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ACD80_2

Alias: ACD80_29990.14932.21

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Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD80_2_1
unknown

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1..1218
DNA (1218bp) protein (406aa)
Outer membrane protein, putative n=1 Tax=Flavobacteriales bacterium ALC-1 RepID=A8UGF0_9FLAO (db=UNIREF evalue=1.0e-07 bit_score=61.6 identity=32.53 coverage=33.743842364532)
seg (db=Seg db_id=seg from=353 to=364)
seg (db=Seg db_id=seg from=22 to=32)
Adhesin YadA, collagen-binding domain (db=superfamily db_id=SSF101967 from=133 to=234 evalue=2.0e-11)
ACD80_2_2
ACD80, SR1, Bacteria

Not on your lists

comp(1327..2373)
DNA (1047bp) protein (349aa)
hypothetical protein
POLYPRENYL_SYNTHASE_2 (db=PatternScan db_id=PS00444 from=229 to=241 evalue=0.0 interpro_id=IPR000092 interpro_description=Polyprenyl synthetase GO=Biological Process: isoprenoid biosynthetic process (GO:0008299))
Terpenoid synthases (db=superfamily db_id=SSF48576 from=7 to=348 evalue=5.3e-57 interpro_id=IPR008949 interpro_description=Terpenoid synthase)
no description (db=Gene3D db_id=G3DSA:1.10.600.10 from=5 to=348 evalue=2.1e-54 interpro_id=IPR008949 interpro_description=Terpenoid synthase)
ACD80_2_3
ACD80, SR1, Bacteria

Not on your lists

2716..3900
DNA (1185bp) protein (395aa)
seg (db=Seg db_id=seg from=294 to=318)
seg (db=Seg db_id=seg from=203 to=256)
seg (db=Seg db_id=seg from=168 to=201)
coiled-coil (db=Coil db_id=coil from=167 to=195 evalue=NA)
ACD80_2_4
ACD80, SR1, Bacteria

Not on your lists

4735..5094
DNA (360bp) protein (120aa)
4735..5094 + (rbs_motif=TACTT rbs_spacer=14bp)
hypothetical protein Tax=ACD80
ACD80_2_5
ACD80, SR1, Bacteria

Not on your lists

5123..5938
DNA (816bp) protein (272aa)
seg (db=Seg db_id=seg from=242 to=263)
seg (db=Seg db_id=seg from=49 to=107)
coiled-coil (db=Coil db_id=coil from=237 to=268 evalue=NA)
coiled-coil 237..268 Tax=ACD80
ACD80_2_6
ACD80, SR1, Bacteria

Not on your lists

comp(6058..6981)
DNA (924bp) protein (308aa)
hypothetical protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=279 to=301)
transmembrane_regions (db=TMHMM db_id=tmhmm from=247 to=269)
seg (db=Seg db_id=seg from=31 to=43)
ACD80_2_7
unknown

Not on your lists

comp(7007..7492)
DNA (486bp) protein (162aa)
Adenylate cyclase n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JDU1_9BACT (db=UNIREF evalue=7.0e-21 bit_score=102.0 identity=42.38 coverage=90.7407407407407)
adenylate cyclase (db=KEGG evalue=4.0e-19 bit_score=97.1 identity=36.77 coverage=92.5925925925926)
CYTH-like phosphatases (db=superfamily db_id=SSF55154 from=1 to=153 evalue=4.8e-25 interpro_id=IPR004206 interpro_description=mRNA capping enzyme, beta subunit GO=Molecular Function: polynucleotide 5'-phosphatase activity (GO:0004651), Molecular Function: protein binding (GO:0005515), Biological Process: mRNA capping (GO:0006370), Cellular Component: mRNA cap methyltransferase complex (GO:0031533))
Uncharacterised stand-alone CYTH domain protein, short type (db=HMMPIR db_id=PIRSF016487 from=1 to=155 evalue=9.5e-12 interpro_id=IPR012042 interpro_description=Uncharacterised conserved protein UCP016487, CYTH domain-containing)
ACD80_2_8
ACD80, SR1, Bacteria

Not on your lists

comp(7570..8763)
DNA (1194bp) protein (398aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=358 to=380)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=24)
transmembrane_regions 7..24 Tax=ACD80
hypothetical protein
ACD80_2_9
ACD80, SR1, Bacteria

Not on your lists

8912..9859
DNA (948bp) protein (316aa)
seg (db=Seg db_id=seg from=110 to=125)
HD-domain/PDEase-like (db=superfamily db_id=SSF109604 from=53 to=196 evalue=4.2e-07)
HD (db=HMMPfam db_id=PF01966 from=58 to=195 evalue=5.8e-07 interpro_id=IPR006674 interpro_description=Metal-dependent phosphohydrolase, HD subdomain)
seg 110..125 Tax=ACD80
ACD80_2_10
unknown

Not on your lists

9878..10387
DNA (510bp) protein (170aa)
Hypothetical phage protein n=2 Tax=unclassified Myoviridae RepID=D5GV49_9CAUD (db=UNIREF evalue=2.0e-12 bit_score=75.1 identity=34.55 coverage=92.3529411764706)
seg (db=Seg db_id=seg from=14 to=21)
P-loop containing nucleoside triphosphate hydrolases (db=superfamily db_id=SSF52540 from=1 to=155 evalue=1.8e-08)
no description (db=Gene3D db_id=G3DSA:3.40.50.300 from=1 to=163 evalue=3.8e-07)
ACD80_2_11
ACD80, SR1, Bacteria

Not on your lists

10472..10690
DNA (219bp) protein (73aa)
coiled-coil (db=Coil db_id=coil from=50 to=71 evalue=NA)
coiled-coil 50..71 Tax=ACD80
ACD80_2_12
ACD80, SR1, Bacteria

Not on your lists

10711..11136
DNA (426bp) protein (142aa)
class I peptide chain release factor
RF-1 (db=HMMPfam db_id=PF00472 from=5 to=126 evalue=1.9e-18 interpro_id=IPR000352 interpro_description=Class I peptide chain release factor GO=Molecular Function: translation release factor activity (GO:0003747), Biological Process: translational termination (GO:0006415))
PEPTIDE CHAIN RELEASE FACTOR (db=HMMPanther db_id=PTHR11075 from=10 to=135 evalue=1.8e-16)
IMMATURE COLON CARCINOMA TRANSCRIPT 1 (DIGESTION SUBSTRACTION 1) (DS- 1) (db=HMMPanther db_id=PTHR11075:SF12 from=10 to=135 evalue=1.8e-16)
ACD80_2_13
ACD80, SR1, Bacteria

Not on your lists


11200..13095
DNA (1896bp) protein (632aa)
hypothetical protein
seg (db=Seg db_id=seg from=59 to=74)
ARGINYL-TRNA SYNTHETASE (db=HMMPanther db_id=PTHR11956 from=24 to=631 evalue=1.0e-68 interpro_id=IPR001278 interpro_description=Arginyl-tRNA synthetase, class Ic GO=Molecular Function: arginine-tRNA ligase activity (GO:0004814), Molecular Function: ATP binding (GO:0005524), Cellular Component: cytoplasm (GO:0005737), Biological Process: arginyl-tRNA aminoacylation (GO:0006420))
no description (db=Gene3D db_id=G3DSA:3.40.50.620 from=108 to=519 evalue=2.6e-63 interpro_id=IPR014729 interpro_description=Rossmann-like alpha/beta/alpha sandwich fold)
ACD80_2_14
ACD80, SR1, Bacteria

Not on your lists

13232..14521
DNA (1290bp) protein (430aa)
hypothetical protein
hypothetical protein
Tyrosyl-tRNA synthetase n=1 Tax=Algoriphagus sp. PR1 RepID=A3HSE6_9BACT (db=UNIREF evalue=6.0e-81 bit_score=305.0 identity=40.65 coverage=98.1395348837209)
TYROSYL-TRNA SYNTHETASE (db=HMMPanther db_id=PTHR11766 from=1 to=429 evalue=7.9e-109 interpro_id=IPR002307 interpro_description=Tyrosyl-tRNA synthetase, class Ib, bacterial/mitochondrial GO=Molecular Function: nucleotide binding (GO:0000166), Molecular Function: tyrosine-tRNA ligase activity (GO:0004831), Molecular Function: ATP binding (GO:0005524), Cellular Component: cytoplasm (GO:0005737), Biological Process: translation (GO:0006412), Biological Process: tyrosyl-tRNA aminoacylation (GO:0006437))
ACD80_2_15
ACD80, SR1, Bacteria

Not on your lists

comp(14673..14972)
DNA (300bp) protein (100aa)
14673..14972 - (rbs_motif=None rbs_spacer=None)
hypothetical protein Tax=ACD80
Displaying 15 items

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