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ar4r2_scaffold_2004

Search features with annotation key words

Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ar4r2_scaffold_2004_1
RIFCSPLOWO2_12_FULL_Bacteroidetes_35_15_curated, Bacteroidetes, Bacteria

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3..224
DNA (222bp) protein (74aa)
hypothetical protein n=1 Tax=Gracilimonas tropica RepID=UPI00036B0F44
Tax=RIFCSPLOWO2_12_FULL_Bacteroidetes_35_15_curated
ar4r2_scaffold_2004_2

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724..972
DNA (249bp) protein (83aa)
seg 3..25 id=69294 bin=ACD49 species=ACD49 genus=ACD49 taxon_order=ACD49 taxon_class=ACD49 phylum=BD1-5 tax=ACD49 organism_group=BD1-5 (Gracilibacteria) organism_desc=BD1-5
Uncharacterized protein {ECO:0000313|EMBL:EKD65787.1}; TaxID=1234023 species="Bacteria; environmental samples.;" source="uncultured bacterium (gcode 4).;"
ar4r2_scaffold_2004_3

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974..2092
DNA (1119bp) protein (373aa)
Uncharacterized protein n=1 Tax=uncultured bacterium (gcode 4) RepID=K1XZ99_9BACT rbh
Uncharacterized protein {ECO:0000313|EMBL:EKD30301.1}; TaxID=1234023 species="Bacteria; environmental samples.;" source="uncultured bacterium (gcode 4).;"
ar4r2_scaffold_2004_4
unknown

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2102..2506
DNA (405bp) protein (135aa)

This feature has no annotations

ar4r2_scaffold_2004_5
ACD78, Gracilibacteria, Bacteria

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2617..3543
DNA (927bp) protein (309aa)
transmembrane_regions 12..31 id=124578 bin=ACD78 species=ACD78 genus=ACD78 taxon_order=ACD78 taxon_class=ACD78 phylum=BD1-5 tax=ACD78 organism_group=BD1-5 (Gracilibacteria) organism_desc=BD1-5
Tax=ACD78
ar4r2_scaffold_2004_6

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3555..4559
DNA (1005bp) protein (335aa)
Pseudouridine synthase {ECO:0000256|RuleBase:RU362028}; EC=5.4.99.- {ECO:0000256|RuleBase:RU362028};; TaxID=1234023 species="Bacteria; environmental samples.;" source="uncultured bacterium (gcode 4).;"
ribosomal large subunit pseudouridine synthase D (EC:5.4.99.-)
Pseudouridine synthase n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9Y836_9FIRM id=50216 bin=ACD3 species=Holdemania filiformis genus=Holdemania taxon_order=Erysipelotrichales taxon_class=Erysipelotrichia phylum=Firmicutes tax=ACD3 organism_group=BD1-5 (Gracilibacteria) organism_desc=BD1-5 rbh
ar4r2_scaffold_2004_7

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4780..5376
DNA (597bp) protein (199aa)
transmembrane_regions 36..53 id=34373 bin=ACD2 species=ACD2 genus=ACD2 taxon_order=ACD2 taxon_class=ACD2 phylum=BD1-5 tax=ACD2 organism_group=BD1-5 (Gracilibacteria) organism_desc=BD1-5
Uncharacterized protein {ECO:0000313|EMBL:EKE29437.1}; TaxID=1234023 species="Bacteria; environmental samples.;" source="uncultured bacterium (gcode 4).;"
ar4r2_scaffold_2004_8

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5670..6431
DNA (762bp) protein (254aa)
Uncharacterized protein n=1 Tax=uncultured bacterium (gcode 4) RepID=K2G7D2_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EKE25989.1}; TaxID=1234023 species="Bacteria; environmental samples.;" source="uncultured bacterium (gcode 4).;"
type IV pilus biogenesis protein PilI-like protein
ar4r2_scaffold_2004_9
R_Peregrinibacteria_39_12, Peregrinibacteria, Bacteria

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6497..7417
DNA (921bp) protein (307aa)
Protein-(Glutamine-N5) methyltransferase n=1 Tax=Blautia hansenii DSM 20583 RepID=C9LA44_RUMHA id=18462 bin=ACD20 species=Blautia hansenii genus=Blautia taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=ACD20 organism_group=Novel_Cyano/Firm organism_desc=Novel_Cyano/Firm
protein-(glutamine-N5) methyltransferase, release factor-specific
Tax=RIFCSPLOWO2_01_FULL_Peregrinibacteria_39_12_curated
ar4r2_scaffold_2004_10
R_Dadabacteria_53_21, Dadabacteria, Bacteria

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7428..8756
DNA (1329bp) protein (443aa)
UPI0003CFD89E related cluster n=1 Tax=unknown RepID=UPI0003CFD89E rbh
hypothetical protein
Tax=RIFCSPHIGHO2_12_FULL_Dadabacteria_53_21_curated
ar4r2_scaffold_2004_11
RHI_Verrucumicrobia_41_10, Verrucomicrobiae, Verrucomicrobia, Bacteria

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comp(8787..9149)
DNA (363bp) protein (121aa)
hypothetical protein n=1 Tax=Staphylococcus vitulinus RepID=UPI0002E64BE1
hypothetical protein
Tax=RIFCSPHIGHO2_12_FULL_Verrucumicrobia_41_10_curated
ar4r2_scaffold_2004_12
Verrucomicrobiae bacterium DG1235, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

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comp(9168..10433)
DNA (1266bp) protein (422aa)
Pyridoxal-dependent decarboxylase, C-terminal sheet domain protein n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JFX5_9BACT rbh
Pyridoxal-dependent decarboxylase, C-terminal sheet domain protein {ECO:0000313|EMBL:EDY81437.1}; TaxID=382464 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales.;" source="Verrucomicrobiae bacterium DG1235.;"
diaminopimelate decarboxylase rbh
ar4r2_scaffold_2004_13
GWD2_Clostridiales_32_59_curated, Clostridiales, Bacteria

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comp(10438..11286)
DNA (849bp) protein (283aa)
dapF; diaminopimelate epimerase (EC:5.1.1.7)
Diaminopimelate epimerase n=1 Tax=Thermodesulfovibrio yellowstonii (strain ATCC 51303 / DSM 11347 / YP87) RepID=B5YL43_THEYD
Tax=GWD2_Clostridiales_32_59_curated
ar4r2_scaffold_2004_14
Candidatus Scalindua brodae, Candidatus Scalindua, Candidatus Brocadiales, Planctomycetia, Planctomycetes, Bacteria

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comp(11319..12443)
DNA (1125bp) protein (375aa)
Homoserine dehydrogenase n=1 Tax=Chryseobacterium sp. CF314 RepID=J2KST6_9FLAO
Homoserine dehydrogenase {ECO:0000313|EMBL:KHE92629.1}; TaxID=237368 species="Bacteria; Planctomycetes; Planctomycetia; Candidatus Brocadiales; Candidatus Brocadiaceae; Candidatus Scalindua.;" source="Candidatus Scalindua brodae.;"
homoserine dehydrogenase
ar4r2_scaffold_2004_15
CG_GN02-02, Gracilibacteria, Bacteria

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comp(12455..13819)
DNA (1365bp) protein (455aa)
rxy:Rxyl_3175 succinate-semialdehyde dehydrogenase (NAD(P)+) (EC:1.2.1.16); K00135 succinate-semialdehyde dehydrogenase (NADP+) [EC:1.2.1.16] id=123869 bin=ACD78 species=ACD78 genus=ACD78 taxon_order=ACD78 taxon_class=ACD78 phylum=BD1-5 tax=ACD78 organism_group=BD1-5 (Gracilibacteria) organism_desc=BD1-5 rbh
hypothetical protein
Tax=CG_GN02-02
ar4r2_scaffold_2004_16
Microscilla marina, Microscilla, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(13833..15455)
DNA (1623bp) protein (541aa)
Thiamine pyrophosphate enzyme n=1 Tax=Microscilla marina ATCC 23134 RepID=A1ZLG5_9BACT rbh
Thiamine pyrophosphate enzyme {ECO:0000313|EMBL:EAY28719.1}; TaxID=313606 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Microscilla.;" source="Microscilla marina ATCC 23134.;"
thiamine pyrophosphate-requiring enzyme rbh
ar4r2_scaffold_2004_17
Thalassospira profundimaris, Thalassospira, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(15622..15819)
DNA (198bp) protein (66aa)
Aspartate-semialdehyde dehydrogenase {ECO:0000256|HAMAP-Rule:MF_02121}; Short=ASA dehydrogenase {ECO:0000256|HAMAP-Rule:MF_02121};; Short=ASADH {ECO:0000256|HAMAP-Rule:MF_02121};; EC=1.2.1.11 {ECO:0000256|HAMAP-Rule:MF_02121};; Aspartate-beta-semialdehyde dehydrogenase {ECO:0000256|HAMAP-Rule:MF_02121}; TaxID=1177928 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Thalassospira.;" source="Thalassospira profundimaris WP0211.;"
Aspartate-semialdehyde dehydrogenase n=1 Tax=Thalassospira profundimaris WP0211 RepID=K2LL58_9PROT
aspartate-semialdehyde dehydrogenase
Displaying 17 items

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