ggKbase home page

04302015_21_scaffold_874

Search features with annotation key words

Displaying 9 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
04302015_21_scaffold_874_1
unknown

Not on your lists

2..199
DNA (198bp) protein (66aa)

This feature has no annotations

04302015_21_scaffold_874_2
Candidatus Contendobacter odensis, Candidatus Contendobacter, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(124..558)
DNA (435bp) protein (145aa)
Peptide methionine sulfoxide reductase MsrB {ECO:0000256|HAMAP-Rule:MF_01400}; EC=1.8.4.12 {ECO:0000256|HAMAP-Rule:MF_01400};; Peptide-methionine (R)-S-oxide reductase {ECO:0000256|HAMAP-Rule:MF_01400}; TaxID=1400861 species="Bacteria; Proteobacteria; Gammaproteobacteria; Competibacteraceae; Candidatus Contendobacter.;" source="Candidatus Contendobacter odensis Run_B_J11.;"
methionine-R-sulfoxide reductase
Peptide methionine sulfoxide reductase MsrB id=1789189 bin=GWD2_Deltaproteobacteria_55_8 species=Nitrosospira multiformis genus=Nitrosospira taxon_order=Nitrosomonadales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
04302015_21_scaffold_874_3
RBG_13_Planctomycetes_63_9_curated, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(567..1322)
DNA (756bp) protein (252aa)
Xylose isomerase domain protein TIM barrel n=1 Tax=Pirellula staleyi (strain ATCC 27377 / DSM 6068 / ICPB 4128) RepID=D2R6D0_PIRSD
xylose isomerase
Tax=RBG_13_Planctomycetes_63_9_curated
04302015_21_scaffold_874_4
RBG_13_Planctomycetes_63_9_curated, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

1532..2605
DNA (1074bp) protein (358aa)
signal peptide peptidase SppA, 36K type; K04773 protease IV [EC:3.4.21.-] rbh
Signal peptide peptidase SppA, 36K type n=1 Tax=Pirellula staleyi (strain ATCC 27377 / DSM 6068 / ICPB 4128) RepID=D2R6C9_PIRSD rbh
Tax=RBG_13_Planctomycetes_63_9_curated
04302015_21_scaffold_874_5
unknown

Not on your lists

comp(2660..2941)
DNA (282bp) protein (94aa)

This feature has no annotations

04302015_21_scaffold_874_6

Not on your lists

3285..3578
DNA (294bp) protein (98aa)
Uncharacterized protein n=1 Tax=Pirellula staleyi (strain ATCC 27377 / DSM 6068 / ICPB 4128) RepID=D2R1P2_PIRSD
Uncharacterized protein {ECO:0000313|EMBL:KKL64123.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
hypothetical protein
04302015_21_scaffold_874_7
RBG_16_Planctomycetes_64_10_curated, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

3614..3817
DNA (204bp) protein (68aa)
Carbon storage regulator, CsrA n=1 Tax=Pirellula staleyi (strain ATCC 27377 / DSM 6068 / ICPB 4128) RepID=D2R1P3_PIRSD
carbon storage regulator CsrA
Tax=RBG_16_Planctomycetes_64_10_curated
04302015_21_scaffold_874_8
Pirellula staleyi, Pirellula, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(3988..4251)
DNA (264bp) protein (88aa)
ArsR family transcriptional regulator n=1 Tax=Gemmata obscuriglobus RepID=UPI00016C556A
ArsR family transcriptional regulator
Transcriptional regulator, ArsR family {ECO:0000313|EMBL:ADB16090.1}; TaxID=530564 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Pirellula.;" source="Pirellula staleyi (strain ATCC 27377 / DSM 6068 / ICPB 4128) (Pirella; staleyi).;"
04302015_21_scaffold_874_9
Cyclobacterium qasimii, Cyclobacterium, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(4619..7243)
DNA (2625bp) protein (875aa)
hypothetical protein n=1 Tax=Verrucomicrobia bacterium SCGC AAA164-E04 RepID=UPI00037A8D60 rbh
Uncharacterized protein {ECO:0000313|EMBL:EPR67634.1}; TaxID=641524 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cyclobacteriaceae; Cyclobacterium.;" source="Cyclobacterium qasimii M12-11B.;"
twin-arginine translocation pathway signal rbh
Displaying 9 items

View Taxonomy