ggKbase home page

08E140C01_z5_2013_Ig3399_v2_scaffold_1460

Search features with annotation key words

Displaying 26 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
08E140C01_z5_2013_Ig3399_v2_scaffold_1460_1
BJP_IG2102_Clostridiales_34_350, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3..1415)
DNA (1413bp) protein (471aa)
Multi-sensor hybrid histidine kinase n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T6G2_PALPW
multi-sensor hybrid histidine kinase
Tax=BJP_IG2102_Clostridiales_34_350
08E140C01_z5_2013_Ig3399_v2_scaffold_1460_2
BJP_IG2102_Clostridiales_34_350, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1421..2251)
DNA (831bp) protein (277aa)
chemotaxis protein CheR; K13924 two-component system, chemotaxis family, CheB/CheR fusion protein [EC:2.1.1.80 3.1.1.61]
MCP methyltransferase, CheR-type n=1 Tax=Acetobacterium woodii (strain ATCC 29683 / DSM 1030 / JCM 2381 / KCTC 1655) RepID=H6LJ20_ACEWD
Tax=BJP_IG2102_Clostridiales_34_350
08E140C01_z5_2013_Ig3399_v2_scaffold_1460_3
unknown

Not on your lists

comp(2306..2440)
DNA (135bp) protein (45aa)

This feature has no annotations

08E140C01_z5_2013_Ig3399_v2_scaffold_1460_4
unknown

Not on your lists

comp(2572..2757)
DNA (186bp) protein (62aa)

This feature has no annotations

08E140C01_z5_2013_Ig3399_v2_scaffold_1460_5
Thermincola potens, Thermincola, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2974..3345)
DNA (372bp) protein (124aa)
FeS cluster assembly scaffold protein NifU n=1 Tax=Thermincola potens (strain JR) RepID=D5X841_THEPJ
FeS cluster assembly scaffold protein NifU; K04488 nitrogen fixation protein NifU and related proteins
FeS cluster assembly scaffold protein NifU {ECO:0000313|EMBL:ADG82761.1}; TaxID=635013 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Thermincola.;" source="Thermincola potens (strain JR).;"
08E140C01_z5_2013_Ig3399_v2_scaffold_1460_6
Desulfosporosinus acidiphilus, Desulfosporosinus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3327..4523)
DNA (1197bp) protein (399aa)
Cysteine desulfurase IscS {ECO:0000256|HAMAP-Rule:MF_00331, ECO:0000256|SAAS:SAAS00038344}; EC=2.8.1.7 {ECO:0000256|HAMAP-Rule:MF_00331, ECO:0000256|SAAS:SAAS00063383};; TaxID=646529 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Desulfosporosinus.;" source="Desulfosporosinus acidiphilus (strain DSM 22704 / JCM 16185 / SJ4).;"
Cysteine desulfurase n=1 Tax=Desulfosporosinus acidiphilus (strain DSM 22704 / JCM 16185 / SJ4) RepID=I4D975_DESAJ rbh
cysteine desulfurase NifS rbh
08E140C01_z5_2013_Ig3399_v2_scaffold_1460_7
Dehalobacter sp. CF, Dehalobacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4770..5327)
DNA (558bp) protein (186aa)
Ferredoxin n=2 Tax=Dehalobacter RepID=K4KPR5_9FIRM
Ferredoxin
Ferredoxin {ECO:0000313|EMBL:AFV04213.1}; TaxID=1131462 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Dehalobacter.;" source="Dehalobacter sp. CF.;"
08E140C01_z5_2013_Ig3399_v2_scaffold_1460_8
Heliobacterium modesticaldum, Heliobacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5398..5967)
DNA (570bp) protein (190aa)
RNA polymerase sigma factor n=1 Tax=Heliobacterium modesticaldum (strain ATCC 51547 / Ice1) RepID=B0TCH4_HELMI
rpoE; RNA polymerase sigma factor SigZ; K03088 RNA polymerase sigma-70 factor, ECF subfamily
RNA polymerase sigma factor {ECO:0000313|EMBL:ABZ85362.1}; TaxID=498761 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Heliobacteriaceae; Heliobacterium.;" source="Heliobacterium modesticaldum (strain ATCC 51547 / Ice1).;"
08E140C01_z5_2013_Ig3399_v2_scaffold_1460_9
Dehalobacter sp. CF, Dehalobacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6083..6523
DNA (441bp) protein (147aa)
Uncharacterized protein n=2 Tax=Dehalobacter RepID=K4KPQ1_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFV04193.1}; TaxID=1131462 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Dehalobacter.;" source="Dehalobacter sp. CF.;"
08E140C01_z5_2013_Ig3399_v2_scaffold_1460_10
Moorella glycerini, Moorella, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6687..8183)
DNA (1497bp) protein (499aa)
Copper amine oxidase domain protein n=1 Tax=Geobacillus sp. (strain Y412MC10) RepID=D3EK02_GEOS4
Genome assembly strain_NMP_1 {ECO:0000313|EMBL:CEP67191.1}; TaxID=55779 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Moorella group; Moorella.;" source="Moorella glycerini.;"
copper amine oxidase domain-containing protein
08E140C01_z5_2013_Ig3399_v2_scaffold_1460_11
Oscillibacter valericigenes, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8396..10348)
DNA (1953bp) protein (651aa)
fadH; 2,4-dienoyl-CoA reductase (EC:1.3.1.34) rbh
2,4-dienoyl-CoA reductase {ECO:0000313|EMBL:BAL00533.1}; EC=1.3.1.34 {ECO:0000313|EMBL:BAL00533.1};; TaxID=693746 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter.;" source="Oscillibacter valericigenes (strain DSM 18026 / NBRC 101213 /; Sjm18-20).;"
2,4-dienoyl-CoA reductase n=1 Tax=Oscillibacter valericigenes (strain DSM 18026 / NBRC 101213 / Sjm18-20) RepID=G4KUU0_OSCVS rbh
08E140C01_z5_2013_Ig3399_v2_scaffold_1460_12
Clostridium argentinense, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10484..10810
DNA (327bp) protein (109aa)
Transcriptional regulator, HxlR family n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HRN2_9FIRM
HxlR-like helix-turn-helix family protein {ECO:0000313|EMBL:KIE46000.1}; TaxID=1418104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium argentinense CDC 2741.;"
transcriptional regulator
08E140C01_z5_2013_Ig3399_v2_scaffold_1460_13
Peptococcaceae bacterium BRH_c8a, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10894..11145)
DNA (252bp) protein (84aa)
Calcium-translocating P-type ATPase, PMCA-type n=1 Tax=Enterococcus asini ATCC 700915 RepID=R2SG21_9ENTE
ATPase {ECO:0000313|EMBL:KJS11701.1}; TaxID=1629715 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae.;" source="Peptococcaceae bacterium BRH_c8a.;"
08E140C01_z5_2013_Ig3399_v2_scaffold_1460_14
CG_OP9-01, Atribacteria, Bacteria

Not on your lists

comp(11488..12003)
DNA (516bp) protein (172aa)
hypothetical protein n=1 Tax=Atribacteria bacterium SCGC AAA252-M02 RepID=UPI00037C39B8
hypothetical protein Tax=CG_OP9-01
signal transduction histidine kinase LytS
08E140C01_z5_2013_Ig3399_v2_scaffold_1460_15
Dorea sp. CAG:317, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12085..12954)
DNA (870bp) protein (290aa)
bifunctional protein folD (EC:1.5.1.5); K01491 methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9] rbh
Bifunctional protein FolD n=1 Tax=Dorea sp. CAG:317 RepID=R6XNQ7_9FIRM rbh
Bifunctional protein FolD {ECO:0000256|HAMAP-Rule:MF_01576}; TaxID=1262873 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea sp. CAG:317.;"
08E140C01_z5_2013_Ig3399_v2_scaffold_1460_16
[Clostridium] bolteae, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13042..13668)
DNA (627bp) protein (209aa)
fchA; methenyltetrahydrofolate cyclohydrolase (EC:3.5.4.9)
Methenyltetrahydrofolate cyclohydrolase n=3 Tax=Clostridium bolteae RepID=R0AHJ7_9CLOT
Methenyltetrahydrofolate cyclohydrolase {ECO:0000313|EMBL:ENZ31617.1}; TaxID=997897 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] bolteae 90B8.;"
08E140C01_z5_2013_Ig3399_v2_scaffold_1460_17
Dehalobacter restrictus, Dehalobacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13840..15519)
DNA (1680bp) protein (560aa)
Formate--tetrahydrofolate ligase (EC:6.3.4.3) rbh
Formate--tetrahydrofolate ligase {ECO:0000256|HAMAP-Rule:MF_01543}; EC=6.3.4.3 {ECO:0000256|HAMAP-Rule:MF_01543};; Formyltetrahydrofolate synthetase {ECO:0000256|HAMAP-Rule:MF_01543}; TaxID=871738 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Dehalobacter.;" source="Dehalobacter restrictus DSM 9455.;"
formate--tetrahydrofolate ligase n=1 Tax=Dehalobacter sp. E1 RepID=UPI00031E8A74 rbh
08E140C01_z5_2013_Ig3399_v2_scaffold_1460_18
Dehalobacter restrictus, Dehalobacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15544..16404)
DNA (861bp) protein (287aa)
bidirectional formate transporter n=1 Tax=Dehalobacter sp. E1 RepID=UPI00037E8523 rbh
Bidirectional formate transporter {ECO:0000313|EMBL:AHF08845.1}; TaxID=871738 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Dehalobacter.;" source="Dehalobacter restrictus DSM 9455.;"
formate/nitrite transporter rbh
08E140C01_z5_2013_Ig3399_v2_scaffold_1460_19
Carboxydothermus hydrogenoformans, Carboxydothermus, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16741..17811)
DNA (1071bp) protein (357aa)
mhpE; 4-hydroxy-2-ketovalerate aldolase (EC:4.1.3.-); K01666 4-hydroxy 2-oxovalerate aldolase [EC:4.1.3.39] rbh
4-hydroxy-2-oxovalerate aldolase {ECO:0000255|HAMAP-Rule:MF_01656}; Short=HOA {ECO:0000255|HAMAP-Rule:MF_01656};; EC=4.1.3.39 {ECO:0000255|HAMAP-Rule:MF_01656};; 4-hydroxy-2-keto-pentanoic acid aldolase {ECO:0000255|HAMAP-Rule:MF_01656}; 4-hydroxy-2-oxopentanoate aldolase {ECO:0000255|HAMAP-Rule:MF_01656}; TaxID=246194 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Carboxydothermus.;" source="Carboxydothermus hydrogenoformans (strain ATCC BAA-161 / DSM 6008 /; Z-
4-hydroxy-2-oxovalerate aldolase n=1 Tax=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) RepID=HOA_CARHZ rbh
08E140C01_z5_2013_Ig3399_v2_scaffold_1460_20
Moorella thermoacetica, Moorella, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17783..18655)
DNA (873bp) protein (291aa)
acetaldehyde dehydrogenase (EC:1.2.1.10); K04073 acetaldehyde dehydrogenase [EC:1.2.1.10]
Acetaldehyde dehydrogenase {ECO:0000255|HAMAP-Rule:MF_01657}; EC=1.2.1.10 {ECO:0000255|HAMAP-Rule:MF_01657};; Acetaldehyde dehydrogenase [acetylating] {ECO:0000255|HAMAP-Rule:MF_01657}; TaxID=264732 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Moorella group; Moorella.;" source="Moorella thermoacetica (strain ATCC 39073).;"
Acetaldehyde dehydrogenase n=1 Tax=Moorella thermoacetica (strain ATCC 39073) RepID=ACDH_MOOTA
08E140C01_z5_2013_Ig3399_v2_scaffold_1460_21
Clostridium pasteurianum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18785..19813)
DNA (1029bp) protein (343aa)
Putative oxidoreductase of aldo/keto reductase family n=1 Tax=Clostridium pasteurianum BC1 RepID=R4K902_CLOPA rbh
putative oxidoreductase of aldo/keto reductase family rbh
Putative oxidoreductase of aldo/keto reductase family {ECO:0000313|EMBL:AGK96999.1}; TaxID=86416 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium pasteurianum BC1.;"
08E140C01_z5_2013_Ig3399_v2_scaffold_1460_22
Desulfotomaculum gibsoniae, Desulfotomaculum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19870..20727)
DNA (858bp) protein (286aa)
3-methyl-2-oxobutanoate hydroxymethyltransferase {ECO:0000256|HAMAP-Rule:MF_00156, ECO:0000256|SAAS:SAAS00094725}; EC=2.1.2.11 {ECO:0000256|HAMAP-Rule:MF_00156, ECO:0000256|SAAS:SAAS00094725};; Ketopantoate hydroxymethyltransferase {ECO:0000256|HAMAP-Rule:MF_00156}; TaxID=767817 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Desulfotomaculum.;" source="Desulfotomaculum gibsoniae DSM 7213.;"
3-methyl-2-oxobutanoate hydroxymethyltransferase n=1 Tax=Desulfotomaculum gibsoniae DSM 7213 RepID=R4KP81_9FIRM rbh
3-methyl-2-oxobutanoate hydroxymethyltransferase rbh
08E140C01_z5_2013_Ig3399_v2_scaffold_1460_23
Desulfarculus sp. SPR, Desulfarculus, Desulfarculales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20775..21629)
DNA (855bp) protein (285aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XDX7_9FIRM
Contig_19, whole genome shotgun sequence {ECO:0000313|EMBL:KIX14214.1}; TaxID=1429043 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfarculales; Desulfarculaceae; Desulfarculus.;" source="Desulfarculus sp. SPR.;"
hypothetical protein
08E140C01_z5_2013_Ig3399_v2_scaffold_1460_24

Not on your lists

comp(21672..22175)
DNA (504bp) protein (168aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K1YV19_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EKD41021.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
08E140C01_z5_2013_Ig3399_v2_scaffold_1460_25
RBG_13_Deltaproteobacteria_53_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22316..23350)
DNA (1035bp) protein (345aa)
Tricarboxylate transport protein TctC n=1 Tax=Achromobacter xylosoxidans NH44784-1996 RepID=R4XPS7_ALCXX
hypothetical protein Tax=RBG_13_Deltaproteobacteria_53_10_curated
Tricarboxylate transport protein TctC
08E140C01_z5_2013_Ig3399_v2_scaffold_1460_26

Not on your lists

comp(23474..24970)
DNA (1497bp) protein (499aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K1YDS9_9BACT rbh
Uncharacterized protein {ECO:0000313|EMBL:EKD41020.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
hypothetical protein; K07793 putative tricarboxylic transport membrane protein
Displaying 26 items

View Taxonomy