ggKbase home page

You do not have permission to do that.

Please email help@ggkbase.berkeley.edu for help.

04302015_21_scaffold_29

Search features with annotation key words

Displaying items 1-30 of 64 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
04302015_21_scaffold_29_1
unknown

Not on your lists

3..200
DNA (198bp) protein (66aa)

This feature has no annotations

04302015_21_scaffold_29_2
Rhodospirillum centenum, Rhodospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(197..1312)
DNA (1116bp) protein (372aa)
L-allo-threonine aldolase n=1 Tax=Rhodospirillum centenum (strain ATCC 51521 / SW) RepID=B6IXD0_RHOCS
L-allo-threonine aldolase
L-allo-threonine aldolase {ECO:0000313|EMBL:ACJ00954.1}; TaxID=414684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Rhodospirillum.;" source="Rhodospirillum centenum (strain ATCC 51521 / SW).;"
04302015_21_scaffold_29_3
Acidiphilium sp. PM, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1475..2305
DNA (831bp) protein (277aa)
VacJ family lipoprotein n=1 Tax=Acidiphilium cryptum (strain JF-5) RepID=A5FV16_ACICJ
putative VacJ family lipoprotein; K04754 lipoprotein
VacJ family lipoprotein {ECO:0000313|EMBL:EGO94782.1}; TaxID=1043206 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium sp. PM.;"
04302015_21_scaffold_29_4
Acidiphilium sp. PM, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2295..3122
DNA (828bp) protein (276aa)
VacJ family lipoprotein n=2 Tax=Acidiphilium RepID=F7S7U4_9PROT rbh
VacJ family lipoprotein; K04754 lipoprotein rbh
VacJ family lipoprotein {ECO:0000313|EMBL:EGO94782.1}; TaxID=1043206 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium sp. PM.;"
04302015_21_scaffold_29_5
Acidiphilium sp. PM, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3125..3763
DNA (639bp) protein (213aa)
Toluene tolerance family protein n=2 Tax=Acidiphilium RepID=A5FV17_ACICJ
toluene tolerance family protein
Toluene tolerance family protein {ECO:0000313|EMBL:EGO94781.1}; TaxID=1043206 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium sp. PM.;"
04302015_21_scaffold_29_6
Acidiphilium multivorum, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3720..4442)
DNA (723bp) protein (241aa)
putative methyltransferase (EC:2.1.1.-)
Putative methyltransferase {ECO:0000313|EMBL:BAJ81171.1}; EC=2.1.1.- {ECO:0000313|EMBL:BAJ81171.1};; TaxID=926570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium multivorum (strain DSM 11245 / JCM 8867 / NBRC 100883 /; AIU301).;"
Putative methyltransferase n=1 Tax=Acidiphilium multivorum (strain DSM 11245 / JCM 8867 / AIU301) RepID=F0IZG1_ACIMA
04302015_21_scaffold_29_7
Acidiphilium sp. JA12-A1, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4474..5226
DNA (753bp) protein (251aa)
Hydroxyacylglutathione hydrolase {ECO:0000256|HAMAP-Rule:MF_01374, ECO:0000256|SAAS:SAAS00035352}; EC=3.1.2.6 {ECO:0000256|HAMAP-Rule:MF_01374, ECO:0000256|SAAS:SAAS00035352};; Glyoxalase II {ECO:0000256|HAMAP-Rule:MF_01374}; TaxID=1464546 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium sp. JA12-A1.;"
gloB; hydroxyacylglutathione hydrolase (EC:3.1.2.6)
Hydroxyacylglutathione hydrolase n=3 Tax=Acidiphilium RepID=F0IZG2_ACIMA
04302015_21_scaffold_29_8
Acidiphilium sp. JA12-A1, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5301..6128)
DNA (828bp) protein (276aa)
CHAP domain-containing protein n=1 Tax=Acidiphilium sp. PM RepID=F7S5M8_9PROT
hypothetical protein
CHAP domain containing protein {ECO:0000313|EMBL:KDM66190.1}; TaxID=1464546 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium sp. JA12-A1.;"
04302015_21_scaffold_29_9
Acidiphilium multivorum, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6426..7130
DNA (705bp) protein (235aa)
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; K00991 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [EC:2.7.7.60]
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase {ECO:0000256|HAMAP-Rule:MF_00108, ECO:0000256|SAAS:SAAS00030493}; EC=2.7.7.60 {ECO:0000256|HAMAP-Rule:MF_00108, ECO:0000256|SAAS:SAAS00030493};; 4-diphosphocytidyl-2C-methyl-D-erythritol synthase {ECO:0000256|HAMAP-Rule:MF_00108}; MEP cytidylyltransferase {ECO:0000256|HAMAP-Rule:MF_00108}; TaxID=926570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium multivorum (strain DSM
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase n=3 Tax=Acidiphilium RepID=A5FVZ3_ACICJ
04302015_21_scaffold_29_10
Acidiphilium sp. PM, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7204..7554)
DNA (351bp) protein (117aa)
Endoribonuclease L-PSP n=3 Tax=Acidiphilium RepID=A5G1T1_ACICJ
endoribonuclease L-PSP
Endoribonuclease L-PSP {ECO:0000313|EMBL:EGO95555.1}; TaxID=1043206 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium sp. PM.;"
04302015_21_scaffold_29_11
Gluconobacter oxydans, Gluconobacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7502..9163)
DNA (1662bp) protein (554aa)
Outer membrane protein n=1 Tax=Gluconobacter oxydans H24 RepID=K7SPP1_GLUOY rbh
glycosyltransferase rbh
Outer membrane protein {ECO:0000313|EMBL:AFW02178.1}; TaxID=1224746 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Gluconobacter.;" source="Gluconobacter oxydans H24.;"
04302015_21_scaffold_29_12
Methylobacterium nodulans, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9171..10715)
DNA (1545bp) protein (515aa)
Uncharacterized protein n=1 Tax=Methylobacterium nodulans (strain ORS2060 / LMG 21967) RepID=B8IUH9_METNO
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACL57047.1}; TaxID=460265 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium nodulans (strain ORS2060 / LMG 21967).;"
04302015_21_scaffold_29_13
Acidiphilium cryptum, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10868..12676)
DNA (1809bp) protein (603aa)
Collagen triple helix repeat protein n=1 Tax=Acidiphilium cryptum (strain JF-5) RepID=A5FXP6_ACICJ
triple helix repeat-containing collagen
Collagen triple helix repeat protein {ECO:0000313|EMBL:ABQ30378.1}; TaxID=349163 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium cryptum (strain JF-5).;"
04302015_21_scaffold_29_14
Acidiphilium sp. JA12-A1, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12879..13313)
DNA (435bp) protein (145aa)
Uncharacterized protein n=4 Tax=Acidiphilium RepID=A5FYD9_ACICJ
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KDM66302.1}; TaxID=1464546 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium sp. JA12-A1.;"
04302015_21_scaffold_29_15
Acidiphilium multivorum, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13412..13963
DNA (552bp) protein (184aa)
hslV; ATP-dependent protease subunit HslV (EC:3.4.25.-); K01419 ATP-dependent HslUV protease, peptidase subunit HslV [EC:3.4.25.2] rbh
ATP-dependent protease subunit HslV {ECO:0000256|HAMAP-Rule:MF_00248, ECO:0000256|SAAS:SAAS00019556}; EC=3.4.25.2 {ECO:0000256|HAMAP-Rule:MF_00248, ECO:0000256|SAAS:SAAS00019493};; TaxID=926570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium multivorum (strain DSM 11245 / JCM 8867 / NBRC 100883 /; AIU301).;"
ATP-dependent protease subunit HslV n=3 Tax=Acidiphilium RepID=HSLV_ACICJ rbh
04302015_21_scaffold_29_16
Acidiphilium sp. JA12-A1, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13960..15279
DNA (1320bp) protein (440aa)
ATP-dependent protease ATPase subunit HslU n=3 Tax=Acidiphilium RepID=A5FYD7_ACICJ
hslU; ATP-dependent protease ATPase subunit HslU; K03667 ATP-dependent HslUV protease ATP-binding subunit HslU
ATP-dependent protease ATPase subunit HslU {ECO:0000256|HAMAP-Rule:MF_00249, ECO:0000256|SAAS:SAAS00089650}; Unfoldase HslU {ECO:0000256|HAMAP-Rule:MF_00249}; TaxID=1464546 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium sp. JA12-A1.;"
04302015_21_scaffold_29_17
Acidiphilium multivorum, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15286..16140
DNA (855bp) protein (285aa)
gluQ; putative glutamyl-Q-tRNA(Asp) synthetase (EC:6.1.1.-); K01894 glutamyl-Q tRNA(Asp) synthetase [EC:6.1.1.-]
Putative glutamyl-Q-tRNA(Asp) synthetase {ECO:0000313|EMBL:BAJ80718.1}; EC=6.1.1.- {ECO:0000313|EMBL:BAJ80718.1};; TaxID=926570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium multivorum (strain DSM 11245 / JCM 8867 / NBRC 100883 /; AIU301).;"
Putative glutamyl-Q-tRNA(Asp) synthetase n=1 Tax=Acidiphilium multivorum (strain DSM 11245 / JCM 8867 / AIU301) RepID=F0IY58_ACIMA
04302015_21_scaffold_29_18
Acidiphilium sp. JA12-A1, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16137..17522
DNA (1386bp) protein (462aa)
Putative periplasmic serine endoprotease DegP {ECO:0000313|EMBL:KDM65343.1}; EC=3.4.21.107 {ECO:0000313|EMBL:KDM65343.1};; TaxID=1464546 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium sp. JA12-A1.;"
2-alkenal reductase (EC:1.3.1.74); K08070 2-alkenal reductase [EC:1.3.1.74] rbh
2-alkenal reductase n=2 Tax=Acidiphilium RepID=A5FY53_ACICJ rbh
04302015_21_scaffold_29_19
Acidocella sp. MX-AZ02, Acidocella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17433..20237)
DNA (2805bp) protein (935aa)
Uncharacterized protein (Fragment) n=1 Tax=Acidocella sp. MX-AZ02 RepID=K5YN80_9PROT
Uncharacterized protein {ECO:0000313|EMBL:EKN00297.1}; Flags: Fragment;; TaxID=1214225 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidocella.;" source="Acidocella sp. MX-AZ02.;"
hypothetical protein
04302015_21_scaffold_29_20
Acidiphilium sp. JA12-A1, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20291..22930
DNA (2640bp) protein (880aa)
DNA mismatch repair protein MutS n=1 Tax=Acidiphilium multivorum (strain DSM 11245 / JCM 8867 / AIU301) RepID=F0J665_ACIMA rbh
DNA mismatch repair protein MutS {ECO:0000256|SAAS:SAAS00184333}; TaxID=1464546 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium sp. JA12-A1.;"
mutS; DNA mismatch repair protein MutS; K03555 DNA mismatch repair protein MutS rbh
04302015_21_scaffold_29_21
Acidiphilium sp. JA12-A1, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22935..25733
DNA (2799bp) protein (933aa)
PII uridylyl-transferase (EC:2.7.7.59); K00990 [protein-PII] uridylyltransferase [EC:2.7.7.59] rbh
Bifunctional uridylyltransferase/uridylyl-removing enzyme n=2 Tax=Acidiphilium RepID=A5FX01_ACICJ rbh
Bifunctional uridylyltransferase/uridylyl-removing enzyme {ECO:0000256|HAMAP-Rule:MF_00277, ECO:0000256|SAAS:SAAS00228994}; Short=UTase/UR {ECO:0000256|HAMAP-Rule:MF_00277};; Bifunctional [protein-PII] modification enzyme {ECO:0000256|HAMAP-Rule:MF_00277}; Bifunctional nitrogen sensor protein {ECO:0000256|HAMAP-Rule:MF_00277}; TaxID=1464546 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium sp. JA12-A1.;"
04302015_21_scaffold_29_22
Acidiphilium sp. PM, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25871..27850
DNA (1980bp) protein (660aa)
Outer membrane autotransporter n=1 Tax=Acidiphilium sp. PM RepID=F7S4L6_9PROT rbh
Outer membrane autotransporter {ECO:0000313|EMBL:EGO95933.1}; TaxID=1043206 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium sp. PM.;"
outer membrane autotransporter rbh
04302015_21_scaffold_29_trna_1
unknown

Not on your lists

27959..28040
DNA (82bp)
transferRNA
04302015_21_scaffold_29_23
Acidiphilium sp. PM, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28092..29414
DNA (1323bp) protein (441aa)
Trigger factor {ECO:0000256|HAMAP-Rule:MF_00303, ECO:0000256|RuleBase:RU003914}; Short=TF {ECO:0000256|HAMAP-Rule:MF_00303};; EC=5.2.1.8 {ECO:0000256|HAMAP-Rule:MF_00303};; PPIase {ECO:0000256|HAMAP-Rule:MF_00303}; TaxID=1043206 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium sp. PM.;"
Trigger factor n=2 Tax=Acidiphilium RepID=TIG_ACICJ rbh
tig; trigger factor; K03545 trigger factor rbh
04302015_21_scaffold_29_24
Acidiphilium multivorum, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29537..30193
DNA (657bp) protein (219aa)
clpP; ATP-dependent Clp protease proteolytic subunit (EC:3.4.21.92); K01358 ATP-dependent Clp protease, protease subunit [EC:3.4.21.92] rbh
ATP-dependent Clp protease proteolytic subunit {ECO:0000256|HAMAP-Rule:MF_00444, ECO:0000256|RuleBase:RU003567}; EC=3.4.21.92 {ECO:0000256|HAMAP-Rule:MF_00444, ECO:0000256|RuleBase:RU000549};; Endopeptidase Clp {ECO:0000256|HAMAP-Rule:MF_00444}; TaxID=926570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium multivorum (strain DSM 11245 / JCM 8867 / NBRC 100883 /; AIU301).;"
ATP-dependent Clp protease proteolytic subunit n=3 Tax=Acidiphilium RepID=A5FX04_ACICJ rbh
04302015_21_scaffold_29_25
Acidiphilium sp. JA12-A1, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30293..31549
DNA (1257bp) protein (419aa)
ATP-dependent Clp protease ATP-binding subunit ClpX n=3 Tax=Acidiphilium RepID=CLPX_ACICJ
clpX; ATP-dependent protease ATP-binding subunit ClpX; K03544 ATP-dependent Clp protease ATP-binding subunit ClpX
ATP-dependent Clp protease ATP-binding subunit ClpX {ECO:0000256|HAMAP-Rule:MF_00175, ECO:0000256|SAAS:SAAS00063387}; TaxID=1464546 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium sp. JA12-A1.;"
04302015_21_scaffold_29_26
Acidiphilium sp. PM, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31709..34141
DNA (2433bp) protein (811aa)
Lon protease {ECO:0000256|HAMAP-Rule:MF_01973, ECO:0000256|PIRNR:PIRNR001174}; EC=3.4.21.53 {ECO:0000256|HAMAP-Rule:MF_01973, ECO:0000256|PIRNR:PIRNR001174};; ATP-dependent protease La {ECO:0000256|HAMAP-Rule:MF_01973}; TaxID=1043206 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium sp. PM.;"
ATP-dependent protease La (EC:3.4.21.53); K01338 ATP-dependent Lon protease [EC:3.4.21.53] rbh
Lon protease n=3 Tax=Acidiphilium RepID=A5FX06_ACICJ rbh
04302015_21_scaffold_29_27
Acidiphilium sp. JA12-A1, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

34373..34645
DNA (273bp) protein (91aa)
Histone family protein DNA-binding protein n=3 Tax=Acidiphilium RepID=A5FX07_ACICJ
DNA-binding protein HU-1 {ECO:0000313|EMBL:KDM67654.1}; TaxID=1464546 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium sp. JA12-A1.;"
histone-like DNA-binding protein; K03530 DNA-binding protein HU-beta
04302015_21_scaffold_29_trna_2
unknown

Not on your lists

34717..34788
DNA (72bp)
transferRNA
04302015_21_scaffold_29_trna_3
unknown

Not on your lists

34888..34961
DNA (74bp)
transferRNA
Displaying items 1-30 of 64 in total

View Taxonomy