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bjp_ig2103_scaffold_458_curated

Search features with annotation key words

Displaying items 1-30 of 55 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
bjp_ig2103_scaffold_458_curated_1
Dechloromonas aromatica, Dechloromonas, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

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3..134
DNA (132bp) protein (44aa)
NADH-plastoquinone oxidoreductase, chain 5; K00341 NADH-quinone oxidoreductase subunit L [EC:1.6.5.3]
NADH dehydrogenase subunit L {ECO:0000313|EMBL:AAZ45716.1}; EC=1.6.5.3 {ECO:0000313|EMBL:AAZ45716.1};; TaxID=159087 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Dechloromonas.;" source="Dechloromonas aromatica (strain RCB).;"
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2FFA4_9BACT
bjp_ig2103_scaffold_458_curated_2

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167..1651
DNA (1485bp) protein (495aa)
NADH dehydrogenase subunit M (EC:1.6.5.3); K00342 NADH-quinone oxidoreductase subunit M [EC:1.6.5.3] rbh
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2F1T9_9BACT rbh
Uncharacterized protein {ECO:0000313|EMBL:EKE16573.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
bjp_ig2103_scaffold_458_curated_3

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1664..3142
DNA (1479bp) protein (493aa)
NADH-quinone oxidoreductase subunit N {ECO:0000256|HAMAP-Rule:MF_00445}; EC=1.6.5.11 {ECO:0000256|HAMAP-Rule:MF_00445};; NADH dehydrogenase I subunit N {ECO:0000256|HAMAP-Rule:MF_00445}; NDH-1 subunit N {ECO:0000256|HAMAP-Rule:MF_00445}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
NADH dehydrogenase subunit N (EC:1.6.5.3); K00343 NADH-quinone oxidoreductase subunit N [EC:1.6.5.3] rbh
NADH-quinone oxidoreductase subunit N n=1 Tax=uncultured bacterium RepID=K2F510_9BACT rbh
bjp_ig2103_scaffold_458_curated_4
Dechloromonas aromatica, Dechloromonas, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

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3202..3744
DNA (543bp) protein (181aa)
NUDIX hydrolase; K01515 ADP-ribose pyrophosphatase [EC:3.6.1.13]
NUDIX hydrolase n=1 Tax=Dechloromonas aromatica (strain RCB) RepID=Q47HG2_DECAR
NUDIX hydrolase {ECO:0000313|EMBL:AAZ45719.1}; TaxID=159087 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Dechloromonas.;" source="Dechloromonas aromatica (strain RCB).;"
bjp_ig2103_scaffold_458_curated_5
unknown

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comp(3982..5100)
DNA (1119bp) protein (373aa)

This feature has no annotations

bjp_ig2103_scaffold_458_curated_6
Methanoregula formicica, Methanoregula, Methanomicrobiales, Methanomicrobia, Euryarchaeota, Archaea

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comp(5118..5861)
DNA (744bp) protein (248aa)
RNA 2',3'-cyclic phosphodiesterase {ECO:0000256|HAMAP-Rule:MF_01940}; Short=RNA 2',3'-CPDase {ECO:0000256|HAMAP-Rule:MF_01940};; EC=3.1.4.- {ECO:0000256|HAMAP-Rule:MF_01940};; TaxID=593750 species="Archaea; Euryarchaeota; Methanomicrobia; Methanomicrobiales; Methanoregulaceae; Methanoregula.;" source="Methanoregula formicica (strain DSM 22288 / NBRC 105244 / SMSP).;"
2'-5' RNA ligase n=1 Tax=Methanoregula formicica (strain DSM 22288 / NBRC 105244 / SMSP) RepID=L0HG00_METFS
2'-5' RNA ligase
bjp_ig2103_scaffold_458_curated_7
Methanoregula formicica, Methanoregula, Methanomicrobiales, Methanomicrobia, Euryarchaeota, Archaea

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5947..6216
DNA (270bp) protein (90aa)
Glutaredoxin-like protein n=1 Tax=Methanoregula formicica (strain DSM 22288 / NBRC 105244 / SMSP) RepID=L0HBY1_METFS
glutaredoxin-like protein
Glutaredoxin-like protein {ECO:0000313|EMBL:AGB02232.1}; TaxID=593750 species="Archaea; Euryarchaeota; Methanomicrobia; Methanomicrobiales; Methanoregulaceae; Methanoregula.;" source="Methanoregula formicica (strain DSM 22288 / NBRC 105244 / SMSP).;"
bjp_ig2103_scaffold_458_curated_8
Methanoregula formicica, Methanoregula, Methanomicrobiales, Methanomicrobia, Euryarchaeota, Archaea

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6216..8396
DNA (2181bp) protein (727aa)
Anaerobic ribonucleoside-triphosphate reductase n=1 Tax=Methanoregula formicica (strain DSM 22288 / NBRC 105244 / SMSP) RepID=L0HEN2_METFS rbh
Anaerobic ribonucleoside-triphosphate reductase {ECO:0000313|EMBL:AGB02231.1}; TaxID=593750 species="Archaea; Euryarchaeota; Methanomicrobia; Methanomicrobiales; Methanoregulaceae; Methanoregula.;" source="Methanoregula formicica (strain DSM 22288 / NBRC 105244 / SMSP).;"
anaerobic ribonucleoside-triphosphate reductase rbh
bjp_ig2103_scaffold_458_curated_9
unknown

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8442..9374
DNA (933bp) protein (311aa)

This feature has no annotations

bjp_ig2103_scaffold_458_curated_10
Methanoregula formicica, Methanoregula, Methanomicrobiales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(9446..9865)
DNA (420bp) protein (140aa)
Uncharacterized protein n=1 Tax=Methanoregula formicica (strain DSM 22288 / NBRC 105244 / SMSP) RepID=L0HE07_METFS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGB02230.1}; TaxID=593750 species="Archaea; Euryarchaeota; Methanomicrobia; Methanomicrobiales; Methanoregulaceae; Methanoregula.;" source="Methanoregula formicica (strain DSM 22288 / NBRC 105244 / SMSP).;"
bjp_ig2103_scaffold_458_curated_11
Methanoregula formicica, Methanoregula, Methanomicrobiales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(9855..10481)
DNA (627bp) protein (209aa)
Putative transcriptional regulator n=1 Tax=Methanoregula formicica (strain DSM 22288 / NBRC 105244 / SMSP) RepID=L0HGP0_METFS rbh
putative transcriptional regulator rbh
Putative transcriptional regulator {ECO:0000313|EMBL:AGB02229.1}; TaxID=593750 species="Archaea; Euryarchaeota; Methanomicrobia; Methanomicrobiales; Methanoregulaceae; Methanoregula.;" source="Methanoregula formicica (strain DSM 22288 / NBRC 105244 / SMSP).;"
bjp_ig2103_scaffold_458_curated_12
Methanoregula formicica, Methanoregula, Methanomicrobiales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(10672..12819)
DNA (2148bp) protein (716aa)
PAS domain S-box n=1 Tax=Methanoregula formicica (strain DSM 22288 / NBRC 105244 / SMSP) RepID=L0HE03_METFS rbh
PAS domain S-box rbh
PAS domain S-box {ECO:0000313|EMBL:AGB02225.1}; Flags: Precursor;; TaxID=593750 species="Archaea; Euryarchaeota; Methanomicrobia; Methanomicrobiales; Methanoregulaceae; Methanoregula.;" source="Methanoregula formicica (strain DSM 22288 / NBRC 105244 / SMSP).;"
bjp_ig2103_scaffold_458_curated_13
Acetohalobium arabaticum, Acetohalobium, Halanaerobiales, Clostridia, Firmicutes, Bacteria

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comp(12873..14102)
DNA (1230bp) protein (410aa)
PREDICTED: hypothetical protein LOC100639010 n=1 Tax=Amphimedon queenslandica RepID=UPI00021A3E3B
uncharacterized LOC100639010
Ankyrin {ECO:0000313|EMBL:ADL12524.1}; TaxID=574087 species="Bacteria; Firmicutes; Clostridia; Halanaerobiales; Halobacteroidaceae; Acetohalobium.;" source="Acetohalobium arabaticum (strain ATCC 49924 / DSM 5501 / Z-7288).;"
bjp_ig2103_scaffold_458_curated_14
Methanoregula formicica, Methanoregula, Methanomicrobiales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(14236..14838)
DNA (603bp) protein (201aa)
HEAT-like repeat protein n=1 Tax=Methanoregula formicica (strain DSM 22288 / NBRC 105244 / SMSP) RepID=L0HGN6_METFS
HEAT-like repeat protein
HEAT-like repeat protein {ECO:0000313|EMBL:AGB02224.1}; TaxID=593750 species="Archaea; Euryarchaeota; Methanomicrobia; Methanomicrobiales; Methanoregulaceae; Methanoregula.;" source="Methanoregula formicica (strain DSM 22288 / NBRC 105244 / SMSP).;"
bjp_ig2103_scaffold_458_curated_15
unknown

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comp(15115..15588)
DNA (474bp) protein (158aa)

This feature has no annotations

bjp_ig2103_scaffold_458_curated_16
unknown

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comp(15629..15916)
DNA (288bp) protein (96aa)

This feature has no annotations

bjp_ig2103_scaffold_458_curated_17
Methanoregula formicica, Methanoregula, Methanomicrobiales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

15980..16894
DNA (915bp) protein (305aa)
Uncharacterized protein n=1 Tax=Methanoregula formicica (strain DSM 22288 / NBRC 105244 / SMSP) RepID=L0HFZ1_METFS rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:AGB02223.1}; Flags: Precursor;; TaxID=593750 species="Archaea; Euryarchaeota; Methanomicrobia; Methanomicrobiales; Methanoregulaceae; Methanoregula.;" source="Methanoregula formicica (strain DSM 22288 / NBRC 105244 / SMSP).;"
bjp_ig2103_scaffold_458_curated_18
Methanoregula formicica, Methanoregula, Methanomicrobiales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(16900..17526)
DNA (627bp) protein (209aa)
Uncharacterized protein n=1 Tax=Methanoregula formicica (strain DSM 22288 / NBRC 105244 / SMSP) RepID=L0HBX2_METFS rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:AGB02222.1}; TaxID=593750 species="Archaea; Euryarchaeota; Methanomicrobia; Methanomicrobiales; Methanoregulaceae; Methanoregula.;" source="Methanoregula formicica (strain DSM 22288 / NBRC 105244 / SMSP).;"
bjp_ig2103_scaffold_458_curated_19
Methanoregula boonei, Methanoregula, Methanomicrobiales, Methanomicrobia, Euryarchaeota, Archaea

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comp(17588..19156)
DNA (1569bp) protein (523aa)
Putative uncharacterized protein n=1 Tax=Methanoregula boonei (strain 6A8) RepID=A7I6I0_METB6 rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:ABS55341.1}; TaxID=456442 species="Archaea; Euryarchaeota; Methanomicrobia; Methanomicrobiales; Methanoregulaceae; Methanoregula.;" source="Methanoregula boonei (strain 6A8).;"
bjp_ig2103_scaffold_458_curated_20
Methanoregula formicica, Methanoregula, Methanomicrobiales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

19481..20125
DNA (645bp) protein (215aa)
Uncharacterized protein n=1 Tax=Methanoregula formicica (strain DSM 22288 / NBRC 105244 / SMSP) RepID=L0HGN1_METFS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGB02219.1}; Flags: Precursor;; TaxID=593750 species="Archaea; Euryarchaeota; Methanomicrobia; Methanomicrobiales; Methanoregulaceae; Methanoregula.;" source="Methanoregula formicica (strain DSM 22288 / NBRC 105244 / SMSP).;"
bjp_ig2103_scaffold_458_curated_21
Methanoregula formicica, Methanoregula, Methanomicrobiales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

20190..20663
DNA (474bp) protein (158aa)
Uncharacterized protein family (UPF0153) n=1 Tax=Methanoregula formicica (strain DSM 22288 / NBRC 105244 / SMSP) RepID=L0HFY7_METFS
Uncharacterized protein family (UPF0153)
Uncharacterized protein family (UPF0153) {ECO:0000313|EMBL:AGB02218.1}; TaxID=593750 species="Archaea; Euryarchaeota; Methanomicrobia; Methanomicrobiales; Methanoregulaceae; Methanoregula.;" source="Methanoregula formicica (strain DSM 22288 / NBRC 105244 / SMSP).;"
bjp_ig2103_scaffold_458_curated_22
Methanosphaerula palustris, Methanosphaerula, Methanomicrobiales, Methanomicrobia, Euryarchaeota, Archaea

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comp(21175..21759)
DNA (585bp) protein (195aa)
Putative cache sensor protein n=1 Tax=Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) RepID=B8GI35_METPE
cache sensor protein
Putative cache sensor protein {ECO:0000313|EMBL:ACL16775.1}; Flags: Precursor;; TaxID=521011 species="Archaea; Euryarchaeota; Methanomicrobia; Methanomicrobiales; Methanoregulaceae; Methanosphaerula.;" source="Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c).;"
bjp_ig2103_scaffold_458_curated_23
unknown

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21808..21978
DNA (171bp) protein (57aa)

This feature has no annotations

bjp_ig2103_scaffold_458_curated_trna_2
unknown

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comp(21941..22013)
DNA (73bp)
transferRNA
bjp_ig2103_scaffold_458_curated_trna_1
unknown

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comp(22033..22138)
DNA (106bp)
transferRNA
bjp_ig2103_scaffold_458_curated_24
Methanoregula formicica, Methanoregula, Methanomicrobiales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

22408..23952
DNA (1545bp) protein (515aa)
Isopropylmalate/homocitrate/citramalate synthase n=1 Tax=Methanoregula formicica (strain DSM 22288 / NBRC 105244 / SMSP) RepID=L0HFY3_METFS rbh
isopropylmalate/homocitrate/citramalate synthase rbh
Isopropylmalate/homocitrate/citramalate synthase {ECO:0000313|EMBL:AGB02213.1}; TaxID=593750 species="Archaea; Euryarchaeota; Methanomicrobia; Methanomicrobiales; Methanoregulaceae; Methanoregula.;" source="Methanoregula formicica (strain DSM 22288 / NBRC 105244 / SMSP).;"
bjp_ig2103_scaffold_458_curated_25
unknown

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comp(23959..24345)
DNA (387bp) protein (129aa)

This feature has no annotations

bjp_ig2103_scaffold_458_curated_26
Methanoregula formicica, Methanoregula, Methanomicrobiales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(24618..24980)
DNA (363bp) protein (121aa)
Prefoldin subunit beta n=1 Tax=Methanoregula formicica (strain DSM 22288 / NBRC 105244 / SMSP) RepID=L0HEL6_METFS
prefoldin, beta subunit, archaeal
Prefoldin subunit beta {ECO:0000256|HAMAP-Rule:MF_00307}; GimC subunit beta {ECO:0000256|HAMAP-Rule:MF_00307}; TaxID=593750 species="Archaea; Euryarchaeota; Methanomicrobia; Methanomicrobiales; Methanoregulaceae; Methanoregula.;" source="Methanoregula formicica (strain DSM 22288 / NBRC 105244 / SMSP).;"
bjp_ig2103_scaffold_458_curated_27
Methanoregula formicica, Methanoregula, Methanomicrobiales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(25071..25334)
DNA (264bp) protein (88aa)
Uncharacterized protein n=1 Tax=Methanoregula formicica (strain DSM 22288 / NBRC 105244 / SMSP) RepID=L0HDY9_METFS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGB02210.1}; TaxID=593750 species="Archaea; Euryarchaeota; Methanomicrobia; Methanomicrobiales; Methanoregulaceae; Methanoregula.;" source="Methanoregula formicica (strain DSM 22288 / NBRC 105244 / SMSP).;"
bjp_ig2103_scaffold_458_curated_28
Methanoregula formicica, Methanoregula, Methanomicrobiales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(25398..25532)
DNA (135bp) protein (45aa)
DNA-directed RNA polymerase subunit P; K03059 DNA-directed RNA polymerase subunit P [EC:2.7.7.6]
RNA polymerase Rbp10 n=2 Tax=Methanoregula RepID=A7I9C4_METB6
DNA-directed RNA polymerase, subunit RPC10 (Contains C4-type Zn-finger) {ECO:0000313|EMBL:AGB02209.1}; TaxID=593750 species="Archaea; Euryarchaeota; Methanomicrobia; Methanomicrobiales; Methanoregulaceae; Methanoregula.;" source="Methanoregula formicica (strain DSM 22288 / NBRC 105244 / SMSP).;"
Displaying items 1-30 of 55 in total

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