ggKbase home page

ar4r2_scaffold_962

Search features with annotation key words

Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ar4r2_scaffold_962_1
RBG_16_Ignavibacteria_34_14_curated, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

Not on your lists

comp(3..329)
DNA (327bp) protein (109aa)
Fumarate hydratase class II n=1 Tax=Ignavibacterium album (strain DSM 19864 / JCM 16511 / NBRC 101810 / Mat9-16) RepID=I0AN85_IGNAJ
fumC; fumarase
Tax=RBG_16_Ignavibacteria_34_14_curated
partial. Fumarase or general lyase? Jill Banfield (11/27/16)
ar4r2_scaffold_962_2
Photobacterium sp. AK15, Photobacterium, Vibrionales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(331..1053)
DNA (723bp) protein (241aa)
hypothetical protein n=1 Tax=gamma proteobacterium SCGC AB-629-P17 RepID=UPI0003773270
3-demethylubiquinone-9 3-methyltransferase {ECO:0000313|EMBL:ELR67882.1}; TaxID=1056511 species="Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Photobacterium.;" source="Photobacterium sp. AK15.;"
hypothetical protein
Interpro: DomainIPR029063S-adenosyl-L-methionine-dependent methyltransferase Domain NCBI: methyltransferase domain, possibly inovled in ubiquinone biosynthesis (UbiG) Jill Banfield (11/9/16)
ar4r2_scaffold_962_3
CG_GN02-02, Gracilibacteria, Bacteria

Not on your lists

comp(1057..1905)
DNA (849bp) protein (283aa)
dTDP-4-dehydrorhamnose reductase; K00067 dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133] id=982975 bin=RAAC1_SR1 species=RAAC1_SR1 genus=RAAC1_SR1 taxon_order=RAAC1_SR1 taxon_class=RAAC1_SR1 phylum=SR1 tax=RAAC1_SR1 organism_group=SR1 rbh
hypothetical protein
Tax=CG_GN02-02
ar4r2_scaffold_962_4
Fusobacterium ulcerans, Fusobacterium, Fusobacteriales, Fusobacteriia, Fusobacteria, Bacteria

Not on your lists

comp(2022..3068)
DNA (1047bp) protein (349aa)
dTDP-4-dehydrorhamnose 3,5-epimerase n=1 Tax=Fusobacterium ulcerans ATCC 49185 RepID=V9HP00_9FUSO
dTDP-4-dehydrorhamnose 3,5-epimerase
dTDP-4-dehydrorhamnose 3,5-epimerase {ECO:0000313|EMBL:EFS25103.1}; TaxID=469617 species="Bacteria; Fusobacteria; Fusobacteriales; Fusobacteriaceae; Fusobacterium.;" source="Fusobacterium ulcerans ATCC 49185.;"
5.1.3.13 Streptomycin biosynthesis Jill Banfield (11/9/16)
ar4r2_scaffold_962_5
Pseudoalteromonas sp. BSi20429, Pseudoalteromonas, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3068..3940)
DNA (873bp) protein (291aa)
Glucose-1-phosphate thymidylyltransferase {ECO:0000256|RuleBase:RU003706}; EC=2.7.7.24 {ECO:0000256|RuleBase:RU003706};; TaxID=1097676 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Pseudoalteromonadaceae; Pseudoalteromonas.;" source="Pseudoalteromonas sp. BSi20429.;"
glucose-1-phosphate thymidylyltransferase (EC:2.7.7.24) rbh
Glucose-1-phosphate thymidylyltransferase n=1 Tax=Pseudoalteromonas sp. BSi20429 RepID=G7F2E8_9GAMM rbh
Streptomycin biosynthesis Jill Banfield (11/9/16)
ar4r2_scaffold_962_6
Gimesia maris, Gimesia, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(3998..4567)
DNA (570bp) protein (190aa)
Uncharacterized protein n=1 Tax=Planctomyces maris DSM 8797 RepID=A6BZ10_9PLAN
Uncharacterized protein {ECO:0000313|EMBL:EDL62305.1}; TaxID=344747 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Gimesia.;" source="Gimesia maris DSM 8797.;"
hypothetical protein
ar4r2_scaffold_962_7

Not on your lists

comp(4704..6113)
DNA (1410bp) protein (470aa)
gym:GYMC10_5806 dTDP-glucose 4,6-dehydratase; K01710 dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] id=131745 bin=ACD80 species=ACD80 genus=ACD80 taxon_order=ACD80 taxon_class=ACD80 phylum=SR1 tax=ACD80 organism_group=SR1 rbh
Uncharacterized protein {ECO:0000313|EMBL:EKD24807.1}; TaxID=1234023 species="Bacteria; environmental samples.;" source="uncultured bacterium (gcode 4).;"
hypothetical protein
ar4r2_scaffold_962_8

Not on your lists

comp(6161..7678)
DNA (1518bp) protein (506aa)
polysaccharide biosynthesis protein id=123787 bin=ACD78 species=ACD78 genus=ACD78 taxon_order=ACD78 taxon_class=ACD78 phylum=BD1-5 tax=ACD78 organism_group=BD1-5 (Gracilibacteria) organism_desc=BD1-5 rbh
Polysaccharide biosynthesis protein {ECO:0000313|EMBL:EKD30317.1}; TaxID=1234023 species="Bacteria; environmental samples.;" source="uncultured bacterium (gcode 4).;"
polysaccharide biosynthesis protein
14 TM domains. Wzx, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins Escherichia coli Wzx and related proteins from other gram-negative bacteria are thought to act as flippases, assisting in the membrane translocation of lipopolysaccharides including those containing O-antigens. Proteins from the MATE family are involved in exporting metabolites across the cell membrane and are often responsible for multidrug resistance (MDR). Jill Banfield (11/9/16)
ar4r2_scaffold_962_9

Not on your lists

7843..11076
DNA (3234bp) protein (1078aa)
transmembrane_regions 7..26 id=69188 bin=ACD49 species=ACD49 genus=ACD49 taxon_order=ACD49 taxon_class=ACD49 phylum=BD1-5 tax=ACD49 organism_group=BD1-5 (Gracilibacteria) organism_desc=BD1-5 rbh
Uncharacterized protein {ECO:0000313|EMBL:EKD66012.1}; TaxID=1234023 species="Bacteria; environmental samples.;" source="uncultured bacterium (gcode 4).;"
22 transmembrane domains and non-cytoplasmic C terminus. Domain: Magnesium-transporting ATPase (P-type) [Inorganic ion transport and metabolism]; Jill Banfield (11/9/16)
ar4r2_scaffold_962_10
unknown

Not on your lists

11084..11332
DNA (249bp) protein (83aa)
hypothetical protein
GF15955 gene product from transcript GF15955-RA; K03926 periplasmic divalent cation tolerance protein id=983546 bin=RAAC1_SR1 species=RAAC1_SR1 genus=RAAC1_SR1 taxon_order=RAAC1_SR1 taxon_class=RAAC1_SR1 phylum=SR1 tax=RAAC1_SR1 organism_group=SR1
ar4r2_scaffold_962_11

Not on your lists

comp(11413..12165)
DNA (753bp) protein (251aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K1Z2M6_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EKD43521.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
FAD synthetase
ar4r2_scaffold_962_12

Not on your lists

12278..12814
DNA (537bp) protein (179aa)
Peptidyl-tRNA hydrolase {ECO:0000256|HAMAP-Rule:MF_00083, ECO:0000256|RuleBase:RU000673}; Short=PTH {ECO:0000256|HAMAP-Rule:MF_00083};; EC=3.1.1.29 {ECO:0000256|HAMAP-Rule:MF_00083, ECO:0000256|RuleBase:RU000673};; TaxID=1234023 species="Bacteria; environmental samples.;" source="uncultured bacterium (gcode 4).;"
pth; peptidyl-tRNA hydrolase (EC:3.1.1.29)
Peptidyl-tRNA hydrolase n=1 Tax=uncultured bacterium (gcode 4) RepID=K1YP06_9BACT
ar4r2_scaffold_962_13

Not on your lists

12909..14186
DNA (1278bp) protein (426aa)
ATPase; K07133 id=132573 bin=ACD80 species=ACD80 genus=ACD80 taxon_order=ACD80 taxon_class=ACD80 phylum=SR1 tax=ACD80 organism_group=SR1
Uncharacterized protein {ECO:0000313|EMBL:EKD25437.1}; TaxID=1234023 species="Bacteria; environmental samples.;" source="uncultured bacterium (gcode 4).;"
hypothetical protein
ar4r2_scaffold_962_14
R_OD1_Falkowbacteria_39_13, Falkowbacteria, Parcubacteria, Bacteria

Not on your lists

14249..15475
DNA (1227bp) protein (409aa)
hypothetical protein n=1 Tax=Omnitrophica bacterium SCGC AAA252-B19 RepID=UPI00036E1E4C rbh
putative ATPase (AAA+ superfamily)
Tax=RIFCSPHIGHO2_02_FULL_OD1_Falkowbacteria_39_13_curated
ar4r2_scaffold_962_15
Epilithonimonas sp. FH1, Epilithonimonas, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(16028..16672)
DNA (645bp) protein (215aa)
riboflavin synthase subunit alpha n=1 Tax=Empedobacter brevis RepID=UPI0003797A72
riboflavin synthase subunit alpha
Riboflavin synthase subunit alpha {ECO:0000313|EMBL:KFC18895.1}; TaxID=1233951 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Epilithonimonas.;" source="Epilithonimonas sp. FH1.;"
ar4r2_scaffold_962_16
CG_GN02-02, Gracilibacteria, Bacteria

Not on your lists

comp(16739..18010)
DNA (1272bp) protein (424aa)
Histidine--tRNA ligase n=1 Tax=uncultured bacterium (gcode 4) RepID=K2GFW5_9BACT rbh
histidyl-tRNA synthetase
Tax=CG_GN02-02
ar4r2_scaffold_962_17
CG_GN02-02, Gracilibacteria, Bacteria

Not on your lists

18236..19447
DNA (1212bp) protein (404aa)
Uncharacterized protein n=1 Tax=uncultured bacterium (gcode 4) RepID=K2BBN5_9BACT
RIP metalloprotease RseP
Tax=CG_GN02-02
ar4r2_scaffold_962_18

Not on your lists

19463..20077
DNA (615bp) protein (205aa)
Metal-dependent phosphohydrolase n=1 Tax=uncultured bacterium (gcode 4) RepID=K2A2D5_9BACT
Metal-dependent phosphohydrolase {ECO:0000313|EMBL:EKD44129.1}; TaxID=1234023 species="Bacteria; environmental samples.;" source="uncultured bacterium (gcode 4).;"
metal dependent phosphohydrolase
ar4r2_scaffold_962_19

Not on your lists

20102..21298
DNA (1197bp) protein (399aa)
hau:Haur_0632 queuine tRNA-ribosyltransferase (EC:2.4.2.29); K00773 queuine tRNA-ribosyltransferase [EC:2.4.2.29] id=124436 bin=ACD78 species=ACD78 genus=ACD78 taxon_order=ACD78 taxon_class=ACD78 phylum=BD1-5 tax=ACD78 organism_group=BD1-5 (Gracilibacteria) organism_desc=BD1-5 rbh
Queuine tRNA-ribosyltransferase {ECO:0000256|HAMAP-Rule:MF_00168, ECO:0000256|RuleBase:RU003777}; EC=2.4.2.29 {ECO:0000256|HAMAP-Rule:MF_00168, ECO:0000256|RuleBase:RU003777};; Guanine insertion enzyme {ECO:0000256|HAMAP-Rule:MF_00168}; tRNA-guanine transglycosylase {ECO:0000256|HAMAP-Rule:MF_00168}; TaxID=1234023 species="Bacteria; environmental samples.;" source="uncultured bacterium (gcode 4).;"
queuine tRNA-ribosyltransferase (EC:2.4.2.29) rbh
ar4r2_scaffold_962_20
unknown

Not on your lists

21525..21794
DNA (270bp) protein (90aa)

This feature has no annotations

Displaying 20 items

View Taxonomy