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bjp_ig2157_scaffold_598

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Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
bjp_ig2157_scaffold_598_1
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1..1314
DNA (1314bp) protein (438aa)
hypothetical protein id=5080345 bin=GWF1_Burkholderiales_GWF1_66_17 species=Acidovorax sp. CF316 genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
hypothetical protein Tax=GWE1_Burkholderiales_65_30_curated
hypothetical protein
bjp_ig2157_scaffold_598_2
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1414..2523)
DNA (1110bp) protein (370aa)
Phenylacetate-CoA oxygenase/reductase, PaaK subunit id=1270014 bin=GWE1_Burkholderiales_65_30 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria rbh
ferredoxin:oxidoreductase FAD/NAD(P)-binding:oxidoreductase FAD-binding region; K02613 ring-1,2-phenylacetyl-CoA epoxidase subunit PaaE Tax=GWE1_Burkholderiales_65_30_curated
ferredoxin:oxidoreductase FAD/NAD(P)-binding:oxidoreductase FAD-binding region
bjp_ig2157_scaffold_598_3
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2528..3052)
DNA (525bp) protein (175aa)
phenylacetate-CoA oxygenase, PaaJ subunit; K02612 ring-1,2-phenylacetyl-CoA epoxidase subunit PaaD id=5080343 bin=GWF1_Burkholderiales_GWF1_66_17 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
phenylacetate-CoA oxygenase, PaaJ subunit; K02612 ring-1,2-phenylacetyl-CoA epoxidase subunit PaaD Tax=GWE1_Burkholderiales_65_30_curated
phenylacetate-CoA oxygenase, PaaJ subunit
bjp_ig2157_scaffold_598_4
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3058..3900)
DNA (843bp) protein (281aa)
phenylacetate-CoA oxygenase subunit PaaI; K02611 ring-1,2-phenylacetyl-CoA epoxidase subunit PaaC [EC:1.14.13.149] id=5080342 bin=GWF1_Burkholderiales_GWF1_66_17 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
phenylacetate-CoA oxygenase subunit PaaI; K02611 ring-1,2-phenylacetyl-CoA epoxidase subunit PaaC [EC:1.14.13.149] Tax=GWE1_Burkholderiales_65_30_curated
phenylacetate-CoA oxygenase subunit PaaI
bjp_ig2157_scaffold_598_5
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3900..4208)
DNA (309bp) protein (103aa)
Phenylacetate-CoA oxygenase subunit PaaB id=1270017 bin=GWE1_Burkholderiales_65_30 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria
paaB; phenylacetate-CoA oxygenase subunit PaaB; K02610 ring-1,2-phenylacetyl-CoA epoxidase subunit PaaB Tax=GWE1_Burkholderiales_65_30_curated
uncharacterized enzyme of phenylacetate metabolism
bjp_ig2157_scaffold_598_6
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4205..5227)
DNA (1023bp) protein (341aa)
paaA; phenylacetate-CoA oxygenase subunit PaaA; K02609 ring-1,2-phenylacetyl-CoA epoxidase subunit PaaA [EC:1.14.13.149] Tax=GWE1_Burkholderiales_65_30_curated
Phenylacetate-CoA oxygenase, PaaG subunit id=1270018 bin=GWE1_Burkholderiales_65_30 species=Dechloromonas aromatica genus=Dechloromonas taxon_order=Rhodocyclales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria rbh
paaA; phenylacetate-CoA oxygenase subunit PaaA
bjp_ig2157_scaffold_598_7
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5386..6012
DNA (627bp) protein (209aa)
hypothetical protein id=5080339 bin=GWF1_Burkholderiales_GWF1_66_17 species=Leptothrix cholodnii genus=Leptothrix taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
hypothetical protein Tax=GWE1_Burkholderiales_65_30_curated
hypothetical protein
bjp_ig2157_scaffold_598_8
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6050..6964)
DNA (915bp) protein (305aa)
Uncharacterized protein id=1270020 bin=GWE1_Burkholderiales_65_30 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria rbh
hypothetical protein; K07115 Tax=GWE1_Burkholderiales_65_30_curated
hypothetical protein
bjp_ig2157_scaffold_598_9
Hydrogenophaga sp. T4, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


7194..7625
DNA (432bp) protein (144aa)
rplM; 50S ribosomal protein L13; K02871 large subunit ribosomal protein L13 id=5080337 bin=GWF1_Burkholderiales_GWF1_66_17 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD
50S ribosomal protein L13 {ECO:0000256|HAMAP-Rule:MF_01366, ECO:0000256|SAAS:SAAS00083943}; TaxID=1437444 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrog
rplM; 50S ribosomal protein L13
bjp_ig2157_scaffold_598_10
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


7638..8030
DNA (393bp) protein (131aa)
30S ribosomal protein S9 id=1270022 bin=GWE1_Burkholderiales_65_30 species=unknown genus=unknown taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria
rpsI; 30S ribosomal protein s9; K02996 small subunit ribosomal protein S9 Tax=GWE1_Burkholderiales_65_30_curated
rpsI; 30S ribosomal protein S9
bjp_ig2157_scaffold_598_11
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8140..8847
DNA (708bp) protein (236aa)
Uncharacterized protein id=1270023 bin=GWE1_Burkholderiales_65_30 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria rbh
hypothetical protein Tax=GWE1_Burkholderiales_65_30_curated
hypothetical protein
bjp_ig2157_scaffold_598_12
BJP_08E140C01_Burkholderiales_65_30, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8872..9270
DNA (399bp) protein (133aa)
Integral membrane protein CcmA involved in cell shape determination id=1270024 bin=GWE1_Burkholderiales_65_30 species=Polaromonas sp. CF318 genus=Polaromonas taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria
Integral membrane protein CcmA
Tax=BJP_08E140C01_Burkholderiales_65_30
bjp_ig2157_scaffold_598_13
Hydrogenophaga sp. T4, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9384..9749
DNA (366bp) protein (122aa)
iron-sulfur cluster insertion protein ErpA; K15724 iron-sulfur cluster insertion protein id=5080333 bin=GWF1_Burkholderiales_GWF1_66_17 species=unknown genus=unknown taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD
Putative iron-sulfur cluster insertion protein ErpA {ECO:0000256|HAMAP-Rule:MF_01380}; TaxID=1437444 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenoph
Iron--sulfur cluster insertion protein erpA
bjp_ig2157_scaffold_598_14
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9839..10483)
DNA (645bp) protein (215aa)
hypothetical protein id=5080332 bin=GWF1_Burkholderiales_GWF1_66_17 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
hypothetical protein Tax=GWE1_Burkholderiales_65_30_curated
hypothetical protein
bjp_ig2157_scaffold_598_15
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10588..12423)
DNA (1836bp) protein (612aa)
fad dependent oxidoreductase; K07137 Tax=GWE1_Burkholderiales_65_30_curated
fad dependent oxidoreductase; K07137 id=5080331 bin=GWF1_Burkholderiales_GWF1_66_17 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
uncharacterized FAD-dependent dehydrogenase
bjp_ig2157_scaffold_598_16
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12565..13170
DNA (606bp) protein (202aa)
hypothetical protein; K09965 hypothetical protein id=5080330 bin=GWF1_Burkholderiales_GWF1_66_17 species=unknown genus=Pseudomonas taxon_order=Pseudomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
hypothetical protein Tax=GWE1_Burkholderiales_65_30_curated
hypothetical protein
bjp_ig2157_scaffold_598_17
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13215..14579
DNA (1365bp) protein (455aa)
putative transporter-like membrane protein id=5080329 bin=GWF1_Burkholderiales_GWF1_66_17 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
putative transporter-like membrane protein Tax=GWE1_Burkholderiales_65_30_curated
multidrug transporter MATE
bjp_ig2157_scaffold_598_18
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14954..15646)
DNA (693bp) protein (231aa)
cyclic nucleotide-binding protein id=5080328 bin=GWF1_Burkholderiales_GWF1_66_17 species=Collimonas fungivorans genus=Collimonas taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
cyclic nucleotide-binding protein Tax=GWE1_Burkholderiales_65_30_curated
putative transcriptional regulator, Crp/Fnr family
bjp_ig2157_scaffold_598_19
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15957..16634
DNA (678bp) protein (226aa)
Transcriptional regulator, Crp/Fnr family id=1270031 bin=GWE1_Burkholderiales_65_30 species=Rubrivivax gelatinosus genus=Rubrivivax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria rbh
CarD family transcriptional regulator Tax=GWE1_Burkholderiales_65_30_curated
CarD family transcriptional regulator
bjp_ig2157_scaffold_598_20
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16708..18432)
DNA (1725bp) protein (575aa)
beta-lactamase-like protein Tax=GWE1_Burkholderiales_65_30_curated
Beta-lactamase domain protein id=1270032 bin=GWE1_Burkholderiales_65_30 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria rbh
beta-lactamase-like protein
bjp_ig2157_scaffold_598_21
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18460..19218)
DNA (759bp) protein (253aa)
Asp/Glu racemase; K01797 [EC:5.1.99.-] id=5080325 bin=GWF1_Burkholderiales_GWF1_66_17 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
asp/Glu racemase Tax=GWE1_Burkholderiales_65_30_curated
Asp/Glu racemase
bjp_ig2157_scaffold_598_22
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19215..19595)
DNA (381bp) protein (127aa)
GntR family transcriptional regulator id=5080324 bin=GWF1_Burkholderiales_GWF1_66_17 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD
GntR family transcriptional regulator Tax=GWE1_Burkholderiales_65_30_curated
GntR family transcriptional regulator
Displaying 22 items

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