ggKbase home page

08E140C01_z5_2013_Ig3399_v2_scaffold_1365

Search features with annotation key words

Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
08E140C01_z5_2013_Ig3399_v2_scaffold_1365_1
unknown

Not on your lists

comp(3..770)
DNA (768bp) protein (256aa)

This feature has no annotations

08E140C01_z5_2013_Ig3399_v2_scaffold_1365_2
unknown

Not on your lists

comp(983..1642)
DNA (660bp) protein (220aa)

This feature has no annotations

08E140C01_z5_2013_Ig3399_v2_scaffold_1365_3
RIFOXYC2_FULL_RIF_IGX_35_21_curated, RIF-IGX, Bacteria

Not on your lists

comp(1802..3166)
DNA (1365bp) protein (455aa)
ATP-dependent protease ATPase subunit HslU id=4759412 bin=GWA2_Ignavibacteria-rel_35_8 species=Ignavibacterium album genus=Ignavibacterium taxon_order=Ignavibacteriales taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=GWA2_Ignavibacteria-rel_35_8 organism_group=Ignavibacteria
hslU; ATP-dependent HslUV protease ATP-binding subunit; K03667 ATP-dependent HslUV protease ATP-binding subunit HslU Tax=RIFOXYC2_FULL_RIF_IGX_35_21_curated
ATP-dependent HslUV protease ATP-binding subunit
08E140C01_z5_2013_Ig3399_v2_scaffold_1365_4
BJP_IG2069_Ignavibacteriae_38_11, Ignavibacteriae, Bacteria

Not on your lists

comp(3179..3721)
DNA (543bp) protein (181aa)
ATP-dependent protease peptidase subunit; K01419 ATP-dependent HslUV protease, peptidase subunit HslV [EC:3.4.25.2] id=7718974 bin=BACIGN_2 species=Chlorobium limicola genus=Chlorobium taxon_order=Chlorobiales taxon_class=Chlorobia phylum=Chlorobi tax=BACIGN_2 organism_group=Unknown_CP
ATP-dependent HslUV protease peptidase subunit
Tax=BJP_IG2069_Ignavibacteriae_38_11
08E140C01_z5_2013_Ig3399_v2_scaffold_1365_5
unknown

Not on your lists

4345..4818
DNA (474bp) protein (158aa)

This feature has no annotations

08E140C01_z5_2013_Ig3399_v2_scaffold_1365_6
RIFOXYC2_FULL_RIF_IGX_35_21_curated, RIF-IGX, Bacteria

Not on your lists

comp(4989..5888)
DNA (900bp) protein (300aa)
GTPase Era id=1945017 bin=GWB2_Ignavibacteria_35_12 species=Ignavibacterium album genus=Ignavibacterium taxon_order=Ignavibacteriales taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=GWB2_Ignavibacteria_35_12 organism_group=Ignavibacteria organism_desc=Good
era; GTP-binding protein Era; K03595 GTP-binding protein Era Tax=RIFOXYC2_FULL_RIF_IGX_35_21_curated
GTP-binding protein Era
08E140C01_z5_2013_Ig3399_v2_scaffold_1365_7
RIFOXYC2_FULL_RIF_IGX_35_21_curated, RIF-IGX, Bacteria

Not on your lists

comp(5881..6162)
DNA (282bp) protein (94aa)
Putative uncharacterized protein id=1945015 bin=GWB2_Ignavibacteria_35_12 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWB2_Ignavibacteria_35_12 organism_group=Ignavibacteria organism_desc=Good
Putative uncharacterized protein Tax=RIFOXYC2_FULL_RIF_IGX_35_21_curated
08E140C01_z5_2013_Ig3399_v2_scaffold_1365_8
CG_Anaero_01, Anaerolineae, Chloroflexi, Bacteria

Not on your lists

6390..8312
DNA (1923bp) protein (641aa)
mod; type III restriction-modification system methylation subunit (EC:2.1.1.72) Tax=CG_Anaero_01
mod; type III restriction-modification system methylation subunit (EC:2.1.1.72) rbh
Type III restriction-modification system methylation subunit id=1915060 bin=GWE2_Gammaproteobacteria_42_36 species=Streptococcus gallolyticus genus=Streptococcus taxon_order=Lactobacillales taxon_class=Bacilli phylum=Firmicutes tax=GWE2_Gammaproteobacteria_42_36 organism_group=Gammaproteobacteria organism_desc=Small but looks good rbh
08E140C01_z5_2013_Ig3399_v2_scaffold_1365_9
BJP_IG2102_Flavobacteriales_34_12, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

8317..10854
DNA (2538bp) protein (846aa)
Type III site-specific deoxyribonuclease (EC:3.1.21.5)
Type III site-specific deoxyribonuclease n=1 Tax=Flexistipes sinusarabici (strain DSM 4947 / MAS 10) RepID=F8EA10_FLESM
Tax=BJP_IG2102_Flavobacteriales_34_12
08E140C01_z5_2013_Ig3399_v2_scaffold_1365_10
BJP_IG2069_Ignavibacteriae_38_11, Ignavibacteriae, Bacteria

Not on your lists

comp(11345..12976)
DNA (1632bp) protein (544aa)
dipeptidase id=2360160 bin=GWA2_Ignavibacteria-rel_35_8 species=Thermophagus xiamenensis genus=Thermophagus taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWA2_Ignavibacteria-rel_35_8 organism_group=Ignavibacteria
peptidase, family c69
Tax=BJP_IG2069_Ignavibacteriae_38_11
08E140C01_z5_2013_Ig3399_v2_scaffold_1365_11
GWF2_RIF_IGX_33_9_curated, RIF-IGX, Bacteria

Not on your lists

comp(13059..15704)
DNA (2646bp) protein (882aa)
S-layer domain-containing protein id=4005457 bin=GWF2_Ignavibacteria_33_9 species=Mariniradius saccharolyticus genus=Mariniradius taxon_order=Cytophagales taxon_class=Cytophagia phylum=Bacteroidetes tax=GWF2_Ignavibacteria_33_9 organism_group=Ignavibacteria rbh
hypothetical protein Tax=GWF2_RIF_IGX_33_9_curated
Ig domain-containing protein
08E140C01_z5_2013_Ig3399_v2_scaffold_1365_12
Halobacteroides halobius, Halobacteroides, Halanaerobiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15772..16458)
DNA (687bp) protein (229aa)
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase {ECO:0000256|HAMAP-Rule:MF_00108, ECO:0000256|SAAS:SAAS00030493}; EC=2.7.7.60 {ECO:0000256|HAMAP-Rule:MF_00108, ECO:0000256|SAAS:SAAS00030493};; 4-diphosphocytidyl-2C-methyl-D-erythritol synthase {ECO:0000256|HAMAP-Rule:MF_00108}; MEP cytidylyltransferase {ECO:0000256|HAMAP-Rule:MF_00108}; TaxID=748449 species="Bacteria; Firmicutes; Clostridia; Halanaerobiales; Halobacteroidaceae; Halobacteroides.;" source="Halobacteroides halobius (strain ATCC 35273
hypothetical protein n=1 Tax=Orenia marismortui RepID=UPI00036B4BDB
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
08E140C01_z5_2013_Ig3399_v2_scaffold_1365_13
BJP_IG2069_Ignavibacteriae_38_11, Ignavibacteriae, Bacteria

Not on your lists

comp(16455..17738)
DNA (1284bp) protein (428aa)
Uncharacterized protein id=4221779 bin=GWA2_Ignavibacteria-rel_35_8 species=Ignavibacterium album genus=Ignavibacterium taxon_order=Ignavibacteriales taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=GWA2_Ignavibacteria-rel_35_8 organism_group=Ignavibacteria
hypothetical protein
Tax=BJP_IG2069_Ignavibacteriae_38_11
08E140C01_z5_2013_Ig3399_v2_scaffold_1365_14
BJP_IG2069_Ignavibacteriae_38_11, Ignavibacteriae, Bacteria

Not on your lists

comp(17828..19039)
DNA (1212bp) protein (404aa)
hypothetical protein; K02342 DNA polymerase III subunit epsilon [EC:2.7.7.7]
DNA polymerase III, epsilon subunit id=2262468 bin=GWB2_Ignavibacteria_35_12 species=Chloroherpeton thalassium genus=Chloroherpeton taxon_order=Chlorobiales taxon_class=Chlorobia phylum=Chlorobi tax=GWB2_Ignavibacteria_35_12 organism_group=Ignavibacteria organism_desc=Good
Tax=BJP_IG2069_Ignavibacteriae_38_11
08E140C01_z5_2013_Ig3399_v2_scaffold_1365_15
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19156..20406)
DNA (1251bp) protein (417aa)
Fmu (Sun) domain-containing protein; K03500 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]
Fmu (Sun) domain protein n=1 Tax=Chloroherpeton thalassium (strain ATCC 35110 / GB-78) RepID=B3QS48_CHLT3
Uncharacterized protein {ECO:0000313|EMBL:AIL12404.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
08E140C01_z5_2013_Ig3399_v2_scaffold_1365_16
RIFOXYC2_FULL_RIF_IGX_35_21_curated, RIF-IGX, Bacteria

Not on your lists

20760..21350
DNA (591bp) protein (197aa)
Putative uncharacterized protein id=2262471 bin=GWB2_Ignavibacteria_35_12 species=Caldithrix abyssi genus=Caldithrix taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWB2_Ignavibacteria_35_12 organism_group=Ignavibacteria organism_desc=Good
glycoside hydrolase family 43 Tax=RIFOXYC2_FULL_RIF_IGX_35_21_curated
FG-GAP repeat protein
08E140C01_z5_2013_Ig3399_v2_scaffold_1365_17
GWC1_OD1_36_108, Parcubacteria, Bacteria

Not on your lists

21407..26737
DNA (5331bp) protein (1777aa)
pjd:Pjdr2_1430 hypothetical protein Tax=GWC1_OD1_36_108
hypothetical protein id=7718348 bin=BACIGN_2 species=Paenibacillus curdlanolyticus genus=Paenibacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=BACIGN_2 organism_group=Unknown_CP
hypothetical protein
Displaying 17 items

View Taxonomy