ggKbase home page

AR1-0.1_scaffold_24

Search features with annotation key words

Displaying items 1-30 of 41 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
AR1-0.1_scaffold_24_1
unknown

Not on your lists

comp(3..143)
DNA (141bp) protein (47aa)

This feature has no annotations

AR1-0.1_scaffold_24_2
ACD78, Gracilibacteria, Bacteria

Not on your lists

632..1108
DNA (477bp) protein (159aa)
Uncharacterized protein n=1 Tax=uncultured bacterium (gcode 4) RepID=K1YB97_9BACT
crossover junction endodeoxyribonuclease RuvC
Tax=ACD78
AR1-0.1_scaffold_24_3

Not on your lists

comp(1128..2234)
DNA (1107bp) protein (369aa)
transmembrane_regions 7..29 id=68708 bin=ACD49 species=ACD49 genus=ACD49 taxon_order=ACD49 taxon_class=ACD49 phylum=BD1-5 tax=ACD49 organism_group=BD1-5 (Gracilibacteria) organism_desc=BD1-5
Uncharacterized protein {ECO:0000313|EMBL:EKD66155.1}; TaxID=1234023 species="Bacteria; environmental samples.;" source="uncultured bacterium (gcode 4).;"
AR1-0.1_scaffold_24_4
unknown

Not on your lists

comp(2244..2840)
DNA (597bp) protein (199aa)

This feature has no annotations

AR1-0.1_scaffold_24_5

Not on your lists

2922..3350
DNA (429bp) protein (143aa)
Uncharacterized protein n=1 Tax=uncultured bacterium (gcode 4) RepID=K2BUW2_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EKD66029.1}; TaxID=1234023 species="Bacteria; environmental samples.;" source="uncultured bacterium (gcode 4).;"
AR1-0.1_scaffold_24_6

Not on your lists

3360..4823
DNA (1464bp) protein (488aa)
Uncharacterized protein n=1 Tax=uncultured bacterium (gcode 4) RepID=K1XZL6_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EKD30411.1}; TaxID=1234023 species="Bacteria; environmental samples.;" source="uncultured bacterium (gcode 4).;"
putative General secretion pathway protein GspG
AR1-0.1_scaffold_24_7
CG_GN02-02, Gracilibacteria, Bacteria

Not on your lists

4844..5611
DNA (768bp) protein (256aa)
transmembrane_regions 7..29 id=123304 bin=ACD78 species=ACD78 genus=ACD78 taxon_order=ACD78 taxon_class=ACD78 phylum=BD1-5 tax=ACD78 organism_group=BD1-5 (Gracilibacteria) organism_desc=BD1-5
putative General secretion pathway protein GspG
Tax=CG_GN02-02
AR1-0.1_scaffold_24_8
R_OD1_Magasanikbacteria_33_17, Magasanikbacteria, Parcubacteria, Bacteria

Not on your lists

5647..8262
DNA (2616bp) protein (872aa)
Uncharacterized protein n=1 Tax=Thanatephorus cucumeris (strain AG1-IB / isolate 7/3/14) RepID=M5BRJ3_THACB
hypothetical protein
Tax=RIFCSPHIGHO2_02_FULL_OD1_Magasanikbacteria_33_17_curated
AR1-0.1_scaffold_24_9
CG_GN02-02, Gracilibacteria, Bacteria

Not on your lists


8336..8692
DNA (357bp) protein (119aa)
50S ribosomal protein L19 n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9YD27_9FIRM id=34528 bin=ACD2 species=Holdemania filiformis genus=Holdemania taxon_order=Erysipelotrichales taxon_class=Erysipelotrichia phylum=Firmicutes tax=ACD2 organism_group=BD1-5 (Gracilibacteria) organism_desc=BD1-5
rplS; 50S ribosomal protein L19
Tax=CG_GN02-02
AR1-0.1_scaffold_24_10

Not on your lists

8788..10242
DNA (1455bp) protein (485aa)
Glutamyl-tRNA(Gln) amidotransferase subunit A {ECO:0000256|HAMAP-Rule:MF_00120}; Short=Glu-ADT subunit A {ECO:0000256|HAMAP-Rule:MF_00120};; EC=6.3.5.7 {ECO:0000256|HAMAP-Rule:MF_00120};; TaxID=1234023 species="Bacteria; environmental samples.;" source="uncultured bacterium (gcode 4).;"
gatA; aspartyl/glutamyl-tRNA amidotransferase subunit A (EC:6.3.5.-) rbh
Glutamyl-tRNA(Gln) amidotransferase subunit A n=1 Tax=uncultured bacterium (gcode 4) RepID=K2AFH8_9BACT rbh
AR1-0.1_scaffold_24_11
CG_GN02-02, Gracilibacteria, Bacteria

Not on your lists

comp(10383..10949)
DNA (567bp) protein (189aa)
hypothetical protein id=124001 bin=ACD78 species=ACD78 genus=ACD78 taxon_order=ACD78 taxon_class=ACD78 phylum=BD1-5 tax=ACD78 organism_group=BD1-5 (Gracilibacteria) organism_desc=BD1-5
hypothetical protein
Tax=CG_GN02-02
AR1-0.1_scaffold_24_12
RIFOXYA2_FULL_Peregrinibacteria_33_7_curated, Peregrinibacteria, Bacteria

Not on your lists

comp(10963..11613)
DNA (651bp) protein (217aa)
trmD; tRNA (guanine-n(1)-)-methyltransferase (EC:2.1.1.31); K00554 tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228] id=5090925 bin=GWC2_PER_33_13 species=PER_GWC2_33_13 genus=PER_GWC2_33_13 taxon_order=PER_GWC2_33_13 taxon_class=PER_GWC2_33_13 phylum=PER tax=GWC2_PER_33_13 organism_group=PER (Peregrinibacteria) organism_desc=No RuBisCO in this genome
trmD; transfer RNA (guanine-N(1)-)-methyltransferase(M1G-methyltransferase) (tRNA [GM37] methyltransferase) (EC:2.1.1.31)
Tax=RIFOXYA2_FULL_Peregrinibacteria_33_7_curated
AR1-0.1_scaffold_24_13
R_Peregrinibacteria_39_12, Peregrinibacteria, Bacteria

Not on your lists

comp(11703..12287)
DNA (585bp) protein (195aa)
gmk; guanylate kinase (EC:2.7.4.8); K00942 guanylate kinase [EC:2.7.4.8] id=73194 bin=ACD51 species=PER_GWF2_42_17 genus=PER_GWF2_42_17 taxon_order=PER_GWF2_42_17 taxon_class=PER_GWF2_42_17 phylum=PER tax=ACD51 organism_group=PER (Peregrinibacteria) organism_desc=PER
gmk; guanylate kinase (EC:2.7.4.8)
Tax=RIFCSPLOWO2_01_FULL_Peregrinibacteria_39_12_curated
AR1-0.1_scaffold_24_14

Not on your lists

comp(12479..13444)
DNA (966bp) protein (322aa)
tryptophanyl-tRNA synthetase (EC:6.1.1.2)
Uncharacterized protein n=1 Tax=uncultured bacterium (gcode 4) RepID=K2GRW8_9BACT rbh
Uncharacterized protein {ECO:0000313|EMBL:EKE26055.1}; TaxID=1234023 species="Bacteria; environmental samples.;" source="uncultured bacterium (gcode 4).;"
AR1-0.1_scaffold_24_15

Not on your lists

comp(13645..14256)
DNA (612bp) protein (204aa)
probable transcriptional regulator n=1 Tax=candidate division TM7 single-cell isolate TM7c RepID=UPI00016B25B3 id=68748 bin=ACD49 species=candidate division TM7 single-cell isolate TM7c genus=unknown taxon_order=unknown taxon_class=unknown phylum=Candidatus Saccharibacteria tax=ACD49 organism_group=BD1-5 (Gracilibacteria) organism_desc=BD1-5
Putative transcriptional regulator {ECO:0000313|EMBL:EKD66216.1}; TaxID=1234023 species="Bacteria; environmental samples.;" source="uncultured bacterium (gcode 4).;"
hypothetical protein
AR1-0.1_scaffold_24_16

Not on your lists

comp(14709..18053)
DNA (3345bp) protein (1115aa)
DNA helicase {ECO:0000256|SAAS:SAAS00145970}; EC=3.6.4.12 {ECO:0000256|SAAS:SAAS00145970};; TaxID=1234023 species="Bacteria; environmental samples.;" source="uncultured bacterium (gcode 4).;"
DNA-dependent ATPase I and helicase II id=69409 bin=ACD49 species=ACD49 genus=ACD49 taxon_order=ACD49 taxon_class=ACD49 phylum=BD1-5 tax=ACD49 organism_group=BD1-5 (Gracilibacteria) organism_desc=BD1-5 rbh
DNA helicase UvrD
AR1-0.1_scaffold_24_17
GWC2_OD1_37_73, Moranbacteria, Parcubacteria, Bacteria

Not on your lists

comp(18311..19381)
DNA (1071bp) protein (357aa)
adenine-specific DNA-methyltransferase (EC:2.1.1.72) rbh
Site-specific DNA-methyltransferase (Adenine-specific) {ECO:0000313|EMBL:KKQ39637.1}; TaxID=1618697 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Moranbacteria) bacterium GW2011_GWC2_37_73.;"
Adenine-specific methyltransferase id=4213603 bin=GWC2_Planctomycetes_45_44 species=Brachyspira hampsonii genus=Brachyspira taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWC2_Planctomycetes_45_44 organism_group=Planctomycetes organism_desc=Novel; good rbh
AR1-0.1_scaffold_24_18
RIFOXYC2_FULL_WOR_2_45_15_curated, WOR-2, Bacteria

Not on your lists

comp(19606..20331)
DNA (726bp) protein (242aa)
Uncharacterized protein n=1 Tax=Helicobacter canis NCTC 12740 RepID=V8CHC7_9HELI
hypothetical protein
Tax=RIFOXYC2_FULL_WOR_2_45_15_curated
AR1-0.1_scaffold_24_19
RIFOXYD2_FULL_Sulfurimonas_37_8_curated, Campylobacterales, Epsilonproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20356..21075)
DNA (720bp) protein (240aa)
hypothetical protein n=1 Tax=Microgenomates bacterium SCGC AAA040-P11 RepID=UPI00036DACFA
hypothetical protein
Tax=RIFOXYD2_FULL_Sulfurimonas_37_8_curated
AR1-0.1_scaffold_24_20
GWC1_OD1_36_108, Parcubacteria, Bacteria

Not on your lists

comp(21068..21394)
DNA (327bp) protein (109aa)
DNA modification methylase n=1 Tax=Riemerella anatipestifer RA-CH-1 RepID=J9QYY6_RIEAN
Methylase N-4/N-6 domain protein {ECO:0000313|EMBL:KKP89677.1}; TaxID=1618894 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWC1_36_108.;"
DNA modification methylase
AR1-0.1_scaffold_24_21
Natranaerobius thermophilus, Natranaerobius, Natranaerobiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21630..24128)
DNA (2499bp) protein (833aa)
phenylalanyl-tRNA synthetase subunit beta (EC:6.1.1.20) rbh
Phenylalanine--tRNA ligase beta subunit {ECO:0000256|HAMAP-Rule:MF_00283, ECO:0000256|SAAS:SAAS00103829}; EC=6.1.1.20 {ECO:0000256|HAMAP-Rule:MF_00283, ECO:0000256|SAAS:SAAS00022425};; Phenylalanyl-tRNA synthetase beta subunit {ECO:0000256|HAMAP-Rule:MF_00283}; TaxID=457570 species="Bacteria; Firmicutes; Clostridia; Natranaerobiales; Natranaerobiaceae; Natranaerobius.;" source="Natranaerobius thermophilus (strain ATCC BAA-1301 / DSM 18059 /; JW/NM-WN-LF).;"
hypothetical protein n=1 Tax=Parcubacteria bacterium SCGC AAA011-J21 RepID=UPI000371D425
AR1-0.1_scaffold_24_22
R_Peregrinibacteria_48_14, Peregrinibacteria, Bacteria

Not on your lists

comp(24262..25599)
DNA (1338bp) protein (446aa)
Tax=RIFCSPLOWO2_02_FULL_Peregrinibacteria_48_14_curated
AR1-0.1_scaffold_24_23

Not on your lists


comp(25562..25777)
DNA (216bp) protein (72aa)
50S ribosomal protein L31 n=1 Tax=uncultured bacterium (gcode 4) RepID=K2G5A9_9BACT
50S ribosomal protein L31 {ECO:0000256|HAMAP-Rule:MF_00501, ECO:0000256|SAAS:SAAS00004482}; TaxID=1234023 species="Bacteria; environmental samples.;" source="uncultured bacterium (gcode 4).;"
rpmE; large subunit ribosomal protein L31
AR1-0.1_scaffold_24_trna_3
unknown

Not on your lists

comp(25836..25917)
DNA (82bp)
transferRNA Leu
AR1-0.1_scaffold_24_trna_2
unknown

Not on your lists

comp(26019..26100)
DNA (82bp)
transferRNA Tyr
AR1-0.1_scaffold_24_trna_1
unknown

Not on your lists

comp(26200..26272)
DNA (73bp)
transferRNA Thr
AR1-0.1_scaffold_24_24

Not on your lists

26396..27289
DNA (894bp) protein (298aa)
tRNA dimethylallyltransferase {ECO:0000256|HAMAP-Rule:MF_00185, ECO:0000256|RuleBase:RU003783}; EC=2.5.1.75 {ECO:0000256|HAMAP-Rule:MF_00185, ECO:0000256|RuleBase:RU003783};; Dimethylallyl diphosphate:tRNA dimethylallyltransferase {ECO:0000256|HAMAP-Rule:MF_00185}; Isopentenyl-diphosphate:tRNA isopentenyltransferase {ECO:0000256|HAMAP-Rule:MF_00185}; TaxID=1234023 species="Bacteria; environmental samples.;" source="uncultured bacterium (gcode 4).;"
miaA; tRNA delta(2)-isopentenylpyrophosphate transferase (EC:2.5.1.75)
tRNA dimethylallyltransferase n=1 Tax=Peptostreptococcus anaerobius 653-L RepID=D3MUH3_9FIRM id=123565 bin=ACD78 species=Peptostreptococcus anaerobius genus=Peptostreptococcus taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=ACD78 organism_group=BD1-5 (Gracilibacteria) organism_desc=BD1-5 rbh
AR1-0.1_scaffold_24_25
ACD78, Gracilibacteria, Bacteria

Not on your lists

comp(27413..28291)
DNA (879bp) protein (293aa)
transmembrane_regions 12..31 id=124578 bin=ACD78 species=ACD78 genus=ACD78 taxon_order=ACD78 taxon_class=ACD78 phylum=BD1-5 tax=ACD78 organism_group=BD1-5 (Gracilibacteria) organism_desc=BD1-5
Tax=ACD78
AR1-0.1_scaffold_24_26

Not on your lists

comp(28313..29545)
DNA (1233bp) protein (411aa)
seg 21..37 id=124579 bin=ACD78 species=ACD78 genus=ACD78 taxon_order=ACD78 taxon_class=ACD78 phylum=BD1-5 tax=ACD78 organism_group=BD1-5 (Gracilibacteria) organism_desc=BD1-5 rbh
Uncharacterized protein {ECO:0000313|EMBL:EKD30301.1}; TaxID=1234023 species="Bacteria; environmental samples.;" source="uncultured bacterium (gcode 4).;"
AR1-0.1_scaffold_24_27

Not on your lists

comp(29608..29859)
DNA (252bp) protein (84aa)
seg 3..25 id=69294 bin=ACD49 species=ACD49 genus=ACD49 taxon_order=ACD49 taxon_class=ACD49 phylum=BD1-5 tax=ACD49 organism_group=BD1-5 (Gracilibacteria) organism_desc=BD1-5
Uncharacterized protein {ECO:0000313|EMBL:EKD65787.1}; TaxID=1234023 species="Bacteria; environmental samples.;" source="uncultured bacterium (gcode 4).;"
Displaying items 1-30 of 41 in total

View Taxonomy