ggKbase home page

08E140C01_z5_2013_Ig3399_v2_scaffold_836

Search features with annotation key words

Displaying 29 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
08E140C01_z5_2013_Ig3399_v2_scaffold_836_1
RIFOXYC2_FULL_RIF_IGX_35_21_curated, RIF-IGX, Bacteria

Not on your lists

comp(1..1233)
DNA (1233bp) protein (411aa)
Polysaccharide biosynthesis protein id=2187583 bin=GWB2_Ignavibacteria_35_12 species=marine gamma proteobacterium HTCC2143 genus=unknown taxon_order=unknown taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWB2_Ignavibacteria_35_12 organism_group=Ignavibacteria organism_desc=Good
Polysaccharide biosynthesis protein Tax=RIFOXYC2_FULL_RIF_IGX_35_21_curated
08E140C01_z5_2013_Ig3399_v2_scaffold_836_2
GWF2_RIF_IGX_33_9_curated, RIF-IGX, Bacteria

Not on your lists

comp(1223..3127)
DNA (1905bp) protein (635aa)
Heparinase II/III-like protein id=4356883 bin=GWF2_Ignavibacteria_33_9 species=Clostridium perfringens genus=Clostridium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_Ignavibacteria_33_9 organism_group=Ignavibacteria
heparinase II/III-like protein Tax=GWF2_RIF_IGX_33_9_curated
heparinase II/III-like protein
08E140C01_z5_2013_Ig3399_v2_scaffold_836_3
BJP_IG2069_Ignavibacteriae_38_11, Ignavibacteriae, Bacteria

Not on your lists

3225..3419
DNA (195bp) protein (65aa)
hypothetical protein id=2187668 bin=GWB2_Ignavibacteria_35_12 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWB2_Ignavibacteria_35_12 organism_group=Ignavibacteria organism_desc=Good
Tax=BJP_IG2069_Ignavibacteriae_38_11
08E140C01_z5_2013_Ig3399_v2_scaffold_836_4
RIFOXYC2_FULL_RIF_IGX_35_21_curated, RIF-IGX, Bacteria

Not on your lists

3422..4285
DNA (864bp) protein (288aa)
Putative uncharacterized protein id=2187669 bin=GWB2_Ignavibacteria_35_12 species=Clostridium sp. 7_3_54FAA genus=Clostridium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWB2_Ignavibacteria_35_12 organism_group=Ignavibacteria organism_desc=Good
membrane-associated CAAX amino terminal protease; K07052 Tax=RIFOXYC2_FULL_RIF_IGX_35_21_curated
metal-dependent membrane protease; K07052
08E140C01_z5_2013_Ig3399_v2_scaffold_836_5
RIFOXYC2_FULL_RIF_IGX_35_21_curated, RIF-IGX, Bacteria

Not on your lists

4282..5433
DNA (1152bp) protein (384aa)
Tetratricopeptide domain-containing protein id=2201068 bin=GWA2_Ignavibacteria-rel_35_8 species=Melioribacter roseus genus=Melioribacter taxon_order=Ignavibacteriales taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=GWA2_Ignavibacteria-rel_35_8 organism_group=Ignavibacteria
tetratricopeptide domain-containing protein Tax=RIFOXYC2_FULL_RIF_IGX_35_21_curated
hypothetical protein
08E140C01_z5_2013_Ig3399_v2_scaffold_836_6
BJP_IG2069_Ignavibacteriae_38_11, Ignavibacteriae, Bacteria

Not on your lists

5375..6625
DNA (1251bp) protein (417aa)
Uncharacterized protein id=2187671 bin=GWB2_Ignavibacteria_35_12 species=Ignavibacterium album genus=Ignavibacterium taxon_order=Ignavibacteriales taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=GWB2_Ignavibacteria_35_12 organism_group=Ignavibacteria organism_desc=Good
hypothetical protein
Tax=BJP_IG2069_Ignavibacteriae_38_11
08E140C01_z5_2013_Ig3399_v2_scaffold_836_7
BJP_IG2069_Ignavibacteriae_38_11, Ignavibacteriae, Bacteria

Not on your lists

6627..7142
DNA (516bp) protein (172aa)
putative GCN5-related N-acetyltransferase; K03823 phosphinothricin acetyltransferase [EC:2.3.1.183]
GCN5-related N-acetyltransferase n=1 Tax=Cyanothece sp. CCY0110 RepID=A3IK63_9CHRO
Tax=BJP_IG2069_Ignavibacteriae_38_11
08E140C01_z5_2013_Ig3399_v2_scaffold_836_8
BJP_IG2102_Ignavibacteriales_35_8, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

Not on your lists

comp(7163..7807)
DNA (645bp) protein (215aa)
Uncharacterized protein n=1 Tax=Melioribacter roseus (strain P3M) RepID=I6Z448_MELRP
hypothetical protein
Tax=BJP_IG2102_Ignavibacteriales_35_8
08E140C01_z5_2013_Ig3399_v2_scaffold_836_9
GWB2_Ignavibacteria_35_6b_curated, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

Not on your lists

comp(8066..8722)
DNA (657bp) protein (219aa)
Uncharacterized protein n=1 Tax=Melioribacter roseus (strain P3M) RepID=I6Z448_MELRP
hypothetical protein Tax=GWB2_Ignavibacteria_35_6b_curated
hypothetical protein
08E140C01_z5_2013_Ig3399_v2_scaffold_836_10
BJP_IG2069_Ignavibacteriae_38_11, Ignavibacteriae, Bacteria

Not on your lists

comp(8790..9836)
DNA (1047bp) protein (349aa)
Putative permease id=4221785 bin=GWA2_Ignavibacteria-rel_35_8 species=Owenweeksia hongkongensis genus=Owenweeksia taxon_order=Flavobacteriales taxon_class=Flavobacteriia phylum=Bacteroidetes tax=GWA2_Ignavibacteria-rel_35_8 organism_group=Ignavibacteria
putative permease
Tax=BJP_IG2069_Ignavibacteriae_38_11
08E140C01_z5_2013_Ig3399_v2_scaffold_836_11
BJP_IG2069_Ignavibacteriae_38_11, Ignavibacteriae, Bacteria

Not on your lists


10048..12537
DNA (2490bp) protein (830aa)
gyrA; DNA gyrase subunit A; K02469 DNA gyrase subunit A [EC:5.99.1.3] id=7718053 bin=BACIGN_2 species=Ignavibacterium album genus=Ignavibacterium taxon_order=Ignavibacteriales taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=BACIGN_2 organism_group=Unknown_CP
DNA gyrase subunit A
Tax=BJP_IG2069_Ignavibacteriae_38_11
08E140C01_z5_2013_Ig3399_v2_scaffold_836_12
RIFOXYC2_FULL_RIF_IGX_35_21_curated, RIF-IGX, Bacteria

Not on your lists

12539..14425
DNA (1887bp) protein (629aa)
Outer membrane cobalamin receptor protein id=1903804 bin=GWB2_Ignavibacteria_35_12 species=RAAC39 genus=RAAC39 taxon_order=RAAC39 taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=GWB2_Ignavibacteria_35_12 organism_group=Ignavibacteria organism_desc=Good
Outer membrane cobalamin receptor protein Tax=RIFOXYC2_FULL_RIF_IGX_35_21_curated
08E140C01_z5_2013_Ig3399_v2_scaffold_836_13
RIFOXYC2_FULL_RIF_IGX_35_21_curated, RIF-IGX, Bacteria

Not on your lists

comp(14422..19920)
DNA (5499bp) protein (1833aa)
Uncharacterized protein id=2147431 bin=GWB2_Ignavibacteria_35_12 species=Ignavibacterium album genus=Ignavibacterium taxon_order=Ignavibacteriales taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=GWB2_Ignavibacteria_35_12 organism_group=Ignavibacteria organism_desc=Good
hypothetical protein Tax=RIFOXYC2_FULL_RIF_IGX_35_21_curated
hypothetical protein
08E140C01_z5_2013_Ig3399_v2_scaffold_836_14
BJP_IG2069_Ignavibacteriae_38_11, Ignavibacteriae, Bacteria

Not on your lists

comp(20036..21367)
DNA (1332bp) protein (444aa)
hypothetical protein id=2147433 bin=GWB2_Ignavibacteria_35_12 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWB2_Ignavibacteria_35_12 organism_group=Ignavibacteria organism_desc=Good
Tax=BJP_IG2069_Ignavibacteriae_38_11
08E140C01_z5_2013_Ig3399_v2_scaffold_836_15
BJP_IG2069_Ignavibacteriae_38_11, Ignavibacteriae, Bacteria

Not on your lists

21728..23068
DNA (1341bp) protein (447aa)
L-lysine 6-transaminase (EC:2.6.1.36); K03918 L-lysine 6-transaminase [EC:2.6.1.36] id=7718056 bin=BACIGN_2 species=Rhodothermus marinus genus=Rhodothermus taxon_order=Bacteroidetes Order II. Incertae sedis taxon_class=unknown phylum=Bacteroidetes tax=BACIGN_2 organism_group=Unknown_CP
L-lysine 6-transaminase
Tax=BJP_IG2069_Ignavibacteriae_38_11
08E140C01_z5_2013_Ig3399_v2_scaffold_836_16
RIFOXYC2_FULL_RIF_IGX_35_21_curated, RIF-IGX, Bacteria

Not on your lists

comp(23061..24053)
DNA (993bp) protein (331aa)
DHH domain-containing protein id=2187672 bin=GWB2_Ignavibacteria_35_12 species=Melioribacter roseus genus=Melioribacter taxon_order=Ignavibacteriales taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=GWB2_Ignavibacteria_35_12 organism_group=Ignavibacteria organism_desc=Good
DHH domain-containing protein Tax=RIFOXYC2_FULL_RIF_IGX_35_21_curated
DHH domain-containing protein
08E140C01_z5_2013_Ig3399_v2_scaffold_836_17
BJP_IG2069_Ignavibacteriae_38_11, Ignavibacteriae, Bacteria

Not on your lists

24121..24981
DNA (861bp) protein (287aa)
serine/threonine protein kinase with PASTA sensor(s); K08884 serine/threonine protein kinase, bacterial [EC:2.7.11.1]
Serine/threonine protein kinase id=3793740 bin=GWF2_Ignavibacteria_33_9 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=TA06 tax=GWF2_Ignavibacteria_33_9 organism_group=Ignavibacteria
Tax=BJP_IG2069_Ignavibacteriae_38_11
08E140C01_z5_2013_Ig3399_v2_scaffold_836_18
unknown

Not on your lists

25054..25884
DNA (831bp) protein (277aa)

This feature has no annotations

08E140C01_z5_2013_Ig3399_v2_scaffold_836_19
BJP_IG2069_Ignavibacteriae_38_11, Ignavibacteriae, Bacteria

Not on your lists

26014..28275
DNA (2262bp) protein (754aa)
UvrD/REP helicase; K03657 DNA helicase II / ATP-dependent DNA helicase PcrA [EC:3.6.4.12]
UvrD/REP helicase id=1987048 bin=GWB2_Ignavibacteria_35_12 species=Rhodothermus marinus genus=Rhodothermus taxon_order=Bacteroidetes Order II. Incertae sedis taxon_class=unknown phylum=Bacteroidetes tax=GWB2_Ignavibacteria_35_12 organism_group=Ignavibacteria organism_desc=Good
Tax=BJP_IG2069_Ignavibacteriae_38_11
08E140C01_z5_2013_Ig3399_v2_scaffold_836_20
unknown

Not on your lists

comp(28290..28910)
DNA (621bp) protein (207aa)

This feature has no annotations

08E140C01_z5_2013_Ig3399_v2_scaffold_836_21
BJP_IG2069_Ignavibacteriae_38_11, Ignavibacteriae, Bacteria

Not on your lists

comp(28992..30221)
DNA (1230bp) protein (410aa)
diaminopimelate decarboxylase (EC:4.1.1.20); K01586 diaminopimelate decarboxylase [EC:4.1.1.20]
diaminopimelate decarboxylase n=1 Tax=Marinimicrobia bacterium JGI 0000039-D08 RepID=UPI0003A49CFD rbh
Tax=BJP_IG2069_Ignavibacteriae_38_11
08E140C01_z5_2013_Ig3399_v2_scaffold_836_22
BJP_IG2069_Ignavibacteriae_38_11, Ignavibacteriae, Bacteria

Not on your lists

comp(30241..31593)
DNA (1353bp) protein (451aa)
aspartate kinase (EC:2.7.2.4); K00928 aspartate kinase [EC:2.7.2.4]
Aspartokinase n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q01R25_SOLUE
Tax=BJP_IG2069_Ignavibacteriae_38_11
08E140C01_z5_2013_Ig3399_v2_scaffold_836_23
BJP_IG2069_Ignavibacteriae_38_11, Ignavibacteriae, Bacteria

Not on your lists

comp(31599..32894)
DNA (1296bp) protein (432aa)
adenylosuccinate lyase; K01756 adenylosuccinate lyase [EC:4.3.2.2]
Adenylosuccinate lyase id=2363419 bin=GWA2_Ignavibacteria-rel_35_8 species=Ignavibacterium album genus=Ignavibacterium taxon_order=Ignavibacteriales taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=GWA2_Ignavibacteria-rel_35_8 organism_group=Ignavibacteria rbh
Tax=BJP_IG2069_Ignavibacteriae_38_11
08E140C01_z5_2013_Ig3399_v2_scaffold_836_24
GWF2_RIF_IGX_33_9_curated, RIF-IGX, Bacteria

Not on your lists

comp(32891..33565)
DNA (675bp) protein (225aa)
molecular chaperone; K14742 hypothetical protease [EC:3.4.-.-] id=7717932 bin=BACIGN_2 species=Prevotella dentalis genus=Prevotella taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=BACIGN_2 organism_group=Unknown_CP
hypothetical protein; K14742 hypothetical protease [EC:3.4.-.-]
hypothetical protein Tax=GWF2_RIF_IGX_33_9_curated
08E140C01_z5_2013_Ig3399_v2_scaffold_836_25
RIFOXYC2_FULL_RIF_IGX_35_21_curated, RIF-IGX, Bacteria

Not on your lists

comp(33562..36828)
DNA (3267bp) protein (1089aa)
transcription-repair coupling factor; K03723 transcription-repair coupling factor (superfamily II helicase) [EC:3.6.4.-] Tax=RIFOXYC2_FULL_RIF_IGX_35_21_curated
transcription-repair coupling factor; K03723 transcription-repair coupling factor (superfamily II helicase) [EC:3.6.4.-] rbh
Transcription-repair coupling factor id=2231291 bin=GWB2_Ignavibacteria_35_12 species=Sphingobacterium spiritivorum genus=Sphingobacterium taxon_order=Sphingobacteriales taxon_class=Sphingobacteriia phylum=Bacteroidetes tax=GWB2_Ignavibacteria_35_12 organism_group=Ignavibacteria organism_desc=Good
08E140C01_z5_2013_Ig3399_v2_scaffold_836_26
BJP_IG2069_Ignavibacteriae_38_11, Ignavibacteriae, Bacteria

Not on your lists

comp(36818..38119)
DNA (1302bp) protein (434aa)
GTPase HflX id=2231289 bin=GWB2_Ignavibacteria_35_12 species=Ignavibacterium album genus=Ignavibacterium taxon_order=Ignavibacteriales taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=GWB2_Ignavibacteria_35_12 organism_group=Ignavibacteria organism_desc=Good
GTP-binding protein HflX
Tax=BJP_IG2069_Ignavibacteriae_38_11
08E140C01_z5_2013_Ig3399_v2_scaffold_836_27
unknown

Not on your lists

38157..38663
DNA (507bp) protein (169aa)

This feature has no annotations

08E140C01_z5_2013_Ig3399_v2_scaffold_836_28
BJP_IG2069_Ignavibacteriae_38_11, Ignavibacteriae, Bacteria

Not on your lists

comp(38660..39193)
DNA (534bp) protein (178aa)
NADH-quinone oxidoreductase subunit C id=4871076 bin=GWA2_Ignavibacteria-rel_35_8 species=Melioribacter roseus genus=Melioribacter taxon_order=Ignavibacteriales taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=GWA2_Ignavibacteria-rel_35_8 organism_group=Ignavibacteria
NADH dehydrogenase subunit C
Tax=BJP_IG2069_Ignavibacteriae_38_11
08E140C01_z5_2013_Ig3399_v2_scaffold_836_29
BJP_IG2069_Ignavibacteriae_38_11, Ignavibacteriae, Bacteria

Not on your lists

39279..40241
DNA (963bp) protein (321aa)
MscS Mechanosensitive ion channel n=1 Tax=Marivirga tractuosa (strain ATCC 23168 / DSM 4126 / NBRC 15989 / NCIMB 1408 / VKM B-1430 / H-43) RepID=E4TR74_MARTH
mscs mechanosensitive ion channel; K16052 MscS family membrane protein YnaI
Tax=BJP_IG2069_Ignavibacteriae_38_11
Displaying 29 items

View Taxonomy