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ACD80_43

Alias: ACD80_3200.32411.19

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Displaying 30 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD80_43_1
ACD80, ACD80, ACD80, ACD80, SR1, Bacteria

Not on your lists

comp(2..100)
DNA (99bp) protein (33aa)
2..100 - (rbs_motif=TTAAT rbs_spacer=8bp)
ACD80_43_2
ACD80, SR1, Bacteria

Not on your lists

comp(110..6061)
DNA (5952bp) protein (1984aa)
seg (db=Seg db_id=seg from=1660 to=1673)
coiled-coil (db=Coil db_id=coil from=1078 to=1113 evalue=NA)
coiled-coil (db=Coil db_id=coil from=809 to=830 evalue=NA)
coiled-coil (db=Coil db_id=coil from=1886 to=1907 evalue=NA)
ACD80_43_3
ACD80, SR1, Bacteria

Not on your lists

comp(6068..6346)
DNA (279bp) protein (93aa)
coiled-coil (db=Coil db_id=coil from=55 to=76 evalue=NA)
seg (db=Seg db_id=seg from=4 to=16)
seg (db=Seg db_id=seg from=54 to=64)
seg (db=Seg db_id=seg from=70 to=90)
ACD80_43_4
ACD80, SR1, Bacteria

Not on your lists

6527..6865
DNA (339bp) protein (113aa)
6527..6865 + (rbs_motif=None rbs_spacer=None)
hypothetical protein Tax=ACD80
ACD80_43_5
ACD80, SR1, Bacteria

Not on your lists

comp(6939..7433)
DNA (495bp) protein (165aa)
6939..7433 - (rbs_motif=TACTT rbs_spacer=15bp)
hypothetical protein Tax=ACD80
ACD80_43_6
ACD80, SR1, Bacteria

Not on your lists

7521..7880
DNA (360bp) protein (120aa)
7521..7880 + (rbs_motif=TTA rbs_spacer=5bp)
hypothetical protein Tax=ACD80
ACD80_43_7
ACD80, SR1, Bacteria

Not on your lists

comp(7914..8024)
DNA (111bp) protein (37aa)
7914..8024 - (rbs_motif=TTTAT rbs_spacer=13bp)
hypothetical protein Tax=ACD80
ACD80_43_8
ACD80, SR1, Bacteria

Not on your lists

comp(8113..8499)
DNA (387bp) protein (129aa)
8113..8499 - (rbs_motif=TACTA rbs_spacer=6bp)
hypothetical protein Tax=ACD80
ACD80_43_9
ACD80, SR1, Bacteria

Not on your lists

8654..9031
DNA (378bp) protein (126aa)
8654..9031 + (rbs_motif=None rbs_spacer=None)
hypothetical protein Tax=ACD80
ACD80_43_10
ACD80, SR1, Bacteria

Not on your lists

comp(9124..9597)
DNA (474bp) protein (158aa)
seg (db=Seg db_id=seg from=2 to=14)
seg 2..14 Tax=ACD80
ACD80_43_11
ACD80, SR1, Bacteria

Not on your lists

9765..10670
DNA (906bp) protein (302aa)
PpGpp synthetase
seg (db=Seg db_id=seg from=216 to=231)
HD-domain/PDEase-like (db=superfamily db_id=SSF109604 from=25 to=198 evalue=6.8e-37)
GUANOSINE-3',5'-BIS(DIPHOSPHATE) 3'-PYROPHOSPHOHYDROLASE (db=HMMPanther db_id=PTHR21262 from=124 to=217 evalue=0.00016)
ACD80_43_12
ACD80, SR1, Bacteria

Not on your lists

10740..11699
DNA (960bp) protein (320aa)
10740..11699 + (rbs_motif=TTTAT rbs_spacer=9bp)
hypothetical protein Tax=ACD80
ACD80_43_13
ACD80, SR1, Bacteria

Not on your lists

comp(11764..12921)
DNA (1158bp) protein (386aa)
seg (db=Seg db_id=seg from=6 to=15)
transmembrane_regions (db=TMHMM db_id=tmhmm from=5 to=24)
PGBD-like (db=superfamily db_id=SSF47090 from=301 to=357 evalue=2.8e-06 interpro_id=IPR002477 interpro_description=Peptidoglycan binding-like GO=Biological Process: metabolic process (GO:0008152))
PG_binding_1 (db=HMMPfam db_id=PF01471 from=316 to=357 evalue=1.8e-05 interpro_id=IPR002477 interpro_description=Peptidoglycan binding-like GO=Biological Process: metabolic process (GO:0008152))
ACD80_43_14
ACD80, SR1, Bacteria

Not on your lists

comp(13485..14474)
DNA (990bp) protein (330aa)
Pyruvate kinase
seg (db=Seg db_id=seg from=218 to=230)
PYRUVATE_KINASE (db=PatternScan db_id=PS00110 from=205 to=217 evalue=0.0 interpro_id=IPR018209 interpro_description=Pyruvate kinase, active site)
PYRUVATE KINASE (db=HMMPanther db_id=PTHR11817 from=4 to=328 evalue=2.2e-124 interpro_id=IPR001697 interpro_description=Pyruvate kinase GO=Molecular Function: magnesium ion binding (GO:0000287), Molecular Function: pyruvate kinase activity (GO:0004743), Biological Process: glycolysis (GO:0006096), Molecular Function: potassium ion binding (GO:0030955))
ACD80_43_15

Not on your lists

comp(14714..16237)
DNA (1524bp) protein (508aa)
hypothetical protein
seg (db=Seg db_id=seg from=344 to=356)
no description (db=Gene3D db_id=G3DSA:3.40.1030.10 from=162 to=446 evalue=1.9e-55 interpro_id=IPR000312 interpro_description=Glycosyl transferase, family 3 GO=Biological Process: metabolic process (GO:0008152), Molecular Function: transferase activity, transferring glycosyl groups (GO:0016757))
THYMIDINE/PYRIMIDINE-NUCLEOSIDE PHOSPHORYLASE (db=HMMPanther db_id=PTHR10515 from=91 to=500 evalue=1.2e-45 interpro_id=IPR000053 interpro_description=Pyrimidine-nucleoside phosphorylase GO=Biological Process: pyrimidine base metabolic process (GO:0006206))
step 1 in archaeal rubisco pathway. takes AMP and converts it into ribose 1,5 biphosphate. Functions as an AMP phosphorylase kelly wrighton (11/16/12)
ACD80_43_16
ACD80, SR1, Bacteria

Not on your lists

comp(16263..16559)
DNA (297bp) protein (99aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=21 to=38)
transmembrane_regions (db=TMHMM db_id=tmhmm from=53 to=70)
seg (db=Seg db_id=seg from=82 to=97)
transmembrane_regions 21..38 Tax=ACD80
ACD80_43_17

Not on your lists

comp(16683..18143)
DNA (1461bp) protein (487aa)
hypothetical protein
hypothetical protein
Ribulose-bisphosphate carboxylase n=1 Tax=Methanohalophilus mahii DSM 5219 RepID=D5EB97_METMS (db=UNIREF evalue=0.0 bit_score=726.0 identity=75.37 coverage=95.6878850102669)
RUBISCO_LARGE (db=PatternScan db_id=PS00157 from=186 to=194 evalue=0.0 interpro_id=IPR020878 interpro_description=Ribulose bisphosphate carboxylase, large chain, active site GO=Molecular Function: magnesium ion binding (GO:0000287), Cellular Component: plastid (GO:0009536), Molecular Function: ribulose-bisphosphate carboxylase activity (GO:0016984))
Swiss-Model gives great match to 9RUBA, with active site and site for dimer formation confirmed Jill Banfield (11/16/12)
ACD80_43_18
ACD80, SR1, Bacteria

Not on your lists

comp(18384..20387)
DNA (2004bp) protein (668aa)
seg (db=Seg db_id=seg from=428 to=439)
seg 428..439 Tax=ACD80
ACD80_43_19
ACD80, SR1, Bacteria

Not on your lists

comp(20413..21372)
DNA (960bp) protein (320aa)
hypothetical protein
seg (db=Seg db_id=seg from=300 to=312)
NagB/RpiA/CoA transferase-like (db=superfamily db_id=SSF100950 from=3 to=315 evalue=3.2e-57)
ACD80_43_20
ACD80, SR1, Bacteria

Not on your lists

21403..21624
DNA (222bp) protein (74aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=15 to=37)
transmembrane_regions 15..37 Tax=ACD80
ACD80_43_21
ACD80, SR1, Bacteria

Not on your lists

comp(21545..21832)
DNA (288bp) protein (96aa)
seg (db=Seg db_id=seg from=79 to=91)
seg 79..91 Tax=ACD80
hypothetical protein
ACD80_43_22
ACD80, SR1, Bacteria

Not on your lists

comp(21864..22676)
DNA (813bp) protein (271aa)
seg (db=Seg db_id=seg from=109 to=115)
seg 109..115 Tax=ACD80
ACD80_43_23
unknown

Not on your lists

comp(22802..23362)
DNA (561bp) protein (187aa)
hypothetical protein Bfra3_04711 n=1 Tax=Bacteroides fragilis 3_1_12 RepID=UPI0001B49B05 (db=UNIREF evalue=3.0e-14 bit_score=81.3 identity=32.48 coverage=82.3529411764706)
hypothetical protein (db=KEGG evalue=2.0e-12 bit_score=75.1 identity=32.12 coverage=70.0534759358289)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
seg (db=Seg db_id=seg from=11 to=24)
ACD80_43_24
ACD80, SR1, Bacteria

Not on your lists

comp(23379..25511)
DNA (2133bp) protein (711aa)
hypothetical protein
hypothetical protein
Polyribonucleotide nucleotidyltransferase n=68 Tax=Staphylococcus RepID=PNP_STAEQ (db=UNIREF evalue=4.0e-142 bit_score=509.0 identity=43.04 coverage=97.1870604781997)
seg (db=Seg db_id=seg from=75 to=90)
ACD80_43_25
ACD80, SR1, Bacteria

Not on your lists

comp(26012..26803)
DNA (792bp) protein (264aa)
26012..26803 - (rbs_motif=None rbs_spacer=None)
hypothetical protein Tax=ACD80
ACD80_43_26
ACD80, SR1, Bacteria

Not on your lists

comp(26922..27740)
DNA (819bp) protein (273aa)
26922..27740 - (rbs_motif=TTTAT rbs_spacer=9bp)
hypothetical protein Tax=ACD80
ACD80_43_27
ACD80, SR1, Bacteria

Not on your lists

comp(27816..28049)
DNA (234bp) protein (78aa)
seg (db=Seg db_id=seg from=4 to=17)
transmembrane_regions (db=TMHMM db_id=tmhmm from=41 to=60)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=26)
transmembrane_regions 7..26 Tax=ACD80
ACD80_43_28
unknown

Not on your lists

comp(28118..28558)
DNA (441bp) protein (147aa)
Ribosomal RNA large subunit methyltransferase H
Ribosomal RNA large subunit methyltransferase H n=1 Tax=Granulicatella adiacens ATCC 49175 RepID=C8NHZ7_9LACT (db=UNIREF evalue=3.0e-16 bit_score=87.4 identity=38.61 coverage=96.5986394557823)
alpha/beta knot (db=superfamily db_id=SSF75217 from=1 to=145 evalue=5.7e-32)
Predicted methyltransferase, bacterial type (db=HMMPIR db_id=PIRSF004505 from=1 to=146 evalue=1.3e-28 interpro_id=IPR003742 interpro_description=SPOUT methyltransferase, predicted GO=Cellular Component: cytoplasm (GO:0005737), Biological Process: rRNA processing (GO:0006364), Molecular Function: methyltransferase activity (GO:0008168))
ACD80_43_29
ACD80, SR1, Bacteria

Not on your lists

comp(28666..30153)
DNA (1488bp) protein (496aa)
cgtA; obg family GTPase CgtA
seg (db=Seg db_id=seg from=337 to=348)
seg (db=Seg db_id=seg from=369 to=381)
seg (db=Seg db_id=seg from=173 to=181)
ACD80_43_30
ACD80, SR1, Bacteria

Not on your lists

30535..32349
DNA (1815bp) protein (605aa)
poly a polymerase family protein
seg (db=Seg db_id=seg from=526 to=539)
Poly A polymerase C-terminal region-like (db=superfamily db_id=SSF81891 from=305 to=589 evalue=6.3e-23)
PolyA_pol (db=HMMPfam db_id=PF01743 from=27 to=141 evalue=1.1e-20 interpro_id=IPR002646 interpro_description=Poly A polymerase, head domain GO=Molecular Function: RNA binding (GO:0003723), Biological Process: RNA processing (GO:0006396), Molecular Function: nucleotidyltransferase activity (GO:0016779))
Displaying 30 items

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