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GOSHIP-P18_170_1_13_153S_1017m_2_114

Search features with annotation key words

Displaying items 1-30 of 49 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
GOSHIP-P18_170_1_13_153S_1017m_2_114_1
Magnetospira sp. QH-2, Magnetospira, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2..436)
-----------------
DNA (435bp)
protein (145aa)
tolR_exbD; Membrane spanning protein TolR/ExbD
Biopolymer transport protein n=1 Tax=alpha proteobacterium BAL199 RepID=A8TXF0_9PROT
Membrane spanning protein TolR/ExbD {ECO:0000313|EMBL:CCQ73315.1}; TaxID=1288970 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospira.;" source="Magnetospira sp. QH-2.;"
GOSHIP-P18_170_1_13_153S_1017m_2_114_2
Magnetospirillum gryphiswaldense, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(436..1167)
-----------------
DNA (732bp)
protein (244aa)
tolQ; TolQ protein
TolQ protein n=1 Tax=Magnetospirillum gryphiswaldense MSR-1 v2 RepID=V6EXR7_9PROT
TolQ protein {ECO:0000313|EMBL:CDK97994.1}; TaxID=1430440 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospirillum.;" source="Magnetospirillum gryphiswaldense MSR-1 v2.;"
GOSHIP-P18_170_1_13_153S_1017m_2_114_3
RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1169..1600)
-----------------
DNA (432bp)
protein (144aa)
small, thioesterase-like enzyme subunit
Small, thioesterase-like enzyme subunit, putative n=1 Tax=Rhodospirillum centenum (strain ATCC 51521 / SW) RepID=B6ITI3_RHOCS
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
GOSHIP-P18_170_1_13_153S_1017m_2_114_4
Rhodomicrobium udaipurense, Rhodomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1604..2710)
-----------------
DNA (1107bp)
protein (369aa)
Holliday junction DNA helicase RuvB
Holliday junction ATP-dependent DNA helicase RuvB n=1 Tax=Rhodomicrobium vannielii (strain ATCC 17100 / ATH 3.1.1 / DSM 162 / LMG 4299) RepID=E3I219_RHOVT
Holliday junction ATP-dependent DNA helicase RuvB {ECO:0000256|HAMAP-Rule:MF_00016}; EC=3.6.4.12 {ECO:0000256|HAMAP-Rule:MF_00016};; TaxID=858455 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Rhodomicrobium.;" source="Rhodomicrobium udaipurense JA643.;"
GOSHIP-P18_170_1_13_153S_1017m_2_114_5
Magnetospira sp. QH-2, Magnetospira, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2710..3315)
-----------------
DNA (606bp)
protein (202aa)
ruvA; Component of RuvABC resolvasome, regulatory subunit (EC:3.1.22.4)
hypothetical protein n=1 Tax=Kiloniella laminariae RepID=UPI00037EE59A
Holliday junction ATP-dependent DNA helicase RuvA {ECO:0000256|HAMAP-Rule:MF_00031, ECO:0000256|SAAS:SAAS00058935}; EC=3.6.4.12 {ECO:0000256|HAMAP-Rule:MF_00031, ECO:0000256|SAAS:SAAS00058896};; TaxID=1288970 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospira.;" source="Magnetospira sp. QH-2.;"
GOSHIP-P18_170_1_13_153S_1017m_2_114_6
Azorhizobium caulinodans, Azorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3312..3827)
-----------------
DNA (516bp)
protein (172aa)
ruvC; Holliday junction resolvase
Crossover junction endodeoxyribonuclease RuvC n=1 Tax=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) RepID=RUVC_AZOC5
Crossover junction endodeoxyribonuclease RuvC {ECO:0000255|HAMAP-Rule:MF_00034}; EC=3.1.22.4 {ECO:0000255|HAMAP-Rule:MF_00034};; Holliday junction nuclease RuvC {ECO:0000255|HAMAP-Rule:MF_00034}; Holliday junction resolvase RuvC {ECO:0000255|HAMAP-Rule:MF_00034}; TaxID=438753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Azorhizobium.;" source="Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / JCM 20966 /; NBRC 14845 / NCIMB 13405 / ORS 571).;"
GOSHIP-P18_170_1_13_153S_1017m_2_114_7
Acetobacter pasteurianus, Acetobacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3834..4583)
-----------------
DNA (750bp)
protein (250aa)
hypothetical protein
Probable transcriptional regulatory protein APA386B_1434 n=2 Tax=Acetobacter pasteurianus RepID=S6CXJ9_ACEPA
Probable transcriptional regulatory protein APA386B_1434 {ECO:0000256|HAMAP-Rule:MF_00693}; TaxID=1266844 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acetobacter.;" source="Acetobacter pasteurianus 386B.;"
GOSHIP-P18_170_1_13_153S_1017m_2_114_8
Thalassospira profundimaris, Thalassospira, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4722..5534)
-----------------
DNA (813bp)
protein (271aa)
metallophosphoesterase
Metallophosphoesterase n=1 Tax=Thalassospira profundimaris WP0211 RepID=K2KNC9_9PROT
Metallophosphoesterase {ECO:0000313|EMBL:EKF07279.1}; TaxID=1177928 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Thalassospira.;" source="Thalassospira profundimaris WP0211.;"
GOSHIP-P18_170_1_13_153S_1017m_2_114_9
RIFCSPLOWO2_12_FULL_Rhodospirillales_58_28_curated, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5578..6093)
-----------------
DNA (516bp)
protein (172aa)
5-formyltetrahydrofolate cyclo-ligase
5-formyltetrahydrofolate cyclo-ligase n=1 Tax=Fodinicurvata sediminis RepID=UPI0003B5FB53
Tax=RIFCSPLOWO2_12_FULL_Rhodospirillales_58_28_curated
GOSHIP-P18_170_1_13_153S_1017m_2_114_10
RIFCSPLOWO2_12_FULL_Rhodospirillales_67_15_curated, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6431..6793)
-----------------
DNA (363bp)
protein (121aa)
hypothetical protein
hypothetical protein n=1 Tax=Thalassospira lucentensis RepID=UPI0003B300AC
Tax=RIFCSPLOWO2_12_FULL_Rhodospirillales_67_15_curated
GOSHIP-P18_170_1_13_153S_1017m_2_114_11
unknown

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comp(6786..7058)
-----------------
DNA (273bp)
protein (91aa)

This feature has no annotations

GOSHIP-P18_170_1_13_153S_1017m_2_114_12
Phyllobacterium sp. YR531, Phyllobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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7197..9314
-----------------
DNA (2118bp)
protein (706aa)
transketolase
transketolase n=1 Tax=Fodinicurvata sediminis RepID=UPI0003B315EE
Transketolase {ECO:0000256|RuleBase:RU004996}; EC=2.2.1.1 {ECO:0000256|RuleBase:RU004996};; TaxID=1144343 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Phyllobacterium.;" source="Phyllobacterium sp. YR531.;"
GOSHIP-P18_170_1_13_153S_1017m_2_114_13
Nitratireductor aquibiodomus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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9370..10329
-----------------
DNA (960bp)
protein (320aa)
glyceraldehyde-3-phosphate dehydrogenase
Glyceraldehyde-3-phosphate dehydrogenase n=1 Tax=Nitratireductor aquibiodomus RA22 RepID=I5C014_9RHIZ
Glyceraldehyde-3-phosphate dehydrogenase {ECO:0000256|RuleBase:RU361160}; EC=1.2.1.- {ECO:0000256|RuleBase:RU361160};; TaxID=1189611 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor aquibiodomus RA22.;"
GOSHIP-P18_170_1_13_153S_1017m_2_114_14
Caenispirillum salinarum, Caenispirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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10295..11545
-----------------
DNA (1251bp)
protein (417aa)
pgk; phosphoglycerate kinase (EC:2.7.2.3)
phosphoglycerate kinase n=1 Tax=Novispirillum itersonii RepID=UPI0003741600
Phosphoglycerate kinase {ECO:0000256|HAMAP-Rule:MF_00145, ECO:0000256|RuleBase:RU000532}; EC=2.7.2.3 {ECO:0000256|HAMAP-Rule:MF_00145, ECO:0000256|RuleBase:RU000532};; TaxID=1238182 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Caenispirillum.;" source="Caenispirillum salinarum AK4.;"
GOSHIP-P18_170_1_13_153S_1017m_2_114_15
unknown

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11553..11990
-----------------
DNA (438bp)
protein (146aa)

This feature has no annotations

GOSHIP-P18_170_1_13_153S_1017m_2_114_16
Azospirillum brasilense, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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11993..12688
-----------------
DNA (696bp)
protein (232aa)
thiE2; thiamine-phosphate synthase
Thiamine-phosphate synthase n=1 Tax=Azospirillum brasilense Sp245 RepID=G8AMY7_AZOBR
Thiamine-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00097, ECO:0000256|RuleBase:RU003826}; Short=TP synthase {ECO:0000256|HAMAP-Rule:MF_00097};; Short=TPS {ECO:0000256|HAMAP-Rule:MF_00097};; EC=2.5.1.3 {ECO:0000256|HAMAP-Rule:MF_00097, ECO:0000256|RuleBase:RU003826};; Thiamine-phosphate pyrophosphorylase {ECO:0000256|HAMAP-Rule:MF_00097, ECO:0000256|RuleBase:RU003826}; TaxID=1064539 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum brasilense Sp245.;"
GOSHIP-P18_170_1_13_153S_1017m_2_114_17
Thalassospira profundimaris, Thalassospira, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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12768..13334
-----------------
DNA (567bp)
protein (189aa)
elongation factor P
Elongation factor P n=1 Tax=Thalassospira profundimaris WP0211 RepID=K2LAV2_9PROT
Elongation factor P {ECO:0000256|HAMAP-Rule:MF_00141}; Short=EF-P {ECO:0000256|HAMAP-Rule:MF_00141};; TaxID=1177928 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Thalassospira.;" source="Thalassospira profundimaris WP0211.;"
GOSHIP-P18_170_1_13_153S_1017m_2_114_18
Oceanibaculum indicum, Oceanibaculum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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13362..14156
-----------------
DNA (795bp)
protein (265aa)
inositol monophosphatase
Inositol monophosphatase n=1 Tax=Oceanibaculum indicum P24 RepID=K2KBR8_9PROT
Inositol monophosphatase {ECO:0000313|EMBL:EKE74810.1}; TaxID=1207063 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Oceanibaculum.;" source="Oceanibaculum indicum P24.;"
GOSHIP-P18_170_1_13_153S_1017m_2_114_19
Thalassospira xiamenensis, Thalassospira, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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14259..15302
-----------------
DNA (1044bp)
protein (348aa)
lysophospholipase
Lysophospholipase n=1 Tax=Thalassospira xiamenensis M-5 = DSM 17429 RepID=K2LXC4_9PROT
Lysophospholipase {ECO:0000313|EMBL:AJD51532.1}; TaxID=1123366 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Thalassospira.;" source="Thalassospira xiamenensis M-5 = DSM 17429.;"
GOSHIP-P18_170_1_13_153S_1017m_2_114_20
Skermanella aerolata, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15361..16464
-----------------
DNA (1104bp)
protein (368aa)
Conserved protein of unknown function; putative biopolymer transport exbB protein; putative membrane protein
Uncharacterized protein n=1 Tax=Oceanibaculum indicum P24 RepID=K2JK38_9PROT
Flagellar motor protein MotA {ECO:0000313|EMBL:KJB95959.1}; TaxID=1385368 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella aerolata KACC 11604.;"
GOSHIP-P18_170_1_13_153S_1017m_2_114_21
Thalassospira permensis, Thalassospira, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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16506..17657
-----------------
DNA (1152bp)
protein (384aa)
hypothetical protein
Uncharacterized protein n=1 Tax=Thalassospira xiamenensis M-5 = DSM 17429 RepID=K2KVH6_9PROT
Flagellar motor protein MotB {ECO:0000313|EMBL:KEO55069.1}; TaxID=1353532 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Thalassospira.;" source="Thalassospira permensis NBRC 106175.;"
GOSHIP-P18_170_1_13_153S_1017m_2_114_22
Rhodospirillum centenum, Rhodospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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17661..18386
-----------------
DNA (726bp)
protein (242aa)
hypothetical protein
hypothetical protein n=1 Tax=Fodinicurvata sediminis RepID=UPI0003B3E3DC
Uncharacterized protein {ECO:0000313|EMBL:ACI98784.1}; TaxID=414684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Rhodospirillum.;" source="Rhodospirillum centenum (strain ATCC 51521 / SW).;"
GOSHIP-P18_170_1_13_153S_1017m_2_114_23
Magnetospira sp. QH-2, Magnetospira, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(18436..19557)
-----------------
DNA (1122bp)
protein (374aa)
Conserved protein of unknown function. Containing FAD dependent oxidoreductase domain
Putative FAD dependent oxidoreductase n=1 Tax=Azospirillum lipoferum (strain 4B) RepID=G7ZEI9_AZOL4
Uncharacterized protein {ECO:0000313|EMBL:CCQ74311.1}; TaxID=1288970 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospira.;" source="Magnetospira sp. QH-2.;"
GOSHIP-P18_170_1_13_153S_1017m_2_114_24
Alkalilimnicola ehrlichii, Alkalilimnicola, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(19579..22743)
-----------------
DNA (3165bp)
protein (1055aa)
acriflavin resistance protein
hypothetical protein n=1 Tax=Elioraea tepidiphila RepID=UPI00036FB7EF
Acriflavin resistance protein {ECO:0000313|EMBL:ABI56536.1}; TaxID=187272 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Alkalilimnicola.;" source="Alkalilimnicola ehrlichii (strain ATCC BAA-1101 / DSM 17681 / MLHE-1).;"
GOSHIP-P18_170_1_13_153S_1017m_2_114_25
Rhodospirillum centenum, Rhodospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(22761..23921)
-----------------
DNA (1161bp)
protein (387aa)
HlyD family secretion protein
HlyD family secretion protein n=1 Tax=Rhodospirillum centenum (strain ATCC 51521 / SW) RepID=B6IWD3_RHOCS
HlyD family secretion protein {ECO:0000313|EMBL:ACJ00607.1}; TaxID=414684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Rhodospirillum.;" source="Rhodospirillum centenum (strain ATCC 51521 / SW).;"
GOSHIP-P18_170_1_13_153S_1017m_2_114_26
alpha proteobacterium BAL199, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24145..25065
-----------------
DNA (921bp)
protein (307aa)
acetoin utilization protein
Histone deacetylase superfamily protein n=1 Tax=alpha proteobacterium BAL199 RepID=A8U2X6_9PROT
Histone deacetylase superfamily protein {ECO:0000313|EMBL:EDP61486.1}; TaxID=331869 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium BAL199.;"
GOSHIP-P18_170_1_13_153S_1017m_2_114_27
Tistrella mobilis, Tistrella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(25195..25668)
-----------------
DNA (474bp)
protein (158aa)
omp; 17 kDa surface antigen
17 kDa surface antigen n=1 Tax=Tistrella mobilis (strain KA081020-065) RepID=I3TJ88_TISMK
17 kDa surface antigen {ECO:0000313|EMBL:AFK52826.1}; TaxID=1110502 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Tistrella.;" source="Tistrella mobilis (strain KA081020-065).;"
GOSHIP-P18_170_1_13_153S_1017m_2_114_28
Magnetospirillum magnetotacticum, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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25835..26425
-----------------
DNA (591bp)
protein (197aa)
pyridoxamine 5'-phosphate oxidase (EC:1.4.3.5)
Pyridoxine/pyridoxamine 5'-phosphate oxidase n=2 Tax=Magnetospirillum magneticum RepID=PDXH_MAGSA
Pyridoxine/pyridoxamine 5'-phosphate oxidase {ECO:0000256|HAMAP-Rule:MF_01629}; EC=1.4.3.5 {ECO:0000256|HAMAP-Rule:MF_01629, ECO:0000256|SAAS:SAAS00025317};; PNP/PMP oxidase {ECO:0000256|HAMAP-Rule:MF_01629}; Pyridoxal 5'-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_01629}; TaxID=272627 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospirillum.;" source="Magnetospirillum magnetotacticum MS-1.;"
GOSHIP-P18_170_1_13_153S_1017m_2_114_29
RIFCSPLOWO2_01_FULL_Rhodospirillales_65_14_curated, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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26519..27394
-----------------
DNA (876bp)
protein (292aa)
Co/Zn/Cd cation transporter
Co/Zn/Cd cation transporter n=1 Tax=Magnetospirillum sp. SO-1 RepID=M3AC41_9PROT
Tax=RIFCSPLOWO2_01_FULL_Rhodospirillales_65_14_curated
GOSHIP-P18_170_1_13_153S_1017m_2_114_30
Skermanella stibiiresistens, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27488..29131)
-----------------
DNA (1644bp)
protein (548aa)
hypothetical protein
Uncharacterized protein n=1 Tax=Oceanibaculum indicum P24 RepID=K2KE10_9PROT
4-diphosphocytidyl-2C-methyl-D-erythritol kinase {ECO:0000313|EMBL:EWY36205.1}; TaxID=1385369 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella stibiiresistens SB22.;"
Displaying items 1-30 of 49 in total

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