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04302015_12_scaffold_92

Search features with annotation key words

Displaying 30 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
04302015_12_scaffold_92_1
unknown

Not on your lists

1..108
DNA (108bp) protein (36aa)

This feature has no annotations

04302015_12_scaffold_92_2
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

217..771
DNA (555bp) protein (185aa)
Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase {ECO:0000313|EMBL:EDY17875.1}; EC=2.7.8.6 {ECO:0000313|EMBL:EDY17875.1};; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartoba
UDP-phosphate galactose phosphotransferase n=1 Tax=Verrucomicrobium spinosum RepID=UPI0001745D92
04302015_12_scaffold_92_3
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

823..1611
DNA (789bp) protein (263aa)
Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase {ECO:0000313|EMBL:EDY17875.1}; EC=2.7.8.6 {ECO:0000313|EMBL:EDY17875.1};; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartoba
exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase (EC:2.7.8.6)
UDP-phosphate galactose phosphotransferase n=1 Tax=Verrucomicrobium spinosum RepID=UPI0001745D92 rbh
04302015_12_scaffold_92_4
Nitrosomonas sp. Is79A3, Nitrosomonas, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1620..2510)
DNA (891bp) protein (297aa)
alternate F1F0 ATPase, F1 subunit gamma; K02115 F-type H+-transporting ATPase subunit gamma [EC:3.6.3.14] rbh
Alternate F1F0 ATPase, F1 subunit gamma n=1 Tax=Nitrosomonas sp. (strain Is79A3) RepID=F8GER1_NITSI rbh
Alternate F1F0 ATPase, F1 subunit gamma {ECO:0000313|EMBL:AEI99954.1}; TaxID=261292 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosomonas.;" source="
04302015_12_scaffold_92_5
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2507..4084)
DNA (1578bp) protein (526aa)
ATP synthase subunit alpha {ECO:0000256|HAMAP-Rule:MF_01346}; EC=3.6.3.14 {ECO:0000256|HAMAP-Rule:MF_01346};; ATP synthase F1 sector subunit alpha {ECO:0000256|HAMAP-Rule:MF_01346}; F-ATPase subunit a
F0F1 ATP synthase subunit alpha (EC:3.6.3.14); K02111 F-type H+-transporting ATPase subunit alpha [EC:3.6.3.14] rbh
ATP synthase subunit alpha 2 n=1 Tax=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) RepID=ATPA2_RHOFD rbh
04302015_12_scaffold_92_6
Rhodoferax ferrireducens, Rhodoferax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4081..4875)
DNA (795bp) protein (265aa)
H+-transporting two-sector ATPase, B/B' subunit; K02109 F-type H+-transporting ATPase subunit b [EC:3.6.3.14] rbh
ATP synthase subunit b 2 n=1 Tax=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) PF2_RHOFD">RepID=ATPF2_RHOFD rbh
ATP synthase subunit b 2 {ECO:0000255|HAMAP-Rule:MF_01398}; ATP synthase F(0) sector subunit b 2 {ECO:0000255|HAMAP-Rule:MF_01398}; ATPase subunit I 2 {ECO:0000255|HAMAP-Rule:MF_01398}; F-type ATPase
04302015_12_scaffold_92_7
Rhodoferax ferrireducens, Rhodoferax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4880..5161)
DNA (282bp) protein (94aa)
F0F1 ATP synthase subunit C; K02110 F-type H+-transporting ATPase subunit c [EC:3.6.3.14]
H+-transporting two-sector ATPase, C subunit n=1 Tax=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) RepID=Q21ZA1_RHOFD
H+-transporting two-sector ATPase, C subunit {ECO:0000313|EMBL:ABD68902.1}; Flags: Precursor;; TaxID=338969 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Rhod
04302015_12_scaffold_92_8
RIFOXYD12_FULL_Burkholderiales_59_19_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5176..5865)
DNA (690bp) protein (230aa)
F0F1 ATP synthase subunit A (EC:3.6.3.14); K02108 F-type H+-transporting ATPase subunit a [EC:3.6.3.14] rbh
ATP synthase subunit a n=1 Tax=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) RepID=ATP6_RHOFD rbh
Tax=RIFOXYD12_FULL_Burkholderiales_59_19_curated
04302015_12_scaffold_92_9
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5849..6151)
DNA (303bp) protein (101aa)
hypothetical protein n=1 Tax=Zavarzinella formosa RepID=UPI0002D89D10
ATPase F0F1 {ECO:0000313|EMBL:KIZ40240.1}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
F1/F0 ATPase, subunit 2
04302015_12_scaffold_92_10
Pseudomonas extremaustralis, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6141..6491)
DNA (351bp) protein (117aa)
ATP synthase n=1 Tax=Pseudomonas extremaustralis RepID=UPI000289CA88
ATP synthase {ECO:0000313|EMBL:EZI30089.1}; TaxID=1117958 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas extremaustralis
F0F1-ATPase; K02116 ATP synthase protein I
04302015_12_scaffold_92_11
Rhodoferax ferrireducens, Rhodoferax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6484..6882)
DNA (399bp) protein (133aa)
F0F1 ATP synthase subunit epsilon (EC:3.6.3.14); K02114 F-type H+-transporting ATPase subunit epsilon [EC:3.6.3.14]
H+-transporting two-sector ATPase, delta/epsilon subunit n=1 Tax=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) RepID=Q21ZA5_RHOFD
H+-transporting two-sector ATPase, delta/epsilon subunit {ECO:0000313|EMBL:ABD68898.1}; TaxID=338969 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Rhodoferax.
04302015_12_scaffold_92_12
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6879..8294)
DNA (1416bp) protein (472aa)
ATP synthase subunit beta {ECO:0000256|HAMAP-Rule:MF_01347}; EC=3.6.3.14 {ECO:0000256|HAMAP-Rule:MF_01347};; ATP synthase F1 sector subunit beta {ECO:0000256|HAMAP-Rule:MF_01347}; F-ATPase subunit bet
ATP synthase subunit beta; K02112 F-type H+-transporting ATPase subunit beta [EC:3.6.3.14] rbh
ATP synthase subunit beta n=1 Tax=Rhodopirellula sp. SWK7 RepID=M5TTF1_9PLAN rbh
04302015_12_scaffold_92_13
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

8533..10179
DNA (1647bp) protein (549aa)
X-Pro dipeptidyl-peptidase domain protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D7B5_9BACT rbh
X-Pro dipeptidyl-peptidase domain protein {ECO:0000313|EMBL:EDY17766.1}; Flags: Precursor;; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter fl
hydrolase, CocE/NonD family rbh
04302015_12_scaffold_92_14
RBG_13_Planctomycetes_60_9_curated, Phycisphaerae, Planctomycetes, Bacteria

Not on your lists

10193..11431
DNA (1239bp) protein (413aa)
cycloisomerase n=1 Tax=Schlesneria paludicola RepID=UPI00029B53A0 rbh
cycloisomerase rbh
Tax=RBG_13_Planctomycetes_60_9_curated
04302015_12_scaffold_92_15
Aeromonas molluscorum, Aeromonas, Aeromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11428..12003)
DNA (576bp) protein (192aa)
Uncharacterized protein n=1 Tax=Aeromonas molluscorum 848 RepID=R1F4S6_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EOD54812.1}; TaxID=1268236 species="Bacteria; Proteobacteria; Gammaproteobacteria; Aeromonadales; Aeromonadaceae; Aeromonas.;" source="Aeromonas molluscorum 8
hypothetical protein
04302015_12_scaffold_92_16
Opitutaceae bacterium TAV1, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

comp(12013..13206)
DNA (1194bp) protein (398aa)
Putative reductase OpiT1DRAFT_05467 {ECO:0000256|HAMAP-Rule:MF_01838}; EC=1.3.1.- {ECO:0000256|HAMAP-Rule:MF_01838};; TaxID=278956 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae
trans-2-enoyl-CoA reductase (EC:1.3.1.44)
trans-2-enoyl-CoA reductase n=1 Tax=Verrucomicrobium spinosum RepID=UPI0001746112
04302015_12_scaffold_92_17
RBG_16_Chloroflexi_57_11_curated, Chloroflexi, Bacteria

Not on your lists

13286..14050
DNA (765bp) protein (255aa)
Methyltransferase type 11 n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XSG5_9BACT
methylase
Tax=RBG_16_Chloroflexi_57_11_curated
04302015_12_scaffold_92_18
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(14056..14343)
DNA (288bp) protein (96aa)
translation initiation factor SUI1 n=1 Tax=Verrucomicrobium spinosum RepID=UPI0001744E88
Translation initiation factor SUI1 {ECO:0000313|EMBL:EDY17172.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
translation initiation factor SUI1; K03113 translation initiation factor 1
04302015_12_scaffold_92_19
Saccharicrinis fermentans, Saccharicrinis, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(14356..15423)
DNA (1068bp) protein (356aa)
hypothetical protein n=1 Tax=Verrucomicrobium spinosum RepID=UPI0001745086 rbh
Nucleoid-associated bacterial protein {ECO:0000313|EMBL:GAF02956.1}; TaxID=869213 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Marinilabiliaceae; Saccharicrinis.;" source="Saccharicri
hypothetical protein
04302015_12_scaffold_92_20
unknown

Not on your lists

15660..15959
DNA (300bp) protein (100aa)

This feature has no annotations

04302015_12_scaffold_92_21
unknown

Not on your lists

16206..16919
DNA (714bp) protein (238aa)

This feature has no annotations

04302015_12_scaffold_92_22
Coleofasciculus chthonoplastes, Coleofasciculus, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

16928..19075
DNA (2148bp) protein (716aa)
putative sensory box histidine kinase (EC:2.7.3.-); K00936 [EC:2.7.3.-]
PAS fold family n=1 Tax=Coleofasciculus chthonoplastes PCC 7420 RepID=B4VZF4_9CYAN
PAS fold family {ECO:0000313|EMBL:EDX72708.1}; TaxID=118168 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Coleofasciculus.;" source="Coleofasciculus chthonoplastes PCC 7420
04302015_12_scaffold_92_23
GWF2_Lentisphaerae_57_35_curated, Lentisphaerae, Bacteria

Not on your lists

19072..19749
DNA (678bp) protein (226aa)
Two component transcriptional regulator, LuxR family id=3692837 bin=GWF2_Lentisphaerae_57_35 species=Opitutus terrae genus=Opitutus taxon_order=unknown taxon_class=Opitutae phylum=Verrucomicrobia tax=GWF2_Lentisphaerae_57_35 organism_group=Lentisphaerae organism_desc=a459
two component LuxR family transcriptional regulator
Tax=GWF2_Lentisphaerae_57_35_curated
04302015_12_scaffold_92_24
Synechococcus sp. JA-3-3Ab, Synechococcus, Chroococcales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

19820..20902
DNA (1083bp) protein (361aa)
rrmJ; ribosomal RNA large subunit methytransferase J (EC:2.1.1.-); K00599 [EC:2.1.1.-]
Ribosomal RNA large subunit methytransferase J {ECO:0000313|EMBL:ABD00340.1}; EC=2.1.1.- {ECO:0000313|EMBL:ABD00340.1};; TaxID=321327 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococc
hypothetical protein n=1 Tax=Verrucomicrobium spinosum RepID=UPI00017458AB rbh
04302015_12_scaffold_92_25
RIFOXYB12_FULL_Lentisphaerae_65_16_curated, Lentisphaerae, Bacteria

Not on your lists

comp(20877..21122)
DNA (246bp) protein (82aa)
hypothetical protein n=1 Tax=Verrucomicrobium spinosum RepID=UPI0001746B22
Tax=RIFOXYB12_FULL_Lentisphaerae_65_16_curated
04302015_12_scaffold_92_26
unknown

Not on your lists

21482..22195
DNA (714bp) protein (238aa)

This feature has no annotations

04302015_12_scaffold_92_27
Candidatus Solibacter usitatus, Candidatus Solibacter, Solibacterales, Solibacteres, Acidobacteria, Bacteria

Not on your lists

22274..45373
DNA (23100bp) protein (7700aa)
Ig family protein n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q01TD0_SOLUE
Ig family protein {ECO:0000313|EMBL:ABJ87090.1}; Flags: Precursor;; TaxID=234267 species="Bacteria; Acidobacteria; Solibacteres; Solibacterales; Solibacteraceae; Candidatus Solibacter.;" source="Solib
Ig family protein
04302015_12_scaffold_92_28
unknown

Not on your lists

45627..45986
DNA (360bp) protein (120aa)
hypothetical protein n=1 Tax=Verrucomicrobium spinosum RepID=UPI00017446DE
04302015_12_scaffold_92_29
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

comp(46304..47374)
DNA (1071bp) protein (357aa)
DNA-binding protein n=1 Tax=Verrucomicrobium spinosum RepID=UPI000174535A rbh
excisionase family DNA binding domain-containing protein rbh
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
04302015_12_scaffold_92_30
Akkermansia sp. CAG:344, Akkermansia, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

47553..47717
DNA (165bp) protein (55aa)
phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; K01835 phosphoglucomutase [EC:5.4.2.2]
phosphomannomutase n=1 Tax=Verrucomicrobium spinosum RepID=UPI00017455DD
Phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I {ECO:0000313|EMBL:CDD93884.1}; TaxID=1262691 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Akkermansiaceae;
Displaying 30 items

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