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08E140C01_z5_2013_Ig3399_v2_scaffold_1193

Search features with annotation key words

Displaying items 1-30 of 33 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
08E140C01_z5_2013_Ig3399_v2_scaffold_1193_1
Syntrophomonas zehnderi, Syntrophomonas, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3..1259)
DNA (1257bp) protein (419aa)
Ferrous iron transport protein B {ECO:0000313|EMBL:CFX18126.1}; TaxID=690567 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Syntrophomonadaceae; Syntrophomonas.;" source="Syntrophomonas zehnderi OL-4.;"
Ferrous iron transport protein B id=4553386 bin=GWC2_Planctomycetes_45_44 species=Desulfobacca acetoxidans genus=Desulfobacca taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Planctomycetes_45_44 organism_group=Planctomycetes organism_desc=Novel; good
ferrous iron transport protein B; K04759 ferrous iron transport protein B
08E140C01_z5_2013_Ig3399_v2_scaffold_1193_2
Lachnoclostridium phytofermentans, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1259..1510)
DNA (252bp) protein (84aa)
FeoA family protein n=1 Tax=Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg) RepID=A9KN72_CLOPH
FeoA family protein; K04758 ferrous iron transport protein A
FeoA family protein {ECO:0000313|EMBL:ABX41571.1}; TaxID=357809 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg); (Lachnoclostridium phytofermentans).;"
08E140C01_z5_2013_Ig3399_v2_scaffold_1193_3
Syntrophaceticus schinkii, Syntrophaceticus, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

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comp(1542..1928)
DNA (387bp) protein (129aa)
iron dependent repressor n=1 Tax=Acetivibrio cellulolyticus RepID=UPI0001E2F084
Putative Iron dependent repressor {ECO:0000313|EMBL:CEO90114.1}; TaxID=499207 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacterales Family III. Incertae Sedis; Syntrophaceticus.;" source="Syntrophaceticus schinkii.;"
iron dependent repressor; K03709 DtxR family transcriptional regulator, Mn-dependent transcriptional regulator
08E140C01_z5_2013_Ig3399_v2_scaffold_1193_4
Clostridiaceae bacterium BRH_c20a, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2478..3848
DNA (1371bp) protein (457aa)
Magnesium transporter n=1 Tax=Thermincola potens (strain JR) RepID=D5XAQ2_THEPJ rbh
Magnesium transporter MgtE {ECO:0000256|RuleBase:RU362011}; TaxID=1629719 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae.;" source="Clostridiaceae bacterium BRH_c20a.;"
magnesium transporter; K06213 magnesium transporter rbh
08E140C01_z5_2013_Ig3399_v2_scaffold_1193_5
Heliobacterium modesticaldum, Heliobacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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3845..4528
DNA (684bp) protein (228aa)
deoC; deoxyribose-phosphate aldolase; K01619 deoxyribose-phosphate aldolase [EC:4.1.2.4]
Deoxyribose-phosphate aldolase {ECO:0000256|HAMAP-Rule:MF_00114, ECO:0000256|SAAS:SAAS00058202}; Short=DERA {ECO:0000256|HAMAP-Rule:MF_00114};; EC=4.1.2.4 {ECO:0000256|HAMAP-Rule:MF_00114, ECO:0000256|SAAS:SAAS00058202};; 2-deoxy-D-ribose 5-phosphate aldolase {ECO:0000256|HAMAP-Rule:MF_00114}; Phosphodeoxyriboaldolase {ECO:0000256|HAMAP-Rule:MF_00114}; TaxID=498761 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Heliobacteriaceae; Heliobacterium.;" source="Heliobacterium modesticaldum (strain ATCC
Deoxyribose-phosphate aldolase n=1 Tax=Heliobacterium modesticaldum (strain ATCC 51547 / Ice1) RepID=B0TAF2_HELMI
08E140C01_z5_2013_Ig3399_v2_scaffold_1193_6
unknown

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4686..4823
DNA (138bp) protein (46aa)

This feature has no annotations

08E140C01_z5_2013_Ig3399_v2_scaffold_1193_7
BJP_08E140C01_Clostridiales_46_19, Clostridiales, Clostridia, Firmicutes, Bacteria

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4820..5593
DNA (774bp) protein (258aa)
DNA repair protein RecO n=1 Tax=Thermincola potens (strain JR) RepID=D5XAP1_THEPJ
DNA repair protein RecO; K03584 DNA repair protein RecO (recombination protein O)
Tax=BJP_08E140C01_Clostridiales_46_19
08E140C01_z5_2013_Ig3399_v2_scaffold_1193_8
Clostridiaceae bacterium BRH_c20a, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5664..6113
DNA (450bp) protein (150aa)
Uncharacterized protein n=1 Tax=Desulfotomaculum ruminis (strain ATCC 23193 / DSM 2154 / NCIB 8452 / DL) RepID=F6DMX5_DESRL
Uncharacterized protein {ECO:0000313|EMBL:KJS22675.1}; TaxID=1629719 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae.;" source="Clostridiaceae bacterium BRH_c20a.;"
hypothetical protein
08E140C01_z5_2013_Ig3399_v2_scaffold_1193_9
Clostridiaceae bacterium BRH_c20a, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6638..7555
DNA (918bp) protein (306aa)
Glycine--tRNA ligase alpha subunit {ECO:0000256|HAMAP-Rule:MF_00254, ECO:0000256|SAAS:SAAS00104892}; EC=6.1.1.14 {ECO:0000256|HAMAP-Rule:MF_00254, ECO:0000256|SAAS:SAAS00104898};; Glycyl-tRNA synthetase alpha subunit {ECO:0000256|HAMAP-Rule:MF_00254}; TaxID=1629719 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae.;" source="Clostridiaceae bacterium BRH_c20a.;"
glyQ; glycyl-tRNA synthetase subunit alpha; K01878 glycyl-tRNA synthetase alpha chain [EC:6.1.1.14] rbh
Glycine--tRNA ligase alpha subunit n=1 Tax=Heliobacterium modesticaldum (strain ATCC 51547 / Ice1) RepID=SYGA_HELMI rbh
08E140C01_z5_2013_Ig3399_v2_scaffold_1193_10
Clostridiaceae bacterium BRH_c20a, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7559..9634
DNA (2076bp) protein (692aa)
Glycine--tRNA ligase beta subunit {ECO:0000256|HAMAP-Rule:MF_00255, ECO:0000256|SAAS:SAAS00039777}; EC=6.1.1.14 {ECO:0000256|HAMAP-Rule:MF_00255, ECO:0000256|SAAS:SAAS00039811};; Glycyl-tRNA synthetase beta subunit {ECO:0000256|HAMAP-Rule:MF_00255}; TaxID=1629719 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae.;" source="Clostridiaceae bacterium BRH_c20a.;"
glycyl-tRNA synthetase subunit beta (EC:6.1.1.14); K01879 glycyl-tRNA synthetase beta chain [EC:6.1.1.14] rbh
Glycine--tRNA ligase beta subunit n=1 Tax=Desulfotomaculum carboxydivorans (strain DSM 14880 / VKM B-2319 / CO-1-SRB) RepID=F6B8E1_DESCC rbh
08E140C01_z5_2013_Ig3399_v2_scaffold_1193_11
Dehalobacter sp. CF, Dehalobacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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9642..10859
DNA (1218bp) protein (406aa)
Uncharacterized protein n=3 Tax=Dehalobacter RepID=K4KTX3_9FIRM rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:AFV05507.1}; TaxID=1131462 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Dehalobacter.;" source="Dehalobacter sp. CF.;"
08E140C01_z5_2013_Ig3399_v2_scaffold_1193_12
Pelotomaculum thermopropionicum, Pelotomaculum, Clostridiales, Clostridia, Firmicutes, Bacteria

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10958..11632
DNA (675bp) protein (225aa)
Predicted transcriptional regulator n=1 Tax=Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI) RepID=A5D3U0_PELTS
transcriptional regulator
Predicted transcriptional regulator {ECO:0000313|EMBL:BAF59082.1}; TaxID=370438 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Pelotomaculum.;" source="Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI).;"
08E140C01_z5_2013_Ig3399_v2_scaffold_1193_13
Peptococcaceae bacterium BRH_c4a, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11740..12438
DNA (699bp) protein (233aa)
Putative pyruvate, phosphate dikinase regulatory protein {ECO:0000256|HAMAP-Rule:MF_00921}; Short=PPDK regulatory protein {ECO:0000256|HAMAP-Rule:MF_00921};; EC=2.7.11.32 {ECO:0000256|HAMAP-Rule:MF_00921};; EC=2.7.4.27 {ECO:0000256|HAMAP-Rule:MF_00921};; TaxID=1629716 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae.;" source="Peptococcaceae bacterium BRH_c4a.;"
phosphotransferase n=1 Tax=Desulfurispora thermophila RepID=UPI00035C2FDF rbh
hypothetical protein; K09773 hypothetical protein rbh
08E140C01_z5_2013_Ig3399_v2_scaffold_1193_14
Desulfotomaculum gibsoniae, Desulfotomaculum, Clostridiales, Clostridia, Firmicutes, Bacteria

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12438..15095
DNA (2658bp) protein (886aa)
Pyruvate, phosphate dikinase n=1 Tax=Desulfotomaculum gibsoniae DSM 7213 RepID=R4KCG2_9FIRM rbh
pyruvate, phosphate dikinase rbh
Pyruvate, phosphate dikinase {ECO:0000313|EMBL:AGL00873.1}; TaxID=767817 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Desulfotomaculum.;" source="Desulfotomaculum gibsoniae DSM 7213.;"
08E140C01_z5_2013_Ig3399_v2_scaffold_1193_15
Syntrophomonas wolfei, Syntrophomonas, Clostridiales, Clostridia, Firmicutes, Bacteria

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15292..15498
DNA (207bp) protein (69aa)
Putative uncharacterized protein n=1 Tax=Syntrophomonas wolfei subsp. wolfei (strain DSM 2245B / Goettingen) RepID=Q0AXZ2_SYNWW
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABI68412.1}; TaxID=335541 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Syntrophomonadaceae; Syntrophomonas.;" source="Syntrophomonas wolfei subsp. wolfei (strain DSM 2245B / Goettingen).;"
08E140C01_z5_2013_Ig3399_v2_scaffold_1193_16
Syntrophomonas wolfei, Syntrophomonas, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15530..15751
DNA (222bp) protein (74aa)
Putative uncharacterized protein n=1 Tax=Syntrophomonas wolfei subsp. wolfei (strain DSM 2245B / Goettingen) RepID=Q0AXZ1_SYNWW
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABI68413.1}; TaxID=335541 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Syntrophomonadaceae; Syntrophomonas.;" source="Syntrophomonas wolfei subsp. wolfei (strain DSM 2245B / Goettingen).;"
08E140C01_z5_2013_Ig3399_v2_scaffold_1193_17
Desulfotomaculum reducens, Desulfotomaculum, Clostridiales, Clostridia, Firmicutes, Bacteria

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15799..16617
DNA (819bp) protein (273aa)
4Fe-4S ferredoxin, iron-sulfur binding domain protein n=1 Tax=Desulfotomaculum reducens (strain MI-1) RepID=A4J6N8_DESRM rbh
4Fe-4S ferredoxin rbh
4Fe-4S ferredoxin, iron-sulfur binding domain protein {ECO:0000313|EMBL:ABO50741.1}; TaxID=349161 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Desulfotomaculum.;" source="Desulfotomaculum reducens (strain MI-1).;"
08E140C01_z5_2013_Ig3399_v2_scaffold_1193_18
Saccharicrinis fermentans, Saccharicrinis, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(16702..17925)
DNA (1224bp) protein (408aa)
Tryptophan synthase beta chain {ECO:0000256|HAMAP-Rule:MF_00133}; EC=4.2.1.20 {ECO:0000256|HAMAP-Rule:MF_00133};; TaxID=869213 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Marinilabiliaceae; Saccharicrinis.;" source="Saccharicrinis fermentans DSM 9555 = JCM 21142.;"
tryptophan synthase subunit beta (EC:4.2.1.20); K06001 tryptophan synthase beta chain [EC:4.2.1.20] rbh
Tryptophan synthase beta chain n=1 Tax=Bermanella marisrubri RepID=Q1N0H3_9GAMM rbh
08E140C01_z5_2013_Ig3399_v2_scaffold_1193_19
Desulfobacula toluolica, Desulfobacula, Desulfobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17928..18197)
DNA (270bp) protein (90aa)
TrpR: predicted repressor protein n=1 Tax=Desulfobacula toluolica (strain DSM 7467 / Tol2) RepID=K0NJZ4_DESTT
trpR; repressor protein TrpR
TrpR: predicted repressor protein {ECO:0000313|EMBL:CCK81170.1}; TaxID=651182 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfobacterales; Desulfobacteraceae; Desulfobacula.;" source="Desulfobacula toluolica (strain DSM 7467 / Tol2).;"
08E140C01_z5_2013_Ig3399_v2_scaffold_1193_20
Syntrophaceticus schinkii, Syntrophaceticus, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

18473..19069
DNA (597bp) protein (199aa)
NADPH-dependent FMN reductase n=1 Tax=Syntrophomonas wolfei subsp. wolfei (strain DSM 2245B / Goettingen) RepID=Q0AWU1_SYNWW
Uncharacterized protein {ECO:0000313|EMBL:CEO87573.1}; TaxID=499207 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacterales Family III. Incertae Sedis; Syntrophaceticus.;" source="Syntrophaceticus schinkii.;"
NADPH-dependent FMN reductase
08E140C01_z5_2013_Ig3399_v2_scaffold_1193_21
Clostridiaceae bacterium BRH_c20a, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19080..20111
DNA (1032bp) protein (344aa)
deoxyguanosinetriphosphate triphosphohydrolase; K01129 dGTPase [EC:3.1.5.1] rbh
Deoxyguanosinetriphosphate triphosphohydrolase n=1 Tax=Syntrophothermus lipocalidus (strain DSM 12680 / TGB-C1) RepID=D7CNU6_SYNLT rbh
Deoxyguanosinetriphosphate triphosphohydrolase-like protein {ECO:0000256|HAMAP-Rule:MF_01212}; TaxID=1629719 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae.;" source="Clostridiaceae bacterium BRH_c20a.;"
08E140C01_z5_2013_Ig3399_v2_scaffold_1193_22
Clostridiaceae bacterium BRH_c20a, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20264..22117
DNA (1854bp) protein (618aa)
DNA primase {ECO:0000256|HAMAP-Rule:MF_00974, ECO:0000256|PIRNR:PIRNR002811}; EC=2.7.7.- {ECO:0000256|HAMAP-Rule:MF_00974, ECO:0000256|PIRNR:PIRNR002811};; TaxID=1629719 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae.;" source="Clostridiaceae bacterium BRH_c20a.;"
DNA primase; K02316 DNA primase [EC:2.7.7.-] rbh
DNA primase n=1 Tax=Desulforudis audaxviator (strain MP104C) RepID=B1I1U0_DESAP rbh
08E140C01_z5_2013_Ig3399_v2_scaffold_1193_23
Desulfitobacterium hafniense, Desulfitobacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22114..23241
DNA (1128bp) protein (376aa)
RNA polymerase sigma factor SigA n=2 Tax=Desulfitobacterium hafniense RepID=B8FTY1_DESHD rbh
RNA polymerase sigma factor RpoD; K03086 RNA polymerase primary sigma factor rbh
RNA polymerase sigma factor SigA {ECO:0000256|HAMAP-Rule:MF_00963}; TaxID=537010 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Desulfitobacterium.;" source="Desulfitobacterium hafniense DP7.;"
08E140C01_z5_2013_Ig3399_v2_scaffold_1193_trna_1
unknown

Not on your lists

23316..23387
DNA (72bp)
transferRNA
08E140C01_z5_2013_Ig3399_v2_scaffold_1193_trna_2
unknown

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23392..23464
DNA (73bp)
transferRNA
08E140C01_z5_2013_Ig3399_v2_scaffold_1193_24
Desulfotomaculum carboxydivorans, Desulfotomaculum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23601..24308
DNA (708bp) protein (236aa)
hypothetical protein; K06967 tRNA (adenine22-N1)-methyltransferase [EC:2.1.1.217]
Uncharacterized protein n=2 Tax=Desulfotomaculum RepID=F0DNJ2_9FIRM
Putative uncharacterized protein {ECO:0000313|EMBL:AEF94695.1}; TaxID=868595 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Desulfotomaculum.;" source="Desulfotomaculum carboxydivorans (strain DSM 14880 / VKM B-2319 /; CO-1-SRB).;"
08E140C01_z5_2013_Ig3399_v2_scaffold_1193_25
Thermincola potens, Thermincola, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24284..25399
DNA (1116bp) protein (372aa)
Putative GTP cyclohydrolase 1 type 2 {ECO:0000256|RuleBase:RU004385}; EC=3.5.4.16 {ECO:0000256|RuleBase:RU004385};; GTP cyclohydrolase I {ECO:0000256|RuleBase:RU004385}; TaxID=635013 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Thermincola.;" source="Thermincola potens (strain JR).;"
Putative GTP cyclohydrolase 1 type 2 n=1 Tax=Thermincola potens (strain JR) RepID=D5XA07_THEPJ rbh
hypothetical protein rbh
08E140C01_z5_2013_Ig3399_v2_scaffold_1193_26
Clostridiaceae bacterium BRH_c20a, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25488..26210
DNA (723bp) protein (241aa)
Uncharacterized protein n=1 Tax=Clostridiaceae bacterium L21-TH-D2 RepID=R1AXX4_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:KJS22659.1}; TaxID=1629719 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae.;" source="Clostridiaceae bacterium BRH_c20a.;"
hypothetical protein; K07164
08E140C01_z5_2013_Ig3399_v2_scaffold_1193_27
Moorella glycerini, Moorella, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

26222..27628
DNA (1407bp) protein (469aa)
aminotransferase (EC:2.6.1.-); K09251 putrescine aminotransferase [EC:2.6.1.82] rbh
Aminotransferase n=1 Tax=Moorella thermoacetica (strain ATCC 39073) RepID=Q2RHK3_MOOTA rbh
Genome assembly strain_NMP_1 {ECO:0000313|EMBL:CEP66477.1}; TaxID=55779 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Moorella group; Moorella.;" source="Moorella glycerini.;"
08E140C01_z5_2013_Ig3399_v2_scaffold_1193_28
Geobacillus stearothermophilus, Geobacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

28333..29397
DNA (1065bp) protein (355aa)
Cobalamin biosynthesis protein CbiM n=1 Tax=Bacillus methanolicus MGA3 RepID=I3E345_BACMT rbh
Cobalamin (Vitamin B12) biosynthesis CbiM protein {ECO:0000313|EMBL:EZP78507.1}; TaxID=1295642 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Geobacillus.;" source="Geobacillus stearothermophilus NUB3621.;"
cobalamin (vitamin B12) biosynthesis CbiM protein; K02007 cobalt/nickel transport system permease protein rbh
Displaying items 1-30 of 33 in total

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