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ACD80_20

Alias: ACD80_23430.13938.18

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Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD80_20_1
ACD80, SR1, Bacteria

Not on your lists

comp(58..771)
DNA (714bp) protein (238aa)
seg (db=Seg db_id=seg from=125 to=135)
seg 125..135 Tax=ACD80
ACD80_20_2
ACD80, SR1, Bacteria

Not on your lists


979..1635
DNA (657bp) protein (219aa)
50S ribosomal protein L9
seg (db=Seg db_id=seg from=164 to=176)
seg (db=Seg db_id=seg from=188 to=207)
coiled-coil (db=Coil db_id=coil from=186 to=216 evalue=NA)
ACD80_20_3
ACD80, SR1, Bacteria

Not on your lists

comp(1797..2066)
DNA (270bp) protein (90aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=4 to=26)
transmembrane_regions (db=TMHMM db_id=tmhmm from=33 to=52)
transmembrane_regions (db=TMHMM db_id=tmhmm from=62 to=84)
transmembrane_regions 4..26 Tax=ACD80
ACD80_20_4
ACD80, SR1, Bacteria

Not on your lists

comp(2173..3003)
DNA (831bp) protein (277aa)
2173..3003 - (rbs_motif=None rbs_spacer=None)
hypothetical protein Tax=ACD80
ACD80_20_5
ACD80, SR1, Bacteria

Not on your lists

comp(3617..4699)
DNA (1083bp) protein (361aa)
amidase (db=KEGG evalue=4.0e-19 bit_score=99.0 identity=33.33 coverage=46.2603878116344)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
SLH (db=HMMPfam db_id=PF00395 from=199 to=240 evalue=6.8e-13 interpro_id=IPR001119 interpro_description=S-layer homology domain)
SLH (db=HMMPfam db_id=PF00395 from=260 to=299 evalue=7.5e-06 interpro_id=IPR001119 interpro_description=S-layer homology domain)
ACD80_20_6
ACD80, SR1, Bacteria

Not on your lists

4859..6424
DNA (1566bp) protein (522aa)
hypothetical protein
hypothetical protein
Excinuclease ABC, subunit B n=3 Tax=Lactobacillus delbrueckii RepID=Q1GB38_LACDA (db=UNIREF evalue=1.0e-114 bit_score=417.0 identity=43.78 coverage=84.8659003831418)
P-loop containing nucleoside triphosphate hydrolases (db=superfamily db_id=SSF52540 from=3 to=382 evalue=7.4e-94)
ACD80_20_7
ACD80, SR1, Bacteria

Not on your lists

comp(6437..6724)
DNA (288bp) protein (96aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=21 to=54)
transmembrane_regions (db=TMHMM db_id=tmhmm from=69 to=91)
transmembrane_regions 21..54 Tax=ACD80
ACD80_20_8

Not on your lists

6778..8151
DNA (1374bp) protein (458aa)
hypothetical protein
seg (db=Seg db_id=seg from=229 to=243)
RADICAL SAM PROTEINS (db=HMMPanther db_id=PTHR11918 from=5 to=391 evalue=5.0e-47 interpro_id=IPR005839 interpro_description=Methylthiotransferase GO=Molecular Function: catalytic activity (GO:0003824), Biological Process: RNA modification (GO:0009451), Molecular Function: 4 iron, 4 sulfur cluster binding (GO:0051539))
Radical SAM enzymes (db=superfamily db_id=SSF102114 from=112 to=422 evalue=1.2e-45)
ACD80_20_9
ACD80, SR1, Bacteria

Not on your lists

8218..8397
DNA (180bp) protein (60aa)
8218..8397 + (rbs_motif=None rbs_spacer=None)
hypothetical protein Tax=ACD80
ACD80_20_10
ACD80, SR1, Bacteria

Not on your lists

8390..8665
DNA (276bp) protein (92aa)
Plasmid_stabil (db=HMMPfam db_id=PF05016 from=4 to=86 evalue=3.7e-13 interpro_id=IPR007712 interpro_description=Plasmid stabilisation system)
RelE-like (db=superfamily db_id=SSF143011 from=1 to=91 evalue=8.5e-06)
Plasmid_stabil Tax=ACD80
ACD80_20_11
ACD80, SR1, Bacteria

Not on your lists

8667..9539
DNA (873bp) protein (291aa)
NtrC family signal transduction histidine kinase
Fe-only hydrogenase (db=superfamily db_id=SSF53920 from=4 to=257 evalue=2.4e-38 interpro_id=IPR009016 interpro_description=Iron hydrogenase)
Fe_hyd_lg_C (db=HMMPfam db_id=PF02906 from=9 to=246 evalue=1.7e-29 interpro_id=IPR004108 interpro_description=Iron hydrogenase, large subunit, C-terminal)
no description (db=Gene3D db_id=G3DSA:3.40.50.1780 from=13 to=195 evalue=2.1e-09)
ACD80_20_12
ACD80, SR1, Bacteria

Not on your lists

9761..10855
DNA (1095bp) protein (365aa)
hemN; coproporphyrinogen III oxidase (EC:1.3.3.3 1.3.99.22)
Radical SAM enzymes (db=superfamily db_id=SSF102114 from=10 to=364 evalue=7.0e-42)
COPROPORPHYRINIGEN III OXIDASE (db=HMMPanther db_id=PTHR13932 from=6 to=361 evalue=1.8e-23)
HemN_C (db=HMMPfam db_id=PF06969 from=242 to=350 evalue=3.5e-10 interpro_id=IPR010723 interpro_description=HemN, C-terminal GO=Molecular Function: coproporphyrinogen oxidase activity (GO:0004109), Cellular Component: cytoplasm (GO:0005737), Biological Process: porphyrin biosynthetic process (GO:0006779), Biological Process: oxidation reduction (GO:0055114))
ACD80_20_13
ACD80, SR1, Bacteria

Not on your lists

10909..11331
DNA (423bp) protein (141aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=5 to=27)
coiled-coil (db=Coil db_id=coil from=35 to=56 evalue=NA)
coiled-coil 35..56 Tax=ACD80
ACD80_20_14
ACD80, SR1, Bacteria

Not on your lists

11591..12619
DNA (1029bp) protein (343aa)
hypothetical protein
NusA: transcription termination factor NusA (db=HMMTigr db_id=TIGR01953 from=7 to=342 evalue=1.2e-72 interpro_id=IPR010213 interpro_description=Transcription termination factor NusA GO=Molecular Function: RNA binding (GO:0003723), Molecular Function: transcription regulator activity (GO:0030528))
TRANSCRIPTION TERMINATION FACTOR NUSA (db=HMMPanther db_id=PTHR22648 from=1 to=342 evalue=2.3e-62)
no description (db=Gene3D db_id=G3DSA:3.30.300.20 from=219 to=297 evalue=3.6e-23 interpro_id=IPR015946 interpro_description=K homology-like, alpha/beta)
ACD80_20_15
ACD80, SR1, Bacteria

Not on your lists

12873..13976
DNA (1104bp) protein (368aa)
hypothetical protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=27 to=49)
L domain-like (db=superfamily db_id=SSF52058 from=65 to=237 evalue=1.1e-30)
no description (db=Gene3D db_id=G3DSA:3.80.10.10 from=77 to=241 evalue=6.7e-28)
Displaying 15 items

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