TMHMM db_id=tmhmm from=20 to=42)
transmembrane_regions 20..42 Tax=ACD3
Displaying items 1-30 of 31 in total

View Taxonomy