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04302015_12_scaffold_449

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Displaying items 1-30 of 31 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
04302015_12_scaffold_449_1
RBG_16_Planctomycetes_64_10_curated, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(3..275)
DNA (273bp) protein (91aa)
hypothetical protein n=1 Tax=Verrucomicrobium spinosum RepID=UPI0001745279
hypothetical protein
Tax=RBG_16_Planctomycetes_64_10_curated
04302015_12_scaffold_449_2
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(362..3421)
DNA (3060bp) protein (1020aa)
dehydrogenase n=1 Tax=Verrucomicrobium spinosum RepID=UPI00017455FE rbh
Membrane-bound dehydrogenase domain protein {ECO:0000313|EMBL:EDY16385.1}; Flags: Precursor;; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter
membrane-bound dehydrogenase domain-containing protein rbh
04302015_12_scaffold_449_3
unknown

Not on your lists

3520..4035
DNA (516bp) protein (172aa)

This feature has no annotations

04302015_12_scaffold_449_4
Verrucomicrobia bacterium IMCC26134, Verrucomicrobia, Bacteria

Not on your lists

comp(4058..6226)
DNA (2169bp) protein (723aa)
adenylate/guanylate cyclase with Chase sensor; K01768 adenylate cyclase [EC:4.6.1.1] rbh
hypothetical protein n=1 Tax=Balneola vulgaris RepID=UPI00036F6122
Uncharacterized protein {ECO:0000313|EMBL:AKC82479.1}; TaxID=1637999 species="Bacteria; Verrucomicrobia; unclassified Verrucomicrobia.;" source="Verrucomicrobia bacterium IMCC26134.;"
04302015_12_scaffold_449_5
Opitutaceae bacterium TAV5, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

comp(6234..8000)
DNA (1767bp) protein (589aa)
Polypeptide-transport-associated domain protein ShlB-type n=1 Tax=Opitutaceae bacterium TAV5 RepID=H1ISX3_9BACT rbh
Peptide transporter {ECO:0000313|EMBL:AHF91089.1}; TaxID=794903 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae.;" source="Opitutaceae bacterium TAV5.;"
hypothetical protein
04302015_12_scaffold_449_6
Simkania negevensis, Simkania, Chlamydiales, Chlamydiia, Chlamydiae, Bacteria

Not on your lists

comp(8020..13212)
DNA (5193bp) protein (1731aa)
Uncharacterized protein n=1 Tax=Simkania negevensis (strain ATCC VR-1471 / Z) RepID=F8L3U6_SIMNZ
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCB89971.1}; TaxID=331113 species="Bacteria; Chlamydiae; Chlamydiales; Simkaniaceae; Simkania.;" source="Simkania negevensis (strain ATCC VR-1471 / Z).;"
04302015_12_scaffold_449_7
RBG_16_Gamma2_64_11_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13336..14304)
DNA (969bp) protein (323aa)
hypothetical protein
Tax=RBG_16_Gamma2_64_11_curated
04302015_12_scaffold_449_8
unknown

Not on your lists

14735..14977
DNA (243bp) protein (81aa)
hypothetical protein n=1 Tax=Verrucomicrobium spinosum RepID=UPI000174506C
04302015_12_scaffold_449_9
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists


15079..15564
DNA (486bp) protein (162aa)
50S ribosomal protein L9 n=1 Tax=Verrucomicrobium spinosum RepID=UPI00017450C5
50S ribosomal protein L9 {ECO:0000256|HAMAP-Rule:MF_00503}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
50S ribosomal protein L9; K02939 large subunit ribosomal protein L9
04302015_12_scaffold_449_10
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

15820..16857
DNA (1038bp) protein (346aa)
4,5-dihydroxyphthalate dehydrogenase n=1 Tax=Verrucomicrobium spinosum RepID=UPI0001744B87 rbh
Oxidoreductase domain protein {ECO:0000313|EMBL:EEF59116.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source
oxidoreductase
04302015_12_scaffold_449_11
RBG_16_Planctomycetes_64_12_curated, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(17010..17462)
DNA (453bp) protein (151aa)
hypothetical protein n=1 Tax=Rubritalea marina RepID=UPI00037C5237
sorbitol dehydrogenase
Tax=RBG_16_Planctomycetes_64_12_curated
04302015_12_scaffold_449_12
unknown

Not on your lists

17479..18081
DNA (603bp) protein (201aa)

This feature has no annotations

04302015_12_scaffold_449_13
Micavibrio aeruginosavorus, Micavibrio, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18265..19164
DNA (900bp) protein (300aa)
Sterol desaturase n=1 Tax=Verrucomicrobium spinosum RepID=UPI00017469A3 rbh
Sterol desaturase rbh
Sterol desaturase {ECO:0000313|EMBL:AGH97297.1}; TaxID=349215 species="Bacteria; Proteobacteria; Alphaproteobacteria; Micavibrio.;" source="Micavibrio aeruginosavorus EPB.;"
04302015_12_scaffold_449_trna_1
unknown

Not on your lists

19241..19312
DNA (72bp)
transferRNA
04302015_12_scaffold_449_14
Catenovulum agarivorans, Catenovulum, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19449..20036)
DNA (588bp) protein (196aa)
DNA mismatch repair protein MutT n=1 Tax=Verrucomicrobium spinosum RepID=UPI00017450C4
Nudix hydrolase {ECO:0000313|EMBL:EWH11578.1}; TaxID=1328313 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Alteromonadaceae; Catenovulum.;" source="Catenovulum agarivorans D
NUDIX hydrolase
04302015_12_scaffold_449_15
Streptomyces cattleya, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(20374..21414)
DNA (1041bp) protein (347aa)
Uncharacterized protein n=1 Tax=Streptomyces cattleya (strain ATCC 35852 / DSM 46488 / JCM 4925 / NBRC 14057 / NRRL 8057) RepID=F8JNZ1_STREN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEW93932.1}; TaxID=1003195 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces cattleya (strain ATCC
04302015_12_scaffold_449_16
unknown

Not on your lists

comp(21666..22325)
DNA (660bp) protein (220aa)

This feature has no annotations

04302015_12_scaffold_449_17
Methyloceanibacter caenitepidi, Methyloceanibacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22390..22929)
DNA (540bp) protein (180aa)
Periplasmic chorismate mutase I {ECO:0000313|EMBL:BAQ18222.1}; EC=5.4.99.5 {ECO:0000313|EMBL:BAQ18222.1};; TaxID=1384459 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylocea
putative chorismate mutase (EC:5.4.99.5)
Uncharacterized protein n=2 Tax=Labrenzia RepID=U7G9W8_9RHOB
04302015_12_scaffold_449_18
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(22953..24650)
DNA (1698bp) protein (566aa)
Cyclic nucleotide-regulated FAD-dependent pyridine nucleotide-disulphide oxidoreductase {ECO:0000313|EMBL:EDY18992.1}; EC=1.8.1.9 {ECO:0000313|EMBL:EDY18992.1};; TaxID=497964 species="Bacteria; Verruc
thioredoxin reductase n=1 Tax=Verrucomicrobium spinosum RepID=UPI0001744E51 rbh
thioredoxin reductase rbh
04302015_12_scaffold_449_19
Akkermansia muciniphila CAG:154, Akkermansia, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

24842..25891
DNA (1050bp) protein (350aa)
tRNA-specific 2-thiouridylase MnmA {ECO:0000256|HAMAP-Rule:MF_00144}; EC=2.8.1.- {ECO:0000256|HAMAP-Rule:MF_00144};; TaxID=1263034 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobia
mnmA; tRNA-specific 2-thiouridylase MnmA (EC:2.1.1.61); K00566 tRNA-specific 2-thiouridylase [EC:2.8.1.-] rbh
thiouridylase n=1 Tax=Verrucomicrobium spinosum RepID=UPI00017450C1 rbh
04302015_12_scaffold_449_20
Caldilinea aerophila, Caldilinea, Caldilineales, Caldilineae, Chloroflexi, Bacteria

Not on your lists

25888..27054
DNA (1167bp) protein (389aa)
Putative sarcosine oxidase n=1 Tax=Caldilinea aerophila (strain DSM 14535 / JCM 11387 / NBRC 104270 / STL-6-O1) RepID=I0I987_CALAS rbh
putative sarcosine oxidase rbh
Putative sarcosine oxidase {ECO:0000313|EMBL:BAM01825.1}; TaxID=926550 species="Bacteria; Chloroflexi; Caldilineae; Caldilineales; Caldilineaceae; Caldilinea.;" source="Caldilinea aerophila (strain DS
04302015_12_scaffold_449_21
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27261..28115)
DNA (855bp) protein (285aa)
Uncharacterized protein n=5 Tax=Escherichia coli RepID=L3PRC4_ECOLX
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EQP49847.1}; TaxID=1281011 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia c
04302015_12_scaffold_449_22
unknown

Not on your lists

comp(28232..29110)
DNA (879bp) protein (293aa)

This feature has no annotations

04302015_12_scaffold_449_23
Verrucomicrobiae bacterium DG1235, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(29354..29812)
DNA (459bp) protein (153aa)
Glyoxalase family protein n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JEW8_9BACT
Glyoxalase family protein {ECO:0000313|EMBL:EDY83472.1}; TaxID=382464 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales.;" source="Verrucomicrobiae bacterium DG1235.;"
glyoxalase/bleomycin resistance protein/dioxygenase superfamily protein
04302015_12_scaffold_449_24
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(29895..30872)
DNA (978bp) protein (326aa)
Helix-turn-helix type 11 domain protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D3V6_9BACT rbh
Helix-turn-helix type 11 domain protein {ECO:0000313|EMBL:EDY18936.1}; Flags: Precursor;; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flav
helix-turn-helix type 11 domain-containing protein
04302015_12_scaffold_449_25
Verrucomicrobiae bacterium DG1235, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(30869..31426)
DNA (558bp) protein (186aa)
Putative uncharacterized protein n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JNA0_9BACT
Putative uncharacterized protein {ECO:0000313|EMBL:EDY80826.1}; TaxID=382464 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales.;" source="Verrucomicrobiae bacterium DG1235.;"
hypothetical protein
04302015_12_scaffold_449_26
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(31452..31730)
DNA (279bp) protein (93aa)
Putative uncharacterized protein n=1 Tax=Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114) RepID=C6VV29_DYAFD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACT94852.1}; TaxID=471854 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Dyadobacter.;" source="Dyadobacter fermentans (strain ATC
04302015_12_scaffold_449_27
Rhodopirellula baltica, Rhodopirellula, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(31754..31999)
DNA (246bp) protein (82aa)
Protein containing DUF820 n=2 Tax=Rhodopirellula baltica RepID=F2AX13_RHOBT
Protein containing DUF820 {ECO:0000313|EMBL:EGF25790.1}; TaxID=991778 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Rhodopirellula.;" source="Rhodopirellula b
hypothetical protein
04302015_12_scaffold_449_28
Opitutaceae bacterium TAV5, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

comp(32069..33763)
DNA (1695bp) protein (565aa)
ABC transporter permease n=1 Tax=Verrucomicrobium spinosum RepID=UPI0001744648 rbh
ABC transporter permease {ECO:0000313|EMBL:AHF92833.1}; TaxID=794903 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae.;" source="Opitutaceae bacterium TAV5.;"
binding-protein-dependent transport system inner membrane protein; K02011 iron(III) transport system permease protein rbh
04302015_12_scaffold_449_29
Verrucomicrobia bacterium IMCC26134, Verrucomicrobia, Bacteria

Not on your lists

comp(33776..35461)
DNA (1686bp) protein (562aa)
extracellular solute-binding protein, family 1 n=1 Tax=Verrucomicrobium spinosum RepID=UPI0001744646 rbh
Iron ABC transporter substrate-binding protein {ECO:0000313|EMBL:AKC82386.1}; TaxID=1637999 species="Bacteria; Verrucomicrobia; unclassified Verrucomicrobia.;" source="Verrucomicrobia bacterium IMCC26
Fe3+ ABC transporter periplasmic component-like protein
Displaying items 1-30 of 31 in total

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