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bjp_ig2157_scaffold_487

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Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
bjp_ig2157_scaffold_487_1
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

173..1030
DNA (858bp) protein (286aa)
extracellular solute-binding protein; K10022 arginine/ornithine transport system substrate-binding protein id=5081058 bin=GWF1_Burkholderiales_GWF1_66_17 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
extracellular solute-binding protein; K10022 arginine/ornithine transport system substrate-binding protein Tax=GWE1_Burkholderiales_65_30_curated
extracellular solute-binding protein
bjp_ig2157_scaffold_487_2
Hydrogenophaga sp. T4, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1058..1759
DNA (702bp) protein (234aa)
Histidine transport system permease protein HisQ {ECO:0000313|EMBL:EWS64931.1}; TaxID=1437444 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;"
polar amino acid ABC transporter permease; K10024 arginine/ornithine transport system permease protein id=5081057 bin=GWF1_Burkholderiales_GWF1_66_17 species=Alicycliphilus denitrificans genus=Alicycliphilus taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
polar amino acid ABC transporter inner membrane subunit
bjp_ig2157_scaffold_487_3
Hydrogenophaga sp. T4, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1759..2475
DNA (717bp) protein (239aa)
amino acid ABC transporter permease; K10023 arginine/ornithine transport system permease protein id=5081056 bin=GWF1_Burkholderiales_GWF1_66_17 species=Curvibacter putative symbiont of Hydra magnipapillata genus=Curvibacter taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
Histidine transport system permease protein HisM {ECO:0000313|EMBL:EWS64930.1}; TaxID=1437444 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;"
amino acid ABC transporter permease
bjp_ig2157_scaffold_487_4
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2571..3692
DNA (1122bp) protein (374aa)
succinylglutamate desuccinylase/aspartoacylase; K06987 id=5081055 bin=GWF1_Burkholderiales_GWF1_66_17 species=Albidiferax ferrireducens genus=Albidiferax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
succinylglutamate desuccinylase/aspartoacylase; K06987 Tax=GWE1_Burkholderiales_65_30_curated
succinylglutamate desuccinylase/aspartoacylase
bjp_ig2157_scaffold_487_5
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3709..4476
DNA (768bp) protein (256aa)
sulfate-transporting ATPase (EC:3.6.3.25); K10025 arginine/ornithine transport system ATP-binding protein [EC:3.6.3.-] Tax=GWE1_Burkholderiales_65_30_curated
sulfate-transporting ATPase (EC:3.6.3.25)
ABC transporter related protein id=1265400 bin=GWE1_Burkholderiales_65_30 species=Alicycliphilus denitrificans genus=Alicycliphilus taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria rbh
bjp_ig2157_scaffold_487_6
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4610..5374
DNA (765bp) protein (255aa)
EF-Hand, calmodulin id=5081053 bin=GWF1_Burkholderiales_GWF1_66_17 species=Acidovorax avenae genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
EF-Hand, calmodulin Tax=GWE1_Burkholderiales_65_30_curated
EF-Hand, calmodulin
bjp_ig2157_scaffold_487_7
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5554..8037)
DNA (2484bp) protein (828aa)
penicillin amidase (EC:3.5.1.11); K01434 penicillin amidase [EC:3.5.1.11] id=5081052 bin=GWF1_Burkholderiales_GWF1_66_17 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
penicillin amidase (EC:3.5.1.11); K01434 penicillin amidase [EC:3.5.1.11] Tax=GWE1_Burkholderiales_65_30_curated
penicillin amidase (EC:3.5.1.11)
bjp_ig2157_scaffold_487_8
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8115..9059)
DNA (945bp) protein (315aa)
putative adenylate/guanylate cyclase id=5081051 bin=GWF1_Burkholderiales_GWF1_66_17 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
putative adenylate/guanylate cyclase Tax=GWE1_Burkholderiales_65_30_curated
putative adenylate/guanylate cyclase
bjp_ig2157_scaffold_487_9
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9448..9780
DNA (333bp) protein (111aa)
hypothetical protein id=5081050 bin=GWF1_Burkholderiales_GWF1_66_17 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD
hypothetical protein Tax=GWE1_Burkholderiales_65_30_curated
hypothetical protein
bjp_ig2157_scaffold_487_10
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9809..10750)
DNA (942bp) protein (314aa)
muramoyltetrapeptide carboxypeptidase (EC:3.4.17.13); K01297 muramoyltetrapeptide carboxypeptidase [EC:3.4.17.13] id=5081049 bin=GWF1_Burkholderiales_GWF1_66_17 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
muramoyltetrapeptide carboxypeptidase (EC:3.4.17.13); K01297 muramoyltetrapeptide carboxypeptidase [EC:3.4.17.13] Tax=GWE1_Burkholderiales_65_30_curated
muramoyltetrapeptide carboxypeptidase (EC:3.4.17.13)
bjp_ig2157_scaffold_487_11
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10782..12137)
DNA (1356bp) protein (452aa)
bifunctional haloalkane dehalogenase/tRNA-specific adenosine deaminase id=5081048 bin=GWF1_Burkholderiales_GWF1_66_17 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
bifunctional haloalkane dehalogenase/tRNA-specific adenosine deaminase Tax=GWE1_Burkholderiales_65_30_curated
bifunctional haloalkane dehalogenase/tRNA-specific adenosine deaminase
bjp_ig2157_scaffold_487_12
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12235..13377
DNA (1143bp) protein (381aa)
hypothetical protein id=5081047 bin=GWF1_Burkholderiales_GWF1_66_17 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
hypothetical protein Tax=GWE1_Burkholderiales_65_30_curated
hypothetical protein
bjp_ig2157_scaffold_487_13
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13357..14037)
DNA (681bp) protein (227aa)
hypothetical protein id=5081046 bin=GWF1_Burkholderiales_GWF1_66_17 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
hypothetical protein Tax=GWE1_Burkholderiales_65_30_curated
hypothetical protein
bjp_ig2157_scaffold_487_14
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14034..14582)
DNA (549bp) protein (183aa)
2'-5' RNA ligase; K01975 2'-5' RNA ligase [EC:6.5.1.-] id=5081045 bin=GWF1_Burkholderiales_GWF1_66_17 species=Methylibium petroleiphilum genus=Methylibium taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
2'-5' RNA ligase; K01975 2'-5' RNA ligase [EC:6.5.1.-] Tax=GWE1_Burkholderiales_65_30_curated
2'-5' RNA ligase
bjp_ig2157_scaffold_487_15
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14733..14993)
DNA (261bp) protein (87aa)
hypothetical protein id=1265410 bin=GWE1_Burkholderiales_65_30 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria
hypothetical protein Tax=GWE1_Burkholderiales_65_30_curated
bjp_ig2157_scaffold_487_16
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15414..16112)
DNA (699bp) protein (233aa)
sdhB; succinate dehydrogenase iron-sulfur subunit SdhB (EC:1.3.99.1); K00240 succinate dehydrogenase iron-sulfur subunit [EC:1.3.99.1] id=5081044 bin=GWF1_Burkholderiales_GWF1_66_17 species=unknown genus=Rubrivivax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
sdhB; succinate dehydrogenase iron-sulfur subunit SdhB (EC:1.3.99.1); K00240 succinate dehydrogenase iron-sulfur subunit [EC:1.3.99.1] Tax=GWE1_Burkholderiales_65_30_curated
sdhB; succinate dehydrogenase iron-sulfur subunit SdhB (EC:1.3.99.1)
bjp_ig2157_scaffold_487_17
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16206..17147)
DNA (942bp) protein (314aa)
carbamate kinase (EC:2.7.2.2); K00926 carbamate kinase [EC:2.7.2.2] Tax=GWE1_Burkholderiales_65_30_curated
carbamate kinase (EC:2.7.2.2)
Carbamate kinase id=1265412 bin=GWE1_Burkholderiales_65_30 species=Desulfomicrobium baculatum genus=Desulfomicrobium taxon_order=Desulfovibrionales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria rbh
bjp_ig2157_scaffold_487_18
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17167..18165)
DNA (999bp) protein (333aa)
ornithine carbamoyltransferase; K00611 ornithine carbamoyltransferase [EC:2.1.3.3] Tax=GWE1_Burkholderiales_65_30_curated
Ornithine carbamoyltransferase id=1265413 bin=GWE1_Burkholderiales_65_30 species=Polaromonas sp. CF318 genus=Polaromonas taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria rbh
ornithine carbamoyltransferase
bjp_ig2157_scaffold_487_19
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18193..19410)
DNA (1218bp) protein (406aa)
arginine deiminase (EC:3.5.3.6); K01478 arginine deiminase [EC:3.5.3.6] id=5081041 bin=GWF1_Burkholderiales_GWF1_66_17 species=Desulfomicrobium baculatum genus=Desulfomicrobium taxon_order=Desulfovibrionales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
arginine deiminase (EC:3.5.3.6); K01478 arginine deiminase [EC:3.5.3.6] Tax=GWE1_Burkholderiales_65_30_curated
arginine deiminase (EC:3.5.3.6) rbh
bjp_ig2157_scaffold_487_20
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19448..20896)
DNA (1449bp) protein (483aa)
arginine/ornithine antiporter; K03758 arginine:ornithine antiporter id=5081040 bin=GWF1_Burkholderiales_GWF1_66_17 species=Polaromonas sp. CF318 genus=Polaromonas taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
arginine/ornithine antiporter; K03758 arginine:ornithine antiporter Tax=GWE1_Burkholderiales_65_30_curated
arginine/ornithine antiporter
bjp_ig2157_scaffold_487_21
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20893..21150)
DNA (258bp) protein (86aa)
id=5081039 bin=GWF1_Burkholderiales_GWF1_66_17 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD
id=5081039 Tax=GWE1_Burkholderiales_65_30_curated
bjp_ig2157_scaffold_487_22
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21230..22144)
DNA (915bp) protein (305aa)
alternate F1F0 ATPase F1 subunit gamma; K02115 F-type H+-transporting ATPase subunit gamma [EC:3.6.3.14] id=5081038 bin=GWF1_Burkholderiales_GWF1_66_17 species=unknown genus=Pseudomonas taxon_order=Pseudomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
alternate F1F0 ATPase F1 subunit gamma; K02115 F-type H+-transporting ATPase subunit gamma [EC:3.6.3.14] Tax=GWE1_Burkholderiales_65_30_curated
alternate F1F0 ATPase F1 subunit gamma
bjp_ig2157_scaffold_487_23
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22144..22512)
DNA (369bp) protein (123aa)
ribosomal subunit interface protein, putative id=5081037 bin=GWF1_Burkholderiales_GWF1_66_17 species=gamma proteobacterium IMCC1989 genus=unknown taxon_order=Alteromonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD
ribosomal subunit interface protein, putative Tax=GWE1_Burkholderiales_65_30_curated
ribosomal subunit interface protein, putative
bjp_ig2157_scaffold_487_24
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22542..23789)
DNA (1248bp) protein (416aa)
F0F1 ATP synthase subunit alpha (EC:3.6.3.14); K02111 F-type H+-transporting ATPase subunit alpha [EC:3.6.3.14] id=5081036 bin=GWF1_Burkholderiales_GWF1_66_17 species=Pseudomonas veronii genus=Pseudomonas taxon_order=Pseudomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
F0F1 ATP synthase subunit alpha (EC:3.6.3.14); K02111 F-type H+-transporting ATPase subunit alpha [EC:3.6.3.14] Tax=GWE1_Burkholderiales_65_30_curated
ATP synthase subunit alpha
Displaying 24 items

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