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08E140C01_z5_2013_Ig3399_v2_scaffold_2413

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Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
08E140C01_z5_2013_Ig3399_v2_scaffold_2413_1
BJP_IG2103_Bacteroidetes_41_9, Bacteroidetes, Bacteria

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1..1809
DNA (1809bp) protein (603aa)
Dipeptidyl-peptidase IV (EC:3.4.14.5); K01278 dipeptidyl-peptidase 4 [EC:3.4.14.5]
Dipeptidyl-peptidase IV id=4887262 bin=GWC2_Bacteroidetes_40_13 species=Odoribacter splanchnicus genus=Odoribacter taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWC2_Bacteroidetes_40_13 organism_group=Bacteroidetes
Tax=BJP_IG2103_Bacteroidetes_41_9
08E140C01_z5_2013_Ig3399_v2_scaffold_2413_2
BJP_IG2103_Bacteroidetes_41_9, Bacteroidetes, Bacteria

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1914..2108
DNA (195bp) protein (65aa)
30S ribosomal protein S21 id=3832088 bin=GWF2_Bacteroidetes_43_11 species=Tannerella forsythia genus=Tannerella taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWF2_Bacteroidetes_43_11 organism_group=Bacteroidetes
30S ribosomal protein S21; K02970 small subunit ribosomal protein S21
Tax=BJP_IG2103_Bacteroidetes_41_9
08E140C01_z5_2013_Ig3399_v2_scaffold_2413_3
BJP_IG2103_Bacteroidetes_41_9, Bacteroidetes, Bacteria

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2221..3102
DNA (882bp) protein (294aa)
Tyrosine recombinase XerC n=1 Tax=Pedobacter saltans (strain ATCC 51119 / DSM 12145 / JCM 21818 / LMG 10337 / NBRC 100064 / NCIMB 13643) RepID=F0SCI8_PEDSD
integrase family protein; K03733 integrase/recombinase XerC
Tax=BJP_IG2103_Bacteroidetes_41_9
08E140C01_z5_2013_Ig3399_v2_scaffold_2413_4
BJP_IG2103_Bacteroidetes_41_9, Bacteroidetes, Bacteria

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3116..3412
DNA (297bp) protein (99aa)
Ribosomal subunit interface protein id=3832092 bin=GWF2_Bacteroidetes_43_11 species=Pedobacter heparinus genus=Pedobacter taxon_order=Sphingobacteriales taxon_class=Sphingobacteriia phylum=Bacteroidetes tax=GWF2_Bacteroidetes_43_11 organism_group=Bacteroidetes
ribosomal subunit interface protein; K05808 putative sigma-54 modulation protein
Tax=BJP_IG2103_Bacteroidetes_41_9
08E140C01_z5_2013_Ig3399_v2_scaffold_2413_trna_1
unknown

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3631..3704
DNA (74bp)
transferRNA
08E140C01_z5_2013_Ig3399_v2_scaffold_2413_trna_2
unknown

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3732..3813
DNA (82bp)
transferRNA
08E140C01_z5_2013_Ig3399_v2_scaffold_2413_trna_3
unknown

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3850..3922
DNA (73bp)
transferRNA
08E140C01_z5_2013_Ig3399_v2_scaffold_2413_trna_4
unknown

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3975..4046
DNA (72bp)
transferRNA
08E140C01_z5_2013_Ig3399_v2_scaffold_2413_5
BJP_IG2103_Bacteroidetes_41_9, Bacteroidetes, Bacteria

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4109..5296
DNA (1188bp) protein (396aa)
Elongation factor Tu id=3832095 bin=GWF2_Bacteroidetes_43_11 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Bacteroidetes_43_11 organism_group=Bacteroidetes rbh
translation elongation factor 1a (ef-1a/ef-tu); K02358 elongation factor Tu rbh
Tax=BJP_IG2103_Bacteroidetes_41_9
08E140C01_z5_2013_Ig3399_v2_scaffold_2413_trna_5
unknown

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5401..5473
DNA (73bp)
transferRNA
08E140C01_z5_2013_Ig3399_v2_scaffold_2413_6
GWF2_Bacteroidetes_43_11_curated, Bacteroidia, Bacteroidetes, Bacteria

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5496..5693
DNA (198bp) protein (66aa)
Preprotein translocase, SecE subunit id=1775657 bin=GWE2_Bacteroidetes_42_24 species=Owenweeksia hongkongensis genus=Owenweeksia taxon_order=Flavobacteriales taxon_class=Flavobacteriia phylum=Bacteroidetes tax=GWE2_Bacteroidetes_42_24 organism_group=Bacteroidetes
Preprotein translocase subunit SecE; K03073 preprotein translocase subunit SecE Tax=GWF2_Bacteroidetes_43_11_curated
Preprotein translocase subunit SecE; K03073 preprotein translocase subunit SecE
08E140C01_z5_2013_Ig3399_v2_scaffold_2413_7
BJP_IG2103_Bacteroidetes_41_9, Bacteroidetes, Bacteria

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5767..6309
DNA (543bp) protein (181aa)
transcription anti-termination protein id=1775654 bin=GWE2_Bacteroidetes_42_24 species=unknown genus=unknown taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWE2_Bacteroidetes_42_24 organism_group=Bacteroidetes
transcription antitermination protein nusG; K02601 transcriptional antiterminator NusG
Tax=BJP_IG2103_Bacteroidetes_41_9
08E140C01_z5_2013_Ig3399_v2_scaffold_2413_8
BJP_IG2103_Bacteroidetes_41_9, Bacteroidetes, Bacteria

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6353..6799
DNA (447bp) protein (149aa)
50S ribosomal protein L11 n=2 Tax=Pedobacter RepID=C6Y274_PEDHD
50S ribosomal protein L11; K02867 large subunit ribosomal protein L11
Tax=BJP_IG2103_Bacteroidetes_41_9
08E140C01_z5_2013_Ig3399_v2_scaffold_2413_9
BJP_IG2103_Bacteroidetes_41_9, Bacteroidetes, Bacteria

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6863..7558
DNA (696bp) protein (232aa)
50S ribosomal protein L1 id=3832104 bin=GWF2_Bacteroidetes_43_11 species=unknown genus=unknown taxon_order=Cytophagales taxon_class=Cytophagia phylum=Bacteroidetes tax=GWF2_Bacteroidetes_43_11 organism_group=Bacteroidetes
50S ribosomal protein L1P; K02863 large subunit ribosomal protein L1
Tax=BJP_IG2103_Bacteroidetes_41_9
08E140C01_z5_2013_Ig3399_v2_scaffold_2413_10
BJP_IG2103_Bacteroidetes_41_9, Bacteroidetes, Bacteria

Not on your lists


7598..8119
DNA (522bp) protein (174aa)
50S ribosomal protein L10 id=3642641 bin=GWF2_Bacteroidetes_41_31 species=unknown genus=unknown taxon_order=Flavobacteriales taxon_class=Flavobacteriia phylum=Bacteroidetes tax=GWF2_Bacteroidetes_41_31 organism_group=Bacteroidetes
50S ribosomal protein L10; K02864 large subunit ribosomal protein L10
Tax=BJP_IG2103_Bacteroidetes_41_9
08E140C01_z5_2013_Ig3399_v2_scaffold_2413_11
Fibrella aestuarina, Fibrella, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

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8193..8576
DNA (384bp) protein (128aa)
50S ribosomal protein L7/L12 n=1 Tax=Fibrella aestuarina BUZ 2 RepID=I0K4Q1_9BACT
ribosomal protein L7/L12
50S ribosomal protein L7/L12 {ECO:0000256|HAMAP-Rule:MF_00368}; TaxID=1166018 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Fibrella.;" source="Fibrella aestuarina BUZ 2.;"
08E140C01_z5_2013_Ig3399_v2_scaffold_2413_12
BJP_IG2103_Bacteroidetes_41_9, Bacteroidetes, Bacteria

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8715..12521
DNA (3807bp) protein (1269aa)
DNA-directed RNA polymerase subunit beta (EC:2.7.7.6); K03043 DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
DNA-directed RNA polymerase subunit beta id=3832107 bin=GWF2_Bacteroidetes_43_11 species=unknown genus=unknown taxon_order=Sphingobacteriales taxon_class=Sphingobacteriia phylum=Bacteroidetes tax=GWF2_Bacteroidetes_43_11 organism_group=Bacteroidetes rbh
Tax=BJP_IG2103_Bacteroidetes_41_9
08E140C01_z5_2013_Ig3399_v2_scaffold_2413_13
BJP_IG2103_Bacteroidetes_41_9, Bacteroidetes, Bacteria

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12627..16292
DNA (3666bp) protein (1222aa)
DNA-directed RNA polymerase subunit beta' (EC:2.7.7.6); K03046 DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
DNA-directed RNA polymerase subunit beta'''' id=1775612 bin=GWE2_Bacteroidetes_42_24 species=unknown genus=unknown taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWE2_Bacteroidetes_42_24 organism_group=Bacteroidetes
Tax=BJP_IG2103_Bacteroidetes_41_9
Displaying 18 items

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