ggKbase home page

ERMLT700_curated_scaffold_376

Search features with annotation key words

Displaying items 1-30 of 32 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ERMLT700_curated_scaffold_376_1
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

33..806
-----------------
DNA (774bp)
protein (258aa)
Putative uncharacterized protein (Fragment) id=3570836 bin=GWA2_OP3_53_43 species=uncultured bacterium BAC10-4 genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_OP3_53_43 organism_group=OP3 (Omnitrophica) organism_desc=Was designated as curated version. Not curated. rp block places as OP3
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
ERMLT700_curated_scaffold_376_2
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

826..2595
-----------------
DNA (1770bp)
protein (590aa)
Cytochrome-c oxidase id=2731962 bin=GWC2_Ignavibacteria_56_12 species=Pedosphaera parvula genus=Pedosphaera taxon_order=Verrucomicrobiales taxon_class=Verrucomicrobiae phylum=Verrucomicrobia tax=GWC2_Ignavibacteria_56_12 organism_group=Ignavibacteria organism_desc=Larger genome
cyoB; Heme/copper-type cytochrome oxidase, subunit 1
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
ERMLT700_curated_scaffold_376_3
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

2601..3191
-----------------
DNA (591bp)
protein (197aa)
Cytochrome c oxidase, subunit III id=3570646 bin=GWA2_OP3_53_43 species=Geobacter uraniireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_OP3_53_43 organism_group=OP3 (Omnitrophica) organism_desc=Was designated as curated version. Not curated. rp block places as OP3
cytochrome c oxidase subunit III
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
ERMLT700_curated_scaffold_376_4
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

3201..3509
-----------------
DNA (309bp)
protein (103aa)
hypothetical protein VspiD_10905 id=2731965 bin=GWC2_Ignavibacteria_56_12 species=Verrucomicrobium spinosum genus=Verrucomicrobium taxon_order=Verrucomicrobiales taxon_class=Verrucomicrobiae phylum=Verrucomicrobia tax=GWC2_Ignavibacteria_56_12 organism_group=Ignavibacteria organism_desc=Larger genome
Caa(3)-type oxidase, subunit IV
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
ERMLT700_curated_scaffold_376_5
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

3506..3706
-----------------
DNA (201bp)
protein (67aa)
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
ERMLT700_curated_scaffold_376_6
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

3703..4071
-----------------
DNA (369bp)
protein (123aa)
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
ERMLT700_curated_scaffold_376_7
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

4035..4871
-----------------
DNA (837bp)
protein (279aa)
hypothetical protein n=1 Tax=SAR406 cluster bacterium SCGC AB-629-J13 RepID=UPI00035C3883
cyoA; Heme/copper-type cytochrome oxidase, subunit 2
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
ERMLT700_curated_scaffold_376_8
unknown

Not on your lists

comp(5027..5236)
-----------------
DNA (210bp)
protein (70aa)

This feature has no annotations

ERMLT700_curated_scaffold_376_9
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

comp(5306..6673)
-----------------
DNA (1368bp)
protein (456aa)
hypothetical protein n=1 Tax=Candidatus Poribacteria sp. WGA-4E RepID=UPI0003825029
radical SAM protein
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
ERMLT700_curated_scaffold_376_10
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

comp(6704..7207)
-----------------
DNA (504bp)
protein (168aa)
Putative uncharacterized protein id=4863498 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
ERMLT700_curated_scaffold_376_11
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

comp(7204..8205)
-----------------
DNA (1002bp)
protein (334aa)
Putative ATPase, Mrp homolog id=4388291 bin=GWA2_Methylomirabilis_73_35 species=Nitrospina gracilis genus=Nitrospina taxon_order=Nitrospinales taxon_class=Nitrospinia phylum=Nitrospinae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
chromosome partitioning ATPase
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
ERMLT700_curated_scaffold_376_12
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

comp(8237..9127)
-----------------
DNA (891bp)
protein (297aa)
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
ERMLT700_curated_scaffold_376_13
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

comp(9162..11204)
-----------------
DNA (2043bp)
protein (681aa)
putative universal stress protein UspA id=14626558 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Poribacteria tax=bin7_NC10_sister organism_group=NC10
putative universal stress protein UspA
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
ERMLT700_curated_scaffold_376_14
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

comp(11284..13020)
-----------------
DNA (1737bp)
protein (579aa)
Hypothetical (Diheme) protein id=4083687 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Kuenenia stuttgartiensis genus=Candidatus Kuenenia taxon_order=Candidatus Brocadiales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
putative cytochrome c
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
ERMLT700_curated_scaffold_376_15
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

comp(13017..13829)
-----------------
DNA (813bp)
protein (271aa)
hypothetical protein n=1 Tax=Candidatus Poribacteria sp. WGA-4E RepID=UPI00037064CB
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
ERMLT700_curated_scaffold_376_16
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

comp(13826..14449)
-----------------
DNA (624bp)
protein (208aa)
Hypothetical (Diheme) protein id=4083692 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Kuenenia stuttgartiensis genus=Candidatus Kuenenia taxon_order=Candidatus Brocadiales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
ERMLT700_curated_scaffold_376_17
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

comp(14446..16389)
-----------------
DNA (1944bp)
protein (648aa)
hypothetical protein id=14627775 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Poribacteria tax=bin7_NC10_sister organism_group=NC10
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
ERMLT700_curated_scaffold_376_18
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

comp(16404..17021)
-----------------
DNA (618bp)
protein (206aa)
Quinol:cytochrome c oxidoreductase monoheme cytochrome subunit n=1 Tax=Caldithrix abyssi DSM 13497 RepID=H1XPN3_9BACT
quinol:cytochrome c oxidoreductase monoheme cytochrome subunit
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
ERMLT700_curated_scaffold_376_19
RBG_16_Zixibacteria_53_22_curated, Zixibacteria, Bacteria

Not on your lists

comp(17018..20104)
-----------------
DNA (3087bp)
protein (1029aa)
hmoA; molybdopterin oxidoreductase, iron-sulfur binding subunit (EC:1.2.7.-)
Fe-S-cluster-containing hydrogenase n=1 Tax=Caldithrix abyssi DSM 13497 RepID=H1XPN6_9BACT
Tax=RBG_16_Zixibacteria_53_22_curated
ERMLT700_curated_scaffold_376_20
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

comp(20101..20745)
-----------------
DNA (645bp)
protein (215aa)
Putative uncharacterized protein n=1 Tax=Caldithrix abyssi DSM 13497 RepID=H1XPN7_9BACT
cytochrome c family protein
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
ERMLT700_curated_scaffold_376_21
unknown

Not on your lists

comp(20736..20894)
-----------------
DNA (159bp)
protein (53aa)

This feature has no annotations

ERMLT700_curated_scaffold_376_22
R_Acidobacteria_67_21, Acidobacteria, Bacteria

Not on your lists

21451..21900
-----------------
DNA (450bp)
protein (150aa)
hypothetical protein id=12556624 bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_67_21_curated
ERMLT700_curated_scaffold_376_23
Caldithrix abyssi, Caldithrix, Bacteria

Not on your lists

21904..22593
-----------------
DNA (690bp)
protein (230aa)
Glutaredoxin-like domain protein n=1 Tax=Caldithrix abyssi DSM 13497 RepID=H1XXX9_9BACT
Glutaredoxin-like domain protein {ECO:0000313|EMBL:EHO40854.1}; TaxID=880073 species="Bacteria; Caldithrix.;" source="Caldithrix abyssi DSM 13497.;"
glutaredoxin-like domain-containing protein
ERMLT700_curated_scaffold_376_24
unknown

Not on your lists

22655..22852
-----------------
DNA (198bp)
protein (66aa)

This feature has no annotations

ERMLT700_curated_scaffold_376_25
R_Elusimicrobia_57_9, Elusimicrobia, Bacteria

Not on your lists

comp(22932..23483)
-----------------
DNA (552bp)
protein (184aa)
Response regulator n=1 Tax=Myxococcus xanthus (strain DK 1622) RepID=Q1DC19_MYXXD
response regulator
Tax=RIFCSPHIGHO2_02_FULL_Elusimicrobia_57_9_curated
ERMLT700_curated_scaffold_376_26
unknown

Not on your lists

comp(23880..24071)
-----------------
DNA (192bp)
protein (64aa)

This feature has no annotations

ERMLT700_curated_scaffold_376_27
CSP1_2_Dadabacteria, Dadabacteria, Bacteria

Not on your lists

24720..27833
-----------------
DNA (3114bp)
protein (1038aa)
GAF domain-containing protein id=14425389 bin=bin1_lowGC species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin1_lowGC organism_group=Unknown_CP
GAF domain-containing protein
Tax=CSP1_2_Dadabacteria
ERMLT700_curated_scaffold_376_28
Jannaschia aquimarina, Jannaschia, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27853..28836)
-----------------
DNA (984bp)
protein (328aa)
IspB_2 protein {ECO:0000313|EMBL:KIT15225.1}; EC=2.5.1.90 {ECO:0000313|EMBL:KIT15225.1};; TaxID=935700 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Jannaschia.;" source="Jannaschia aquimarina.;"
isopentenyl pyrophosphate isomerase n=1 Tax=Halomicrobium katesii RepID=UPI00037A5999
geranylgeranyl pyrophosphate synthase
ERMLT700_curated_scaffold_376_29
unknown

Not on your lists

comp(28833..29273)
-----------------
DNA (441bp)
protein (147aa)

This feature has no annotations

ERMLT700_curated_scaffold_376_30
Cyanothece sp. PCC 7424, Cyanothece, Chroococcales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

comp(29277..30881)
-----------------
DNA (1605bp)
protein (535aa)
choline dehydrogenase (EC:1.1.99.1)
Choline dehydrogenase {ECO:0000313|EMBL:ACK73068.1}; EC=1.1.99.1 {ECO:0000313|EMBL:ACK73068.1};; TaxID=65393 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Cyanothece.;" source="Cyanothece sp. (strain PCC 7424) (Synechococcus sp. (strain ATCC; 29155)).;"
hypothetical protein n=1 Tax=Leptolyngbya boryana RepID=UPI00037C6343
Displaying items 1-30 of 32 in total

View Taxonomy