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bjp_ig2069_scaffold_947_curated

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Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
bjp_ig2069_scaffold_947_curated_1
Smithella sp. ME-1, Smithella, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

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3..131
DNA (129bp) protein (43aa)
Uncharacterized protein n=1 Tax=Smithella sp. ME-1 RepID=V4EPB4_9DELT
Uncharacterized protein {ECO:0000313|EMBL:ESP62641.1}; TaxID=1380771 species="Bacteria; Proteobacteria; Deltaproteobacteria; Syntrophobacterales; Syntrophaceae; Smithella.;" source="Smithella sp. ME-1.;"
bjp_ig2069_scaffold_947_curated_2
Smithella sp. ME-1, Smithella, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

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176..418
DNA (243bp) protein (81aa)
Uncharacterized protein n=1 Tax=Smithella sp. ME-1 RepID=V4F8R1_9DELT
Uncharacterized protein {ECO:0000313|EMBL:ESP62770.1}; TaxID=1380771 species="Bacteria; Proteobacteria; Deltaproteobacteria; Syntrophobacterales; Syntrophaceae; Smithella.;" source="Smithella sp. ME-1.;"
bjp_ig2069_scaffold_947_curated_3
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(521..1138)
DNA (618bp) protein (206aa)
Putative uncharacterized protein n=1 Tax=Geobacter uraniireducens (strain Rf4) RepID=A5G4Q6_GEOUR
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABQ26774.1}; TaxID=351605 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
bjp_ig2069_scaffold_947_curated_4
Caldithrix abyssi, Caldithrix, Bacteria

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comp(1180..1728)
DNA (549bp) protein (183aa)
AMMECR1-domain protein n=1 Tax=Caldithrix abyssi DSM 13497 RepID=H1XUN8_9BACT
AMMECR1-domain protein {ECO:0000313|EMBL:EHO40537.1}; TaxID=880073 species="Bacteria; Caldithrix.;" source="Caldithrix abyssi DSM 13497.;"
AMMECR1-domain-containing protein; K09141 hypothetical protein
bjp_ig2069_scaffold_947_curated_5
Syntrophus aciditrophicus, Syntrophus, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(1820..2641)
DNA (822bp) protein (274aa)
MEMO1 family protein SYNAS_02840 n=1 Tax=Syntrophus aciditrophicus (strain SB) RepID=Q2LQ76_SYNAS rbh
cytoplasmic protein; K06990 rbh
MEMO1 family protein SYN_00074 {ECO:0000256|HAMAP-Rule:MF_00055}; TaxID=56780 species="Bacteria; Proteobacteria; Deltaproteobacteria; Syntrophobacterales; Syntrophaceae; Syntrophus.;" source="Syntrophus aciditrophicus (strain SB).;"
bjp_ig2069_scaffold_947_curated_6
Syntrophus aciditrophicus, Syntrophus, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(2647..4965)
DNA (2319bp) protein (773aa)
cysteinyl-tRNA synthetase (EC:6.1.1.16); K01883 cysteinyl-tRNA synthetase [EC:6.1.1.16] rbh
Cysteine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00041}; EC=6.1.1.16 {ECO:0000256|HAMAP-Rule:MF_00041};; Cysteinyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00041}; TaxID=56780 species="Bacteria; Proteobacteria; Deltaproteobacteria; Syntrophobacterales; Syntrophaceae; Syntrophus.;" source="Syntrophus aciditrophicus (strain SB).;"
Cysteine--tRNA ligase n=1 Tax=Syntrophus aciditrophicus (strain SB) RepID=Q2LQ77_SYNAS rbh
bjp_ig2069_scaffold_947_curated_7
unknown

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comp(5150..5566)
DNA (417bp) protein (139aa)
Hypothetical cytosolic protein id=3865432 bin=GWF2_Syntrophobacterales_56_9 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Syntrophobacterales_56_9 organism_group=Deltaproteobacteria
cytoplasmic protein
bjp_ig2069_scaffold_947_curated_trna_1
unknown

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5852..5925
DNA (74bp)
transferRNA
bjp_ig2069_scaffold_947_curated_8
Syntrophus aciditrophicus, Syntrophus, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(5959..7167)
DNA (1209bp) protein (403aa)
General secretion pathway protein F n=1 Tax=Syntrophus aciditrophicus (strain SB) RepID=Q2LQ79_SYNAS rbh
general secretion pathway protein F; K02653 type IV pilus assembly protein PilC rbh
General secretion pathway protein F {ECO:0000313|EMBL:ABC76159.1}; TaxID=56780 species="Bacteria; Proteobacteria; Deltaproteobacteria; Syntrophobacterales; Syntrophaceae; Syntrophus.;" source="Syntrophus aciditrophicus (strain SB).;"
bjp_ig2069_scaffold_947_curated_9
unknown

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comp(7279..8031)
DNA (753bp) protein (251aa)
23S rRNA Gm2251 methyltransferase (EC:2.1.1.-); K03218 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185]
23S rRNA Gm2251 methyltransferase id=4442536 bin=GWC2_Syntrophus__56_31 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Syntrophus__56_31 organism_group=Deltaproteobacteria organism_desc=Good +
bjp_ig2069_scaffold_947_curated_10
Syntrophus aciditrophicus, Syntrophus, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(8060..8809)
DNA (750bp) protein (250aa)
orotidine 5'-phosphate decarboxylase (EC:4.1.1.23); K01591 orotidine-5'-phosphate decarboxylase [EC:4.1.1.23]
Orotidine 5'-phosphate decarboxylase {ECO:0000255|HAMAP-Rule:MF_01200}; EC=4.1.1.23 {ECO:0000255|HAMAP-Rule:MF_01200};; OMP decarboxylase {ECO:0000255|HAMAP-Rule:MF_01200}; Short=OMPDCase {ECO:0000255|HAMAP-Rule:MF_01200};; Short=OMPdecase {ECO:0000255|HAMAP-Rule:MF_01200};; TaxID=56780 species="Bacteria; Proteobacteria; Deltaproteobacteria; Syntrophobacterales; Syntrophaceae; Syntrophus.;" source="Syntrophus aciditrophicus (strain SB).;"
Orotidine 5'-phosphate decarboxylase n=1 Tax=Syntrophus aciditrophicus (strain SB) RepID=PYRF_SYNAS
bjp_ig2069_scaffold_947_curated_11

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comp(8790..9059)
DNA (270bp) protein (90aa)
DNA-directed RNA polymerase subunit omega {ECO:0000256|HAMAP-Rule:MF_00366, ECO:0000256|SAAS:SAAS00054253}; Short=RNAP omega subunit {ECO:0000256|HAMAP-Rule:MF_00366};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_00366, ECO:0000256|SAAS:SAAS00094401};; RNA polymerase omega subunit {ECO:0000256|HAMAP-Rule:MF_00366}; Transcriptase subunit omega {ECO:0000256|HAMAP-Rule:MF_00366}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
rpoZ; DNA-directed RNA polymerase subunit omega; K03060 DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
DNA-directed RNA polymerase subunit omega id=4442540 bin=GWC2_Syntrophus__56_31 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Syntrophus__56_31 organism_group=Deltaproteobacteria organism_desc=Good +
bjp_ig2069_scaffold_947_curated_12
unknown

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comp(9086..9688)
DNA (603bp) protein (201aa)
guanylate kinase (EC:2.7.4.8); K00942 guanylate kinase [EC:2.7.4.8]
Guanylate kinase id=3865448 bin=GWF2_Syntrophobacterales_56_9 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Syntrophobacterales_56_9 organism_group=Deltaproteobacteria
bjp_ig2069_scaffold_947_curated_13
unknown

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comp(9696..10574)
DNA (879bp) protein (293aa)
Stress-induced protein id=4442544 bin=GWC2_Syntrophus__56_31 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Syntrophus__56_31 organism_group=Deltaproteobacteria organism_desc=Good +
hypothetical protein
bjp_ig2069_scaffold_947_curated_14
Syntrophus aciditrophicus, Syntrophus, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10613..11146)
DNA (534bp) protein (178aa)
Hypothetical GTP-binding protein n=1 Tax=Syntrophus aciditrophicus (strain SB) RepID=Q2LQ64_SYNAS
GTP-binding protein
Hypothetical GTP-binding protein {ECO:0000313|EMBL:ABC76153.1}; TaxID=56780 species="Bacteria; Proteobacteria; Deltaproteobacteria; Syntrophobacterales; Syntrophaceae; Syntrophus.;" source="Syntrophus aciditrophicus (strain SB).;"
bjp_ig2069_scaffold_947_curated_15
unknown

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comp(11143..12132)
DNA (990bp) protein (330aa)
rfaEa; d-beta-d-heptose 7-phosphate kinase (EC:2.7.1.-)
D-beta-D-heptose 7-phosphate kinase, domain I of bifunctional protein HldE id=4442548 bin=GWC2_Syntrophus__56_31 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWC2_Syntrophus__56_31 organism_group=Deltaproteobacteria organism_desc=Good +
bjp_ig2069_scaffold_947_curated_16
unknown

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12407..13111
DNA (705bp) protein (235aa)
hydroxyacylglutathione hydrolase (EC:3.1.2.6); K01069 hydroxyacylglutathione hydrolase [EC:3.1.2.6]
Hydroxyacylglutathione hydrolase id=4425062 bin=GWF2_Syntrophobacterales_56_9 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Syntrophobacterales_56_9 organism_group=Deltaproteobacteria
bjp_ig2069_scaffold_947_curated_17
Smithella sp. ME-1, Smithella, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13331..14083
DNA (753bp) protein (251aa)
1-acyl-sn-glycerol-3-phosphate acyltransferase {ECO:0000256|RuleBase:RU361267}; EC=2.3.1.51 {ECO:0000256|RuleBase:RU361267};; TaxID=1380771 species="Bacteria; Proteobacteria; Deltaproteobacteria; Syntrophobacterales; Syntrophaceae; Smithella.;" source="Smithella sp. ME-1.;"
1-acyl-sn-glycerol-3-phosphate acyltransferase (EC:2.3.1.51); K00655 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
1-acyl-sn-glycerol-3-phosphate acyltransferase n=1 Tax=Smithella sp. ME-1 RepID=V4FC79_9DELT rbh
bjp_ig2069_scaffold_947_curated_18
Smithella sp. ME-1, Smithella, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14254..16509
DNA (2256bp) protein (752aa)
Cell division protein FtsK n=1 Tax=Smithella sp. ME-1 RepID=V4GSK3_9DELT rbh
Cell division protein FtsK {ECO:0000313|EMBL:ESP62452.1}; TaxID=1380771 species="Bacteria; Proteobacteria; Deltaproteobacteria; Syntrophobacterales; Syntrophaceae; Smithella.;" source="Smithella sp. ME-1.;"
cell division protein; K03466 DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family rbh
bjp_ig2069_scaffold_947_curated_19
Smithella sp. ME-1, Smithella, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16506..17858
DNA (1353bp) protein (451aa)
Ribosomal protein S12 methylthiotransferase RimO {ECO:0000256|HAMAP-Rule:MF_01865, ECO:0000256|SAAS:SAAS00083292}; Short=S12 MTTase {ECO:0000256|HAMAP-Rule:MF_01865};; Short=S12 methylthiotransferase {ECO:0000256|HAMAP-Rule:MF_01865};; EC=2.8.4.4 {ECO:0000256|HAMAP-Rule:MF_01865, ECO:0000256|SAAS:SAAS00179441};; Ribosomal protein S12 (aspartate-C(3))-methylthiotransferase {ECO:0000256|HAMAP-Rule:MF_01865}; Ribosome maturation factor RimO {ECO:0000256|HAMAP-Rule:MF_01865}; TaxID=1380771 species="Bacteria; Pr
tRNA 2-methylthioadenine synthetase -like protein; K14441 ribosomal protein S12 methylthiotransferase [EC:2.-.-.-] rbh
Ribosomal protein S12 methylthiotransferase RimO n=1 Tax=Smithella sp. ME-1 RepID=V4ENR4_9DELT rbh
bjp_ig2069_scaffold_947_curated_20
Pseudoalteromonas rubra, Pseudoalteromonas, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(17925..18731)
DNA (807bp) protein (269aa)
Uncharacterized protein n=1 Tax=Pseudoalteromonas rubra ATCC 29570 RepID=U1LVR9_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:ERG45181.1}; TaxID=1117318 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Pseudoalteromonadaceae; Pseudoalteromonas.;" source="Pseudoalteromonas rubra ATCC 29570.;"
hypothetical protein
bjp_ig2069_scaffold_947_curated_21
unknown

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comp(18801..20078)
DNA (1278bp) protein (426aa)
hypothetical protein id=14428947 bin=bin3_NC10 species=Desulfobacca acetoxidans genus=Desulfobacca taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin3_NC10 organism_group=NC10
hypothetical protein
bjp_ig2069_scaffold_947_curated_22

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comp(20075..21343)
DNA (1269bp) protein (423aa)
hypothetical protein n=1 Tax=Atribacteria bacterium SCGC AAA252-M02 RepID=UPI00036E8C5C
Marine sediment metagenome DNA, contig: S01H4_C00065 {ECO:0000313|EMBL:GAG63139.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
hypothetical protein
bjp_ig2069_scaffold_947_curated_23
unknown

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comp(21732..22055)
DNA (324bp) protein (108aa)

This feature has no annotations

Displaying 24 items

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