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gwf1_scaffold_934

Alias: WS6_GWF1_33_233_8

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Displaying items 1-30 of 33 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
gwf1_scaffold_934_1
WS6_GWF1_33_233, WS6, Bacteria

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2..3112
DNA (3111bp) protein (1037aa)
Putative uncharacterized protein n=1 Tax=Shewanella benthica KT99 RepID=A9EHR7_9GAMM
von Willebrand factor type A {ECO:0000313|EMBL:KKP45360.1}; Flags: Fragment;; TaxID=1619096 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWF1_33_233.;"
putative repeat protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=679 to=701)
gwf1_scaffold_934_2
WS6_GWF1_33_233, WS6, Bacteria

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3084..3758
DNA (675bp) protein (225aa)
sortase family protein n=2 Tax=Saccharobacteria RepID=UPI00016B20CB
Sortase {ECO:0000313|EMBL:KKP45361.1}; TaxID=1619096 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWF1_33_233.;"
sortase family protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=21 to=43)
gwf1_scaffold_934_3
WS6_GWF1_33_233, WS6, Bacteria

Not on your lists

3840..4694
DNA (855bp) protein (285aa)
5,10-methylenetetrahydrofolate dehydrogenase (NADP+) (EC:1.5.1.5 3.5.4.9)
Bifunctional protein FolD n=1 Tax=Campylobacter gracilis RM3268 RepID=C8PGI7_9PROT
Bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/5,10-methylene-tetrahydrofolate cyclohydrolase, methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase {EC
THF_DHG_CYH_2 (db=PatternScan db_id=PS00767 from=259 to=267 evalue=0.0 interpro_id=IPR020867 interpro_description=Tetrahydrofolate dehydrogenase/cyclohydrolase, conserved site GO=Molecular Function: catalytic activity (GO:0003824), Biological Process: folic acid-containing compound biosynthetic process (GO:0009396), Biological Process: oxidation-reduction process (GO:0055114))
gwf1_scaffold_934_4
GWD1_WS6_35_594, WS6, Bacteria

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4681..5913
DNA (1233bp) protein (411aa)
glyA; glycine hydroxymethyltransferase (EC:2.1.2.1)
Serine hydroxymethyltransferase n=1 Tax=Thermobispora bispora (strain ATCC 19993 / DSM 43833 / CBS 139.67 / JCM 10125 / NBRC 14880 / R51) RepID=D6Y377_THEBD rbh
Serine hydroxymethyltransferase {ECO:0000313|EMBL:KKP82065.1}; TaxID=1619092 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWD1_35_594.;"
coiled-coil (db=Coil db_id=coil from=382 to=403 evalue=NA)
gwf1_scaffold_934_5

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5942..7537
DNA (1596bp) protein (532aa)
Thymidylate synthase complementing protein n=1 Tax=Oscillatoriales cyanobacterium JSC-12 RepID=K8GNT5_9CYAN rbh
Thymidylate synthase complementing protein {ECO:0000313|EMBL:KKP55178.1}; TaxID=1619088 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWB1_33_6.;"
seg (db=Seg db_id=seg from=344 to=349)
coiled-coil (db=Coil db_id=coil from=413 to=434 evalue=NA)
gwf1_scaffold_934_6

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7555..8115
DNA (561bp) protein (187aa)
dcd; deoxycytidine triphosphate deaminase (EC:3.5.4.13)
Deoxycytidine triphosphate deaminase n=3 Tax=Corynebacterium RepID=DCD_CORJK
Deoxycytidine triphosphate deaminase {ECO:0000313|EMBL:KKP55177.1}; TaxID=1619088 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWB1_33_6.;"
dUTPase-like (db=superfamily db_id=SSF51283 from=1 to=185 evalue=2.6e-45)
gwf1_scaffold_934_7
WS6_GWF1_33_233, WS6, Bacteria

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8133..9422
DNA (1290bp) protein (430aa)
SufS subfamily cysteine desulfurase, cysteine desulfurase / selenocysteine lyase {ECO:0000313|EMBL:KKP45366.1}; EC=2.8.1.7 {ECO:0000313|EMBL:KKP45366.1};; TaxID=1619096 species="Bacteria; candidate di
Cysteine desulfurase n=2 Tax=uncultured candidate division OP1 bacterium RepID=H5SHY4_9BACT rbh
SufS subfamily cysteine desulfurase
seg (db=Seg db_id=seg from=158 to=176)
gwf1_scaffold_934_8
GWD1_WS6_35_594, WS6, Bacteria

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9479..10612
DNA (1134bp) protein (378aa)
Lon protease n=1 Tax=Thermobaculum terrenum (strain ATCC BAA-798 / YNP1) RepID=D1CBY4_THET1
Lon protease {ECO:0000313|EMBL:KKP82061.1}; TaxID=1619092 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWD1_35_594.;"
hypothetical protein
seg (db=Seg db_id=seg from=262 to=273)
gwf1_scaffold_934_9
WS6_GWF1_33_233, WS6, Bacteria

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comp(10609..10806)
DNA (198bp) protein (66aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP45368.1}; TaxID=1619096 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWF1_33_233.;"
gwf1_scaffold_934_10
WS6_GWF1_33_233, WS6, Bacteria

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comp(10775..13111)
DNA (2337bp) protein (779aa)
Type IV secretory pathway VirB4 components-like protein n=3 Tax=candidate division TM7 genomosp. GTL1 RepID=A5KS14_9BACT rbh
Type IV secretory pathway VirB4 protein-like protein {ECO:0000313|EMBL:KKP45369.1}; TaxID=1619096 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWF1_33_2
hypothetical protein
seg (db=Seg db_id=seg from=509 to=520)
gwf1_scaffold_934_11
WS6_GWF1_33_233, WS6, Bacteria

Not on your lists

comp(13128..13790)
DNA (663bp) protein (221aa)
Putative uncharacterized protein n=2 Tax=candidate division TM7 genomosp. GTL1 RepID=A5KS15_9BACT
Uncharacterized protein {ECO:0000313|EMBL:KKP45370.1}; TaxID=1619096 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWF1_33_233.;"
hypothetical protein
coiled-coil (db=Coil db_id=coil from=143 to=171 evalue=NA)
gwf1_scaffold_934_12

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comp(13790..14614)
DNA (825bp) protein (275aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP55171.1}; TaxID=1619088 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWB1_33_6.;"
transmembrane_regions (db=TMHMM db_id=tmhmm from=21 to=43)
seg (db=Seg db_id=seg from=14 to=26)
gwf1_scaffold_934_13
WS6_GWF1_33_233, WS6, Bacteria

Not on your lists

comp(14666..15739)
DNA (1074bp) protein (358aa)
DNA replication and repair protein RecF n=1 Tax=Halobacteroides halobius (strain ATCC 35273 / DSM 5150 / MD-1) RepID=L0K426_HALHC
Recombination protein F, DNA replication and repair protein RecF {ECO:0000313|EMBL:KKP45372.1}; TaxID=1619096 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW20
recF protein
P-loop containing nucleoside triphosphate hydrolases (db=superfamily db_id=SSF52540 from=1 to=322 evalue=2.3e-25)
gwf1_scaffold_934_14

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comp(15739..17562)
DNA (1824bp) protein (608aa)
Elongation factor 4 n=1 Tax=Thermosediminibacter oceani (strain ATCC BAA-1034 / DSM 16646 / JW/IW-1228P) RepID=D9S2N8_THEOJ rbh
Elongation factor 4 {ECO:0000313|EMBL:KKP55169.1}; TaxID=1619088 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWB1_33_6.;"
GTP-binding protein LepA
seg (db=Seg db_id=seg from=573 to=589)
gwf1_scaffold_934_15

Not on your lists

comp(17614..18168)
DNA (555bp) protein (185aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP55168.1}; TaxID=1619088 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWB1_33_6.;"
transmembrane_regions (db=TMHMM db_id=tmhmm from=12 to=34)
seg (db=Seg db_id=seg from=16 to=29)
gwf1_scaffold_934_16
GWD1_WS6_35_594, WS6, Bacteria

Not on your lists

comp(18170..18718)
DNA (549bp) protein (183aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP82053.1}; TaxID=1619092 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWD1_35_594.;"
transmembrane_regions (db=TMHMM db_id=tmhmm from=13 to=35)
gwf1_scaffold_934_17

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comp(18690..19037)
DNA (348bp) protein (116aa)
30S ribosomal protein S20 n=1 Tax=Halothermothrix orenii (strain H 168 / OCM 544 / DSM 9562) RepID=RS20_HALOH
30S ribosomal protein S20 {ECO:0000313|EMBL:KKP55166.1}; TaxID=1619088 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWB1_33_6.;"
30S ribosomal protein S20
Ribosomal protein S20 (db=superfamily db_id=SSF46992 from=20 to=103 evalue=1.0e-16 interpro_id=IPR002583 interpro_description=Ribosomal protein S20 GO=Molecular Function: RNA binding (GO:0003723), Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
gwf1_scaffold_934_18
WS6_GWF1_33_233, WS6, Bacteria

Not on your lists

19085..19414
DNA (330bp) protein (110aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP45377.1}; TaxID=1619096 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWF1_33_233.;"
transmembrane_regions (db=TMHMM db_id=tmhmm from=9 to=31)
seg (db=Seg db_id=seg from=4 to=27)
Cadherin-like (db=superfamily db_id=SSF49313 from=24 to=108 evalue=3.4e-08 interpro_id=IPR015919 interpro_description=Cadherin-like GO=Molecular Function: calcium ion binding (GO:0005509), Cellular Component: membrane (GO:0016020))
gwf1_scaffold_934_19
WS6_GWF1_33_233, WS6, Bacteria

Not on your lists

19398..19811
DNA (414bp) protein (138aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP45378.1}; TaxID=1619096 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWF1_33_233.;"
transmembrane_regions (db=TMHMM db_id=tmhmm from=13 to=30)
seg (db=Seg db_id=seg from=13 to=32)
Purple acid phosphatase, N-terminal domain (db=superfamily db_id=SSF49363 from=22 to=122 evalue=5.3e-07 interpro_id=IPR008963 interpro_description=Purple acid phosphatase-like, N-terminal GO=Molecular Function: acid phosphatase activity (GO:0003993), Molecular Function: metal ion binding (GO:0046872))
gwf1_scaffold_934_20
WS6_GWF1_33_233, WS6, Bacteria

Not on your lists

comp(19795..21546)
DNA (1752bp) protein (584aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP45379.1}; TaxID=1619096 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWF1_33_233.;"
transmembrane_regions (db=TMHMM db_id=tmhmm from=12 to=34)
seg (db=Seg db_id=seg from=14 to=31)
B_ant_repeat: conserved repeat domain (db=HMMTigr db_id=TIGR01451 from=363 to=415 evalue=0.0013 interpro_id=IPR001434 interpro_description=Domain of unknown function DUF11 GO=Cellular Component: extrachromosomal circular DNA (GO:0005727))
gwf1_scaffold_934_21
WS6_GWF1_33_233, WS6, Bacteria

Not on your lists

comp(21630..22556)
DNA (927bp) protein (309aa)
Polymerase III subunit delta, DNA polymerase III subunit delta protein {ECO:0000313|EMBL:KKP45380.1}; EC=2.7.7.7 {ECO:0000313|EMBL:KKP45380.1};; TaxID=1619096 species="Bacteria; candidate division WS6
YqeN n=14 Tax=Bacillus RepID=A7Z6X0_BACA2
holA; DNA polymerase III subunit delta
seg (db=Seg db_id=seg from=40 to=54)
gwf1_scaffold_934_22
WS6_GWF1_33_233, WS6, Bacteria

Not on your lists

comp(22561..23994)
DNA (1434bp) protein (478aa)
Transcriptional regulator LytR n=2 Tax=Brevibacillus laterosporus RepID=F7U2Q2_BRELA
Cell envelope-related transcriptional attenuator {ECO:0000313|EMBL:KKP45381.1}; TaxID=1619096 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWF1_33_233.;
cell envelope-related transcriptional attenuator
transmembrane_regions (db=TMHMM db_id=tmhmm from=32 to=54)
gwf1_scaffold_934_23
RIFOXYB1_FULL_WS6_33_15_curated, Dojkabacteria, Bacteria

Not on your lists

comp(24013..25011)
DNA (999bp) protein (333aa)
UPI000288FE55 related cluster n=1 Tax=unknown RepID=UPI000288FE55
hypothetical protein; K07082 UPF0755 protein Tax=RIFOXYB1_FULL_WS6_33_15_curated
YceG family protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=22)
gwf1_scaffold_934_24

Not on your lists

comp(24995..25447)
DNA (453bp) protein (151aa)
Putative Holliday junction resolvase n=1 Tax=Halanaerobium saccharolyticum subsp. saccharolyticum DSM 6643 RepID=M5E1G0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:KKP55159.1}; TaxID=1619088 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWB1_33_6.;"
Holliday junction resolvase-like protein
RNAse_H_YqgF: RNAse H-fold protein YqgF (db=HMMTigr db_id=TIGR00250 from=8 to=140 evalue=1.7e-16 interpro_id=IPR005227 interpro_description=Resolvase, holliday junction-type, YqgF-like GO=Cellular Component: cytoplasm (GO:0005737), Biological Process: DNA repair (GO:0006281), Biological Process: DNA recombination (GO:0006310), Biological Process: response to DNA damage stimulus (GO:0006974), Molecular Function: hydrolase activity, acting on ester bonds (GO:0016788))
gwf1_scaffold_934_25
WS6_GWF1_33_233, WS6, Bacteria

Not on your lists


comp(25449..27197)
DNA (1749bp) protein (583aa)
Alanine-tRNA ligase, alanyl-tRNA synthetase {ECO:0000313|EMBL:KKP45384.1}; EC=6.1.1.7 {ECO:0000313|EMBL:KKP45384.1};; TaxID=1619096 species="Bacteria; candidate division WS6.;" source="candidate divis
alaS2; alanine--tRNA ligase (EC:6.1.1.7)
Alanine--tRNA ligase n=1 Tax=Treponema phagedenis F0421 RepID=E7NSZ3_TREPH rbh
seg (db=Seg db_id=seg from=295 to=306)
gwf1_scaffold_934_26
WS6_GWF1_33_233, WS6, Bacteria

Not on your lists

comp(27234..29093)
DNA (1860bp) protein (620aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP45385.1}; TaxID=1619096 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWF1_33_233.;"
seg (db=Seg db_id=seg from=16 to=34)
transmembrane_regions (db=TMHMM db_id=tmhmm from=12 to=34)
(db=HMMPfam db_id=PF10342 from=273 to=354 evalue=1.4e-06 interpro_id=IPR018466 interpro_description=Cell wall beta-glucan synthesis)
gwf1_scaffold_934_27
GWD1_WS6_35_594, WS6, Bacteria

Not on your lists

comp(29112..30428)
DNA (1317bp) protein (439aa)
Putative sugar ABC transporter, periplasmic component n=1 Tax=Deinococcus deserti (strain VCD115 / DSM 17065 / LMG 22923) RepID=C1D230_DEIDV
Uncharacterized protein {ECO:0000313|EMBL:KKP81930.1}; TaxID=1619092 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWD1_35_594.;"
family 1 extracellular solute-binding protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=9 to=31)
gwf1_scaffold_934_28
GWD1_WS6_35_594, WS6, Bacteria

Not on your lists

comp(30447..31241)
DNA (795bp) protein (265aa)
SrtC n=2 Tax=Lactococcus garvieae RepID=A4GX15_9LACT
SrtC {ECO:0000313|EMBL:KKP81931.1}; TaxID=1619092 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWD1_35_594.;"
sortase family protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=21 to=43)
gwf1_scaffold_934_29
WS6_GWF1_33_233, WS6, Bacteria

Not on your lists

31317..31907
DNA (591bp) protein (197aa)
Chaperone protein DnaJ n=2 Tax=Staphylococcus massiliensis RepID=K9ARN4_9STAP
Chaperone protein DnaJ, molecular chaperone DnaJ {ECO:0000313|EMBL:KKP45388.1}; TaxID=1619096 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWF1_33_233.;
dnaJ; chaperone protein DnaJ
seg (db=Seg db_id=seg from=13 to=24)
gwf1_scaffold_934_30
WS6_GWF1_33_233, WS6, Bacteria

Not on your lists

31933..32310
DNA (378bp) protein (126aa)
Molecular chaperone DnaJ n=1 Tax=Pontibacter sp. BAB1700 RepID=J0V6X1_9BACT
Molecular chaperone DnaJ, molecular chaperone DnaJ {ECO:0000313|EMBL:KKP45389.1}; TaxID=1619096 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWF1_33_233
molecular chaperone DnaJ
seg (db=Seg db_id=seg from=8 to=19)
Displaying items 1-30 of 33 in total

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