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BJP_Ig2157_Hor_140_2014_Thermoplasmata_53_6

07V140M03_2014_Euryarchaeota_52_6
In projects: 07V140M03_2014  |  diaphorachaeota  |  archaea_ggkbase  |  horonobe_genomes

Consensus taxonomy: Euryarchaeota  →  Archaea

Description

Fragmented. May not be clean -->curated, please check (YA) Thermoplasmata archaeon HGW-Thermoplasmata-2 (possibly novel; 61.1% of identity based on NCBI blast search) old name; BJP_IG2157_Euryarchaeota_53_6

Displaying items 151-200 of 246 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
bjp_ig2157_scaffold_17372
Species: BJP_IG2158_Thermoplasmatales_53_16 (100%)
1 1537 bp 56.02 6.34 89.79
bjp_ig2157_scaffold_17424
Species: BJP_IG2158_Thermoplasmatales_53_16 (100%)
1 1534 bp 55.54 6.36 97.20
bjp_ig2157_scaffold_6151
Phylum: Euryarchaeota (50%)
4 3298 bp 54.37 6.37 81.96
bjp_ig2157_scaffold_1174
Phylum: Euryarchaeota (53.85%)
13 10408 bp 48.97 6.37 88.49
bjp_ig2157_scaffold_2514 7 5989 bp 50.99 6.41 85.91
bjp_ig2157_scaffold_3468
Species: BJP_IG2158_Thermoplasmatales_53_16 (75%)
4 4845 bp 50.73 6.44 84.95
bjp_ig2157_scaffold_11466
Species: BJP_IG2158_Thermoplasmatales_53_16 (100%)
1 2115 bp 53.48 6.45 100.00
bjp_ig2157_scaffold_24572
Species: BJP_IG2158_Thermoplasmatales_53_16 (100%)
1 1161 bp 55.04 6.46 99.74
bjp_ig2157_scaffold_2218
Species: BJP_IG2158_Thermoplasmatales_53_16 (66.67%)
6 6520 bp 52.32 6.46 93.82
bjp_ig2157_scaffold_14339
Phylum: Euryarchaeota (66.67%)
3 1787 bp 54.73 6.46 95.69
bjp_ig2157_scaffold_5324
Species: uncultured archaeon (60%)
5 3639 bp 56.36 6.47 93.24
bjp_ig2157_scaffold_890
Phylum: Euryarchaeota (76.92%)
13 13267 bp 51.81 6.48 85.63
bjp_ig2157_scaffold_6320
Phylum: Euryarchaeota (80%)
5 3242 bp 51.48 6.48 90.13
bjp_ig2157_scaffold_16418
Species: Natrinema gari (50%)
2 1606 bp 52.30 6.54 101.99
bjp_ig2157_scaffold_1781
Phylum: Euryarchaeota (57.14%)
7 7648 bp 53.02 6.55 96.81
bjp_ig2157_scaffold_1821
Phylum: Euryarchaeota (63.64%)
11 7502 bp 52.01 6.56 93.62
bjp_ig2157_scaffold_13462
Phylum: Euryarchaeota (66.67%)
3 1869 bp 53.99 6.58 97.91
bjp_ig2157_scaffold_3837
Phylum: Euryarchaeota (66.67%)
6 4516 bp 51.68 6.58 91.87
bjp_ig2157_scaffold_25187
Species: BJP_IG2158_Thermoplasmatales_53_16 (50%)
2 1137 bp 53.74 6.60 68.07
bjp_ig2157_scaffold_1624
Phylum: Euryarchaeota (50%)
6 8085 bp 53.12 6.62 93.28
bjp_ig2157_scaffold_4358
Domain: Archaea (100%)
3 4149 bp 52.78 6.65 81.42
bjp_ig2157_scaffold_6887
Species: BJP_IG2158_Thermoplasmatales_53_16 (50%)
4 3061 bp 53.25 6.66 87.81
bjp_ig2157_scaffold_12297
Species: Candidatus Methanoplasma termitum (50%)
2 2006 bp 53.24 6.66 86.89
bjp_ig2157_scaffold_8782
Domain: Archaea (66.67%)
3 2566 bp 53.20 6.66 95.64
bjp_ig2157_scaffold_7812
Class: Thermoplasmata (66.67%)
3 2801 bp 52.66 6.69 91.68
bjp_ig2157_scaffold_10018
Phylum: Euryarchaeota (66.67%)
3 2329 bp 53.80 6.70 81.49
bjp_ig2157_scaffold_3450
Species: BJP_IG2158_Thermoplasmatales_53_16 (60%)
5 4859 bp 52.38 6.70 82.55
bjp_ig2157_scaffold_4905
Phylum: Euryarchaeota (66.67%)
6 3852 bp 52.26 6.70 95.02
bjp_ig2157_scaffold_2315
Phylum: Euryarchaeota (50%)
6 6354 bp 49.75 6.70 89.61
bjp_ig2157_scaffold_8646
Phylum: Euryarchaeota (50%)
4 2595 bp 52.29 6.71 90.52
bjp_ig2157_scaffold_5785
Species: RBG_13_Euryarchaeota_31_8_curated (50%)
4 3447 bp 53.64 6.74 93.04
bjp_ig2157_scaffold_27177
Species: Salinarchaeum sp. Harcht-Bsk1 (100%)
1 1067 bp 50.05 6.75 76.48
bjp_ig2157_scaffold_13162
Species: RBG_16_Euryarchaeota_68_12_curated (50%)
2 1905 bp 52.28 6.77 82.20
bjp_ig2157_scaffold_13835
Species: Thermoplasmatales archaeon SCGC AB-540-F20 (50%)
2 1835 bp 51.06 6.78 75.53
bjp_ig2157_scaffold_10622
Species: Methanocella conradii (50%)
2 2228 bp 53.99 6.80 100.05
bjp_ig2157_scaffold_10239
Phylum: Euryarchaeota (66.67%)
3 2291 bp 53.51 6.81 94.02
bjp_ig2157_scaffold_3786
Phylum: Euryarchaeota (50%)
6 4569 bp 54.48 6.83 88.64
bjp_ig2157_scaffold_1838
Domain: Archaea (66.67%)
9 7427 bp 51.53 6.83 89.31
bjp_ig2157_scaffold_4463
Phylum: Euryarchaeota (75%)
4 4102 bp 53.61 6.84 94.27
bjp_ig2157_scaffold_19872
Species: Thermoplasmatales archaeon SCGC AB-539-N05 (50%)
2 1382 bp 53.40 6.84 94.21
bjp_ig2157_scaffold_2077
Phylum: Euryarchaeota (71.43%)
7 6800 bp 53.75 6.84 96.88
bjp_ig2157_scaffold_3560
Phylum: Euryarchaeota (75%)
4 4773 bp 52.15 6.85 97.05
bjp_ig2157_scaffold_29079
Species: RBG_13_Euryarchaeota_61_15_curated (100%)
1 1006 bp 51.89 6.86 79.92
bjp_ig2157_scaffold_2040
Domain: Bacteria (75%)
8 6889 bp 53.94 6.86 91.01
bjp_ig2157_scaffold_2380
Species: BJP_IG2158_Thermoplasmatales_53_16 (50%)
4 6201 bp 51.23 6.92 90.57
bjp_ig2157_scaffold_1256
Phylum: Euryarchaeota (60%)
10 9884 bp 51.19 6.97 87.93
bjp_ig2157_scaffold_15588
Species: Halococcus salifodinae (50%)
2 1675 bp 54.27 6.99 89.55
bjp_ig2157_scaffold_22195
Species: BJP_IG2158_Thermoplasmatales_53_16 (50%)
2 1265 bp 48.93 7.00 59.76
bjp_ig2157_scaffold_12793
Species: BJP_IG2158_Thermoplasmatales_53_16 (100%)
1 1945 bp 50.85 7.02 73.26
bjp_ig2157_scaffold_11376
Species: BJP_IG2158_Thermoplasmatales_53_16 (60%)
5 2126 bp 53.25 7.06 98.21
Displaying items 151-200 of 246 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.