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ACD80_56

Alias: ACD80_23853.20118.20

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Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD80_56_1
ACD80, SR1, Bacteria

Not on your lists

comp(159..524)
DNA (366bp) protein (122aa)
159..524 - (rbs_motif=None rbs_spacer=None)
hypothetical protein Tax=ACD80
ACD80_56_2
unknown

Not on your lists

673..1503
DNA (831bp) protein (277aa)
sortase family protein n=1 Tax=candidate division TM7 single-cell isolate TM7c RepID=UPI00016B20CB (db=UNIREF evalue=5.0e-10 bit_score=68.6 identity=31.37 coverage=52.3465703971119)
seg (db=Seg db_id=seg from=24 to=38)
transmembrane_regions (db=TMHMM db_id=tmhmm from=24 to=46)
Sortase (db=superfamily db_id=SSF63817 from=114 to=275 evalue=2.5e-18)
ACD80_56_3
ACD80, SR1, Bacteria

Not on your lists

comp(1559..1906)
DNA (348bp) protein (116aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=45 to=67)
transmembrane_regions (db=TMHMM db_id=tmhmm from=9 to=30)
transmembrane_regions 9..30 Tax=ACD80
ACD80_56_4
ACD80, SR1, Bacteria

Not on your lists

2087..3898
DNA (1812bp) protein (604aa)
hypothetical protein
hypothetical protein
GTP-binding protein lepA n=1 Tax=Clostridium tetani RepID=Q896E7_CLOTE (db=UNIREF evalue=3.0e-178 bit_score=629.0 identity=51.91 coverage=98.841059602649)
TypA_BipA: GTP-binding protein TypA/BipA (db=HMMTigr db_id=TIGR01394 from=3 to=598 evalue=0.0 interpro_id=IPR006298 interpro_description=GTP-binding protein TypA GO=Molecular Function: GTP binding (GO:0005525), Cellular Component: intracellular (GO:0005622))
ACD80_56_5
ACD80, SR1, Bacteria

Not on your lists

comp(4251..4655)
DNA (405bp) protein (135aa)
seg (db=Seg db_id=seg from=21 to=32)
seg (db=Seg db_id=seg from=105 to=118)
seg 21..32 Tax=ACD80
ACD80_56_6

Not on your lists

comp(4685..6226)
DNA (1542bp) protein (514aa)
hypothetical protein
hypothetical protein
Prolyl-tRNA synthetase n=1 Tax=Porphyromonas endodontalis ATCC 35406 RepID=C3JC35_9PORP (db=UNIREF evalue=6.0e-151 bit_score=538.0 identity=58.71 coverage=94.9416342412451)
seg (db=Seg db_id=seg from=458 to=472)
ACD80_56_7
ACD80, SR1, Bacteria

Not on your lists

comp(6392..6712)
DNA (321bp) protein (107aa)
seg (db=Seg db_id=seg from=2 to=19)
seg (db=Seg db_id=seg from=67 to=77)
seg (db=Seg db_id=seg from=84 to=95)
transmembrane_regions (db=TMHMM db_id=tmhmm from=64 to=79)
ACD80_56_8
ACD80, SR1, Bacteria

Not on your lists

comp(6792..10913)
DNA (4122bp) protein (1374aa)
Isoleucine-tRNA ligase
seg (db=Seg db_id=seg from=833 to=849)
seg (db=Seg db_id=seg from=1255 to=1265)
seg (db=Seg db_id=seg from=1135 to=1151)
ACD80_56_9

Not on your lists

11236..12147
DNA (912bp) protein (304aa)
thyA; thymidylate synthase
seg (db=Seg db_id=seg from=223 to=228)
THYMIDYLATE_SYNTHASE (db=PatternScan db_id=PS00091 from=161 to=189 evalue=0.0 interpro_id=IPR020940 interpro_description=Thymidylate synthase, active site GO=Molecular Function: thymidylate synthase activity (GO:0004799), Biological Process: dTMP biosynthetic process (GO:0006231))
Thymidylate synthase/dCMP hydroxymethylase (db=superfamily db_id=SSF55831 from=5 to=303 evalue=4.9e-84 interpro_id=IPR000398 interpro_description=Thymidylate synthase GO=Molecular Function: thymidylate synthase activity (GO:0004799), Biological Process: dTMP biosynthetic process (GO:0006231))
ACD80_56_10
ACD80, SR1, Bacteria

Not on your lists

comp(12129..12236)
DNA (108bp) protein (36aa)
12129..12236 - (rbs_motif=TTA rbs_spacer=13bp)
hypothetical protein Tax=ACD80
ACD80_56_11
ACD80, SR1, Bacteria

Not on your lists

12288..12905
DNA (618bp) protein (206aa)
seg (db=Seg db_id=seg from=2 to=17)
seg (db=Seg db_id=seg from=184 to=197)
transmembrane_regions (db=TMHMM db_id=tmhmm from=76 to=98)
transmembrane_regions (db=TMHMM db_id=tmhmm from=118 to=140)
ACD80_56_12
ACD80, SR1, Bacteria

Not on your lists

13007..13693
DNA (687bp) protein (229aa)
coiled-coil (db=Coil db_id=coil from=55 to=76 evalue=NA)
seg (db=Seg db_id=seg from=5 to=14)
coiled-coil 55..76 Tax=ACD80
ACD80_56_13

Not on your lists

13811..14911
DNA (1101bp) protein (367aa)
Cytochrome c biogenesis protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=346 to=365)
transmembrane_regions (db=TMHMM db_id=tmhmm from=304 to=326)
transmembrane_regions (db=TMHMM db_id=tmhmm from=267 to=289)
ACD80_56_14
unknown

Not on your lists

comp(15127..15642)
DNA (516bp) protein (172aa)
hypothetical protein
Nuclear protein SET n=1 Tax=bacterium Ellin514 RepID=B9XNM9_9BACT (db=UNIREF evalue=2.0e-21 bit_score=105.0 identity=35.71 coverage=95.3488372093023)
SET domain (db=superfamily db_id=SSF82199 from=7 to=139 evalue=6.1e-23)
SET DOMAIN PROTEINS (db=HMMPanther db_id=PTHR22884 from=82 to=143 evalue=1.4e-09)
ACD80_56_15
ACD80, SR1, Bacteria

Not on your lists

comp(15669..16139)
DNA (471bp) protein (157aa)
N-acetyltransferase GCN5
GCN5-related N-acetyltransferase n=1 Tax=Alkaliphilus metalliredigens QYMF RepID=A6TQ22_ALKMQ (db=UNIREF evalue=1.0e-24 bit_score=115.0 identity=39.07 coverage=94.2675159235669)
Acyl-CoA N-acyltransferases (Nat) (db=superfamily db_id=SSF55729 from=15 to=123 evalue=1.7e-14 interpro_id=IPR016181 interpro_description=Acyl-CoA N-acyltransferase)
Acetyltransf_1 (db=HMMPfam db_id=PF00583 from=61 to=125 evalue=1.6e-09 interpro_id=IPR022610 interpro_description=GCN5-related N-acetyltransferase, C-terminal)
ACD80_56_16
ACD80, SR1, Bacteria

Not on your lists

comp(16182..16589)
DNA (408bp) protein (136aa)
hypothetical protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=26 to=48)
hypothetical protein alias=ACD80_23853.20118.20G0016,ACD80_23853.20118.20_16,ACD80_C00056G00016 id=132711 tax=ACD80 species=Salinibacter ruber genus=Salinibacter taxon_order=Bacteroidetes Order II. Incertae sedis taxon_class=unknown phylum=Bacteroidetes organism_group=SR1
hypothetical protein Tax=ACD80
ACD80_56_17
ACD80, SR1, Bacteria

Not on your lists

comp(16674..17264)
DNA (591bp) protein (197aa)
ylfA; hypothetical protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=167 to=186)
transmembrane_regions (db=TMHMM db_id=tmhmm from=140 to=157)
transmembrane_regions (db=TMHMM db_id=tmhmm from=111 to=133)
ACD80_56_18
ACD80, SR1, Bacteria

Not on your lists

comp(17403..18365)
DNA (963bp) protein (321aa)
methyltransferase type 11 (db=KEGG evalue=1.0e-08 bit_score=63.9 identity=26.11 coverage=46.7289719626168)
S-adenosyl-L-methionine-dependent methyltransferases (db=superfamily db_id=SSF53335 from=126 to=302 evalue=3.7e-21)
no description (db=Gene3D db_id=G3DSA:3.40.50.150 from=112 to=300 evalue=2.0e-13)
METHYLTRANSFERASE (db=HMMPanther db_id=PTHR10108 from=122 to=310 evalue=1.8e-10)
ACD80_56_19
ACD80, SR1, Bacteria

Not on your lists

comp(18476..19948)
DNA (1473bp) protein (491aa)
hypothetical protein
hypothetical protein
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B n=1 Tax=Stigmatella aurantiaca DW4/3-1 RepID=Q09CR4_STIAU (db=UNIREF evalue=3.0e-93 bit_score=345.0 identity=38.99 coverage=95.9266802443992)
GATB (db=PatternScan db_id=PS01234 from=144 to=158 evalue=0.0 interpro_id=IPR017958 interpro_description=Glutamyl-tRNA(Gln) amidotransferase, subunit B, conserved site GO=Biological Process: translation (GO:0006412), Molecular Function: carbon-nitrogen ligase activity, with glutamine as amido-N-donor (GO:0016884))
Displaying 19 items

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