ggKbase home page

04302015_12_scaffold_76

Search features with annotation key words

Displaying items 1-30 of 79 in total
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
04302015_12_scaffold_76_1
unknown

Not on your lists

comp(2..793)
DNA (792bp) protein (264aa)
hypothetical protein n=1 Tax=Verrucomicrobium spinosum RepID=UPI0001744C63
04302015_12_scaffold_76_2
unknown

Not on your lists

comp(898..1947)
DNA (1050bp) protein (350aa)

This feature has no annotations

04302015_12_scaffold_76_3
Nitrolancea hollandica, Nitrolancea, Sphaerobacterales, Sphaerobacteridae, Chloroflexi, Bacteria

Not on your lists

comp(2305..3213)
DNA (909bp) protein (303aa)
Putative ribonuclease BN n=1 Tax=Nitrolancetus hollandicus Lb RepID=I4EK31_9CHLR
Putative ribonuclease BN {ECO:0000313|EMBL:CCF85043.1}; TaxID=1129897 species="Bacteria; Chloroflexi; Sphaerobacteridae; Sphaerobacterales; Sphaerobacterineae; Sphaerobacteraceae; Nitrolancea.;" sourc
ribonuclease BN; K07058 membrane protein
04302015_12_scaffold_76_4
Methylobacter tundripaludum, Methylobacter, Methylococcales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3288..4055)
DNA (768bp) protein (256aa)
PRC-barrel domain protein n=1 Tax=Methylobacter tundripaludum SV96 RepID=G3IVM4_9GAMM rbh
PRC-barrel domain protein {ECO:0000313|EMBL:EGW21761.1}; TaxID=697282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Methylococcales; Methylococcaceae; Methylobacter.;" source="Methylobacter
PRC-barrel domain-containing protein rbh
04302015_12_scaffold_76_5
Desulfotignum phosphitoxidans, Desulfotignum, Desulfobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4345..5676)
DNA (1332bp) protein (444aa)
Uncharacterized protein n=1 Tax=Desulfotignum phosphitoxidans DSM 13687 RepID=S0G2K2_9DELT rbh
Uncharacterized protein {ECO:0000313|EMBL:EMS81578.1}; TaxID=1286635 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfobacterales; Desulfobacteraceae; Desulfotignum.;" source="Desulfotign
hypothetical protein rbh
04302015_12_scaffold_76_6

Not on your lists

comp(5707..8076)
DNA (2370bp) protein (790aa)
Putative phosphoketolase {ECO:0000313|EMBL:CBI10726.1}; EC=4.1.2.- {ECO:0000313|EMBL:CBI10726.1};; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine dra
putative phosphoketolase (EC:4.1.2.22); K01632 fructose-6-phosphate phosphoketolase [EC:4.1.2.22]
Putative phosphoketolase n=1 Tax=mine drainage metagenome RepID=E6QU04_9ZZZZ
04302015_12_scaffold_76_7
uncultured Desulfobacterium sp., Desulfobacterium, Desulfobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8210..10357)
DNA (2148bp) protein (716aa)
heavy metal translocating P-type ATPase; K01533 Cu2+-exporting ATPase [EC:3.6.3.4] rbh
Copper-transporting P-type ATPase n=1 Tax=uncultured Desulfobacterium sp. RepID=E1YMF4_9DELT rbh
Copper-transporting P-type ATPase {ECO:0000313|EMBL:CBX31748.1}; TaxID=201089 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfobacterales; Desulfobacteraceae; Desulfobacterium; environme
04302015_12_scaffold_76_8
Rhodomicrobium udaipurense, Rhodomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10552..11409)
DNA (858bp) protein (286aa)
hypothetical protein n=1 Tax=Zavarzinella formosa RepID=UPI00037FD9B3 rbh
Uncharacterized protein {ECO:0000313|EMBL:KAI95611.1}; TaxID=858455 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Rhodomicrobium.;" source="Rhodomicrobium uda
hypothetical protein
04302015_12_scaffold_76_9
RBG_13_Actinobacteria_63_9_curated, Rubrobacteria, Actinobacteria, Bacteria

Not on your lists

comp(11461..11847)
DNA (387bp) protein (129aa)
Uncharacterized protein n=1 Tax=Methylomicrobium alcaliphilum (strain DSM 19304 / NCIMB 14124 / VKM B-2133 / 20Z) RepID=G4SX95_META2
hypothetical protein
Tax=RBG_13_Actinobacteria_63_9_curated
04302015_12_scaffold_76_10
GWB2_Geobacteraceae_52_12_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11900..12025)
DNA (126bp) protein (42aa)
Tax=GWB2_Geobacteraceae_52_12_curated
04302015_12_scaffold_76_11
Thioflavicoccus mobilis, Thioflavicoccus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12518..13648
DNA (1131bp) protein (377aa)
Conserved hypothetical integral membrane protein n=1 Tax=Thioflavicoccus mobilis 8321 RepID=L0GX13_9GAMM
hypothetical protein
Conserved hypothetical integral membrane protein {ECO:0000313|EMBL:AGA89910.1}; TaxID=765912 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Thioflavicoccus.;" sou
04302015_12_scaffold_76_12
Geoalkalibacter subterraneus, Geoalkalibacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13651..14418
DNA (768bp) protein (256aa)
ABC transporter related n=1 Tax=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) RepID=A0LKZ4_SYNFM rbh
Polyamine ABC transporter ATP-binding protein {ECO:0000313|EMBL:AJF05313.1}; TaxID=483547 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geoalkalibacter.;"
ABC transporter-like protein; K02065 putative ABC transport system ATP-binding protein rbh
04302015_12_scaffold_76_13
CG_Verruco_01, Verrucomicrobia, Bacteria

Not on your lists

14415..15425
DNA (1011bp) protein (337aa)
Mammalian cell entry related domain protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XGL6_9BACT
paraquat-inducible protein B
Tax=CG_Verruco_01
04302015_12_scaffold_76_14
unknown

Not on your lists

15422..15997
DNA (576bp) protein (192aa)

This feature has no annotations

04302015_12_scaffold_76_15
RIFOXYD12_FULL_Deltaproteobacteria_57_12_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15999..18602)
DNA (2604bp) protein (868aa)
alpha-glucan phosphorylase (EC:2.4.1.1)
alpha-glucan phosphorylase n=1 Tax=Thiobacillus thioparus RepID=UPI0003677C0E
Tax=RIFOXYD12_FULL_Deltaproteobacteria_57_12_curated
04302015_12_scaffold_76_16
Rhodopirellula baltica, Rhodopirellula, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(18571..19146)
DNA (576bp) protein (192aa)
Ribose/galactose isomerase {ECO:0000313|EMBL:EGF24369.1}; EC=5.3.1.- {ECO:0000313|EMBL:EGF24369.1};; TaxID=991778 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae
Ribose/galactose isomerase n=1 Tax=Rhodopirellula baltica WH47 RepID=F2B117_RHOBT
RpiB/LacA/LacB family sugar-phosphate isomerase
04302015_12_scaffold_76_17
Sulfuricella denitrificans, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19181..19726)
DNA (546bp) protein (182aa)
Flavin reductase domain FMN-binding protein n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6AIH7_9PROT
flavin reductase domain FMN-binding protein
Flavin reductase domain FMN-binding protein {ECO:0000313|EMBL:BAN36041.1}; TaxID=1163617 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" sourc
04302015_12_scaffold_76_18
[Oscillatoria] sp. PCC 6506, Kamptonema, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

comp(19736..20749)
DNA (1014bp) protein (338aa)
2-alkenal reductase (EC:1.3.1.74) rbh
Alcohol dehydrogenase, zinc-binding domain protein n=1 Tax=Oscillatoria sp. PCC 6506 RepID=D8G6K7_9CYAN rbh
Alcohol dehydrogenase, zinc-binding domain protein {ECO:0000313|EMBL:CBN58247.1}; TaxID=272129 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Kamptonema.;" source="[Oscillat
04302015_12_scaffold_76_19
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(21005..21616)
DNA (612bp) protein (204aa)
Uncharacterized protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D467_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EDY18668.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
hypothetical protein
04302015_12_scaffold_76_20
unknown

Not on your lists

comp(21613..21876)
DNA (264bp) protein (88aa)

This feature has no annotations

04302015_12_scaffold_76_21
Pseudomonas fluorescens, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22029..23486)
DNA (1458bp) protein (486aa)
hypothetical protein n=1 Tax=Pseudomonas sp. PAMC 26793 RepID=UPI0002EEBA55 rbh
YjeF {ECO:0000313|EMBL:EJZ58221.1}; TaxID=743713 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas fluorescens R124.;"
carbohydrate kinase rbh
04302015_12_scaffold_76_22
GWF2_Lentisphaerae_50_93_curated, Lentisphaerae, Bacteria

Not on your lists

comp(23493..24368)
DNA (876bp) protein (292aa)
Dehydrogenases with different specificities (Short-chain alcohol dehydrogenases-like protein) id=3656264 bin=GWF2_Lentisphaerae_50_93 species=Oxalobacteraceae bacterium IMCC9480 genus=unknown taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF2_Lentisphaerae_50_93 organism_group=Lentisphaerae organism_desc=gwf2_scaffold_392 has partial 16S rbh
short-chain dehydrogenase/reductase SDR rbh
Tax=GWF2_Lentisphaerae_50_93_curated
04302015_12_scaffold_76_23
Sphingomonas sanxanigenens, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24355..25737)
DNA (1383bp) protein (461aa)
aldehyde dehydrogenase; K00135 succinate-semialdehyde dehydrogenase (NADP+) [EC:1.2.1.16] rbh
Aldehyde dehydrogenase n=1 Tax=Herbaspirillum frisingense GSF30 RepID=R0FZP9_9BURK
Succinate-semialdehyde dehydrogenase {ECO:0000313|EMBL:AKH18880.1}; TaxID=1123269 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="S
04302015_12_scaffold_76_24
Methylomicrobium alcaliphilum, Methylomicrobium, Methylococcales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25773..26516)
DNA (744bp) protein (248aa)
PRC-barrel domain protein n=1 Tax=Methylomicrobium alcaliphilum (strain DSM 19304 / NCIMB 14124 / VKM B-2133 / 20Z) RepID=G4SX93_META2
PRC-barrel domain-containing protein
PRC-barrel domain protein {ECO:0000313|EMBL:CCE24249.1}; TaxID=1091494 species="Bacteria; Proteobacteria; Gammaproteobacteria; Methylococcales; Methylococcaceae; Methylomicrobium.;" source="Methylomic
04302015_12_scaffold_76_25
RBG_13_Actinobacteria_63_9_curated, Rubrobacteria, Actinobacteria, Bacteria

Not on your lists

comp(26608..27774)
DNA (1167bp) protein (389aa)
acetate kinase; K00925 acetate kinase [EC:2.7.2.1]
Acetate kinase n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QFN4_NITHX
Tax=RBG_13_Actinobacteria_63_9_curated
04302015_12_scaffold_76_26
unknown

Not on your lists

comp(27792..28091)
DNA (300bp) protein (100aa)

This feature has no annotations

04302015_12_scaffold_76_27
GWF2_Lentisphaerae_50_93_curated, Lentisphaerae, Bacteria

Not on your lists

comp(28273..30405)
DNA (2133bp) protein (711aa)
Putative signal transduction histidine kinase id=4324515 bin=GWF2_Lentisphaerae_50_93 species=Opitutaceae bacterium TAV5 genus=unknown taxon_order=unknown taxon_class=Opitutae phylum=Verrucomicrobia tax=GWF2_Lentisphaerae_50_93 organism_group=Lentisphaerae organism_desc=gwf2_scaffold_392 has partial 16S
histidine kinase
Tax=GWF2_Lentisphaerae_50_93_curated
04302015_12_scaffold_76_28
Opitutaceae bacterium TAV5, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

comp(30402..33122)
DNA (2721bp) protein (907aa)
MCP methyltransferase/methylesterase (EC:2.1.1.80 3.1.1.61); K13924 two-component system, chemotaxis family, CheB/CheR fusion protein [EC:2.1.1.80 3.1.1.61] rbh
Methylase of chemotaxis methyl-accepting protein n=1 Tax=Opitutaceae bacterium TAV1 RepID=I6AVJ2_9BACT rbh
Chemotaxis protein B {ECO:0000313|EMBL:AHF90322.1}; TaxID=794903 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae.;" source="Opitutaceae bacterium TAV5.;"
04302015_12_scaffold_76_29
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

33275..33496
DNA (222bp) protein (74aa)
hypothetical protein n=1 Tax=Verrucomicrobium spinosum RepID=UPI000174631F
17 kDa surface antigen {ECO:0000313|EMBL:ENN84176.1}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source
hypothetical protein
04302015_12_scaffold_76_30
unknown

Not on your lists

33524..33718
DNA (195bp) protein (65aa)

This feature has no annotations

Displaying items 1-30 of 79 in total

View Taxonomy