ggKbase home page
Advanced Search
Search Help

BJP_Ig2157_Hor_140_2014_Thermoplasmata_53_6

07V140M03_2014_Euryarchaeota_52_6
In projects: 07V140M03_2014  |  diaphorachaeota  |  archaea_ggkbase  |  horonobe_genomes

Consensus taxonomy: Euryarchaeota  →  Archaea

Metagenomic Context

Parent: BJP_IG2157_UNK

Properties

Avg. coverage: 6.27 Longest contig: 13.27 Kbp Bin length: 776.56 Kbp GC content: 52.38 %
Contigs count: 246 Features count: 885 rRNAs count: 0 tRNAs count: 11

Genome completeness

partial RP 25 / 55 BSCG 9 / 51 ASCG 28 / 38 MC: 3

Description

Fragmented. May not be clean -->curated, please check (YA) Thermoplasmata archaeon HGW-Thermoplasmata-2 (possibly novel; 61.1% of identity based on NCBI blast search) old name; BJP_IG2157_Euryarchaeota_53_6

Displaying items 51-100 of 246 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
bjp_ig2157_scaffold_18722
Species: Thermoplasmatales archaeon SCGC AB-539-N05 (100%)
1 1448 bp 51.73 5.08 99.86
bjp_ig2157_scaffold_12204
Species: Thermoplasmatales archaeon SCGC AB-539-N05 (100%)
1 2020 bp 55.05 5.12 99.95
bjp_ig2157_scaffold_25832
Species: Thermoplasmatales archaeon SCGC AB-539-N05 (50%)
2 1114 bp 52.69 5.12 84.56
bjp_ig2157_scaffold_9540
Species: BJP_IG2158_Thermoplasmatales_53_16 (50%)
4 2416 bp 52.90 5.15 91.76
bjp_ig2157_scaffold_7567
Phylum: Euryarchaeota (50%)
4 2868 bp 49.27 5.18 93.72
bjp_ig2157_scaffold_4025
Species: RBG_13_Euryarchaeota_31_8_curated (50%)
4 4371 bp 54.59 5.18 99.04
bjp_ig2157_scaffold_11043
Phylum: Euryarchaeota (66.67%)
3 2169 bp 53.71 5.19 92.53
bjp_ig2157_scaffold_9628
Species: Thermoplasmatales archaeon SCGC AB-540-F20 (50%)
2 2400 bp 50.50 5.19 72.63
bjp_ig2157_scaffold_21499
Species: BJP_IG2158_Thermoplasmatales_53_16 (100%)
1 1298 bp 51.54 5.20 86.90
bjp_ig2157_scaffold_25505
Species: Methanocella arvoryzae (100%)
1 1126 bp 45.83 5.20 79.13
bjp_ig2157_scaffold_7312
Species: BJP_IG2158_Thermoplasmatales_53_16 (100%)
1 2934 bp 51.60 5.21 99.18
bjp_ig2157_scaffold_24974
Species: Geoglobus acetivorans (100%)
1 1145 bp 49.34 5.24 85.15
bjp_ig2157_scaffold_7934
Phylum: Euryarchaeota (66.67%)
3 2767 bp 53.16 5.26 93.57
bjp_ig2157_scaffold_23070
Species: BJP_IG2158_Thermoplasmatales_53_16 (50%)
2 1225 bp 54.78 5.27 98.45
bjp_ig2157_scaffold_15640
Phylum: Euryarchaeota (75%)
4 1669 bp 52.55 5.30 83.22
bjp_ig2157_scaffold_14077
Species: BJP_IG2158_Thermoplasmatales_53_16 (50%)
2 1813 bp 48.65 5.30 88.69
bjp_ig2157_scaffold_7216
Phylum: Euryarchaeota (71.43%)
7 2963 bp 49.00 5.32 92.14
bjp_ig2157_scaffold_1685 9 7895 bp 53.50 5.32 93.70
bjp_ig2157_scaffold_6520
Species: BJP_IG2158_Thermoplasmatales_53_16 (50%)
4 3180 bp 54.12 5.33 96.04
bjp_ig2157_scaffold_15450
Species: BJP_IG2157_Anaerolineales_55_23 (50%)
2 1686 bp 54.57 5.34 98.58
bjp_ig2157_scaffold_27520
Species: RBG_16_Euryarchaeota_68_13_curated (50%)
2 1055 bp 54.88 5.40 95.26
bjp_ig2157_scaffold_16773
Species: Methanobacterium paludis (50%)
2 1580 bp 50.25 5.41 100.25
bjp_ig2157_scaffold_10879
Species: Archaeoglobus veneficus (50%)
2 2192 bp 50.27 5.41 70.76
bjp_ig2157_scaffold_17206
Order: Thermoplasmatales (50%)
4 1549 bp 50.03 5.42 70.88
bjp_ig2157_scaffold_13130
Phylum: Euryarchaeota (75%)
4 1908 bp 53.14 5.42 86.16
bjp_ig2157_scaffold_10917
Species: Thermoplasmatales archaeon SCGC AB-539-N05 (100%)
2 2188 bp 54.66 5.42 78.43
bjp_ig2157_scaffold_10960
Phylum: Euryarchaeota (100%)
3 2180 bp 55.50 5.44 88.21
bjp_ig2157_scaffold_7668
Phylum: Euryarchaeota (50%)
4 2836 bp 46.30 5.45 77.22
bjp_ig2157_scaffold_3478
Phylum: Euryarchaeota (50%)
4 4840 bp 51.40 5.45 94.59
bjp_ig2157_scaffold_9839
Order: Methanosarcinales (50%)
4 2363 bp 52.56 5.46 93.31
bjp_ig2157_scaffold_8363
Species: RBG_13_Euryarchaeota_31_8_curated (66.67%)
3 2662 bp 53.01 5.47 94.55
bjp_ig2157_scaffold_3395
Phylum: Euryarchaeota (75%)
4 4920 bp 52.66 5.52 91.40
bjp_ig2157_scaffold_29125
Species: BJP_IG2158_Thermoplasmatales_53_16 (50%)
2 1004 bp 51.89 5.53 74.70
bjp_ig2157_scaffold_7158
Species: Thermoplasmatales archaeon SCGC AB-539-N05 (50%)
2 2977 bp 49.75 5.54 91.70
bjp_ig2157_scaffold_8072
Phylum: Euryarchaeota (75%)
4 2735 bp 53.42 5.54 93.67
bjp_ig2157_scaffold_15135
Species: BJP_IG2158_Thermoplasmatales_53_16 (50%)
2 1714 bp 54.26 5.60 90.67
bjp_ig2157_scaffold_2227 8 6510 bp 50.74 5.60 97.60
bjp_ig2157_scaffold_6767
Domain: Archaea (66.67%)
3 3101 bp 53.05 5.61 83.30
bjp_ig2157_scaffold_18552
Species: archaeon GW2011_AR19 (50%)
2 1459 bp 54.15 5.65 89.86
bjp_ig2157_scaffold_4818
Class: Thermoplasmata (60%)
5 3899 bp 53.37 5.66 83.56
bjp_ig2157_scaffold_15989
Species: BJP_IG2158_Thermoplasmatales_53_16 (100%)
2 1640 bp 52.07 5.67 99.51
bjp_ig2157_scaffold_7411
Order: Thermoplasmatales (66.67%)
3 2906 bp 53.23 5.68 85.27
bjp_ig2157_scaffold_8367
Phylum: Euryarchaeota (80%)
5 2662 bp 53.38 5.69 89.48
bjp_ig2157_scaffold_3767
Species: BJP_IG2158_Thermoplasmatales_53_16 (50%)
4 4582 bp 54.58 5.70 96.64
bjp_ig2157_scaffold_13266
Species: Aciduliprofundum boonei (50%)
2 1894 bp 46.36 5.70 83.47
bjp_ig2157_scaffold_21184
Species: BJP_IG2158_Thermoplasmatales_53_16 (100%)
1 1313 bp 58.57 5.71 99.85
bjp_ig2157_scaffold_23246
Species: Thermoplasmatales archaeon SCGC AB-540-F20 (50%)
2 1217 bp 51.27 5.79 88.99
bjp_ig2157_scaffold_5204
Phylum: Euryarchaeota (80%)
5 3699 bp 53.04 5.80 98.95
bjp_ig2157_scaffold_26705
Species: RBG_16_Euryarchaeota_62_10_curated (100%)
1 1083 bp 48.29 5.82 41.55
bjp_ig2157_scaffold_29183
Species: RBG_13_Euryarchaeota_31_8_curated (50%)
2 1003 bp 53.64 5.83 99.60
Displaying items 51-100 of 246 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.