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08E140C01_z5_2013_Ig3399_v2_scaffold_5740

Search features with annotation key words

Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
08E140C01_z5_2013_Ig3399_v2_scaffold_5740_1
Clostridium kluyveri, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2..622)
DNA (621bp) protein (207aa)
Uncharacterized protein n=2 Tax=Clostridium kluyveri RepID=B9E3M3_CLOK1
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAH07098.1}; TaxID=583346 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium kluyveri (strain NBRC 12016).;"
08E140C01_z5_2013_Ig3399_v2_scaffold_5740_2
Methanosarcina horonobensis, Methanosarcina, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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comp(643..1269)
DNA (627bp) protein (209aa)
Transcriptional regulator, TetR family n=1 Tax=Alkaliphilus metalliredigens (strain QYMF) RepID=A6TNC8_ALKMQ
Transcriptional regulator, TetR family {ECO:0000313|EMBL:AKB76830.1}; TaxID=1434110 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina.;" source="Methanosarcina horonobensis HB-1 = JCM 15518.;"
TetR family transcriptional regulator
08E140C01_z5_2013_Ig3399_v2_scaffold_5740_3
Clostridium sp. CAG:62, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1868..3853)
DNA (1986bp) protein (662aa)
Clostripain family protein n=1 Tax=Clostridium sp. CAG:62 RepID=R7C5Q4_9CLOT rbh
Clostripain family protein {ECO:0000313|EMBL:CDD73479.1}; TaxID=1262828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:62.;"
putative peptidase C11 family protein rbh
08E140C01_z5_2013_Ig3399_v2_scaffold_5740_4
unknown

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comp(3941..4372)
DNA (432bp) protein (144aa)

This feature has no annotations

08E140C01_z5_2013_Ig3399_v2_scaffold_5740_5
Peptococcaceae bacterium BRH_c4a, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(4720..4935)
DNA (216bp) protein (72aa)
Prevent-host-death family protein n=1 Tax=Clostridium butyricum 60E.3 RepID=N9ZY24_CLOBU
Prevent-host-death protein {ECO:0000313|EMBL:KJS01380.1}; TaxID=1629716 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae.;" source="Peptococcaceae bacterium BRH_c4a.;"
Phd_YefM
08E140C01_z5_2013_Ig3399_v2_scaffold_5740_6
Clostridium pasteurianum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(5136..5456)
DNA (321bp) protein (107aa)
Cation transporter n=1 Tax=Clostridium pasteurianum NRRL B-598 RepID=V8FNC8_CLOPA
cation diffusion facilitator family transporter
Cation transporter {ECO:0000313|EMBL:ETD65789.1}; TaxID=1428454 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium pasteurianum NRRL B-598.;"
08E140C01_z5_2013_Ig3399_v2_scaffold_5740_7
Clostridium intestinale, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(6139..6831)
DNA (693bp) protein (231aa)
ketopantoate reductase; K00077 2-dehydropantoate 2-reductase [EC:1.1.1.169]
Ketopantoate reductase n=1 Tax=Clostridium intestinale URNW RepID=U2NR76_9CLOT
Ketopantoate reductase {ECO:0000313|EMBL:ERK31673.1}; TaxID=1294142 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium intestinale URNW.;"
08E140C01_z5_2013_Ig3399_v2_scaffold_5740_8
Wolinella succinogenes, Wolinella, Campylobacterales, Epsilonproteobacteria, Proteobacteria, Bacteria

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comp(6934..7167)
DNA (234bp) protein (78aa)
hydrogenase assembly protein HupF n=1 Tax=Marinimicrobia bacterium JGI 0000039-D08 RepID=UPI0003A2F9AE
HYPE; hydrogenase expression/formation protein; K04655 hydrogenase expression/formation protein HypE
HYDROGENASE EXPRESSION/FORMATION PROTEIN {ECO:0000313|EMBL:CAE09908.1}; TaxID=273121 species="Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; Helicobacteraceae; Wolinella.;" source="Wolinella succinogenes (strain ATCC 29543 / DSM 1740 / LMG 7466 / NCTC; 11488 / FDC 602W) (Vibrio succinogenes).;"
08E140C01_z5_2013_Ig3399_v2_scaffold_5740_9
Sporomusa ovata, Sporomusa, Selenomonadales, Negativicutes, Firmicutes, Bacteria

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7222..7827
DNA (606bp) protein (202aa)
Periplasmic [NiFeSe] hydrogenase large subunit {ECO:0000313|EMBL:EQB25819.1}; EC=1.12.99.6 {ECO:0000313|EMBL:EQB25819.1};; TaxID=1123288 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Sporomusa.;" source="Sporomusa ovata DSM 2662.;"
hypothetical protein n=1 Tax=euryarchaeote SCGC AAA261-G15 RepID=UPI00035F4914
Ni,Fe-hydrogenase I large subunit
08E140C01_z5_2013_Ig3399_v2_scaffold_5740_10
BJP_08E140C01_Clostridiales_46_19, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(7773..8252)
DNA (480bp) protein (160aa)
Tax=BJP_08E140C01_Clostridiales_46_19
08E140C01_z5_2013_Ig3399_v2_scaffold_5740_11
Clostridia bacterium enrichment culture clone BF, Clostridia, Firmicutes, Bacteria

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comp(8474..9421)
DNA (948bp) protein (316aa)
Putative benzylsuccinate synthase BssD (Fragment) n=1 Tax=Clostridia bacterium enrichment culture clone BF RepID=D8WWC8_9FIRM rbh
Putative benzylsuccinate synthase BssD {ECO:0000313|EMBL:ADJ93882.1}; Flags: Fragment;; TaxID=857391 species="Bacteria; Firmicutes; Clostridia; environmental samples.;" source="Clostridia bacterium enrichment culture clone BF.;"
glycyl-radical enzyme activator family protein rbh
08E140C01_z5_2013_Ig3399_v2_scaffold_5740_12
Desulfotomaculum gibsoniae, Desulfotomaculum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(9439..11133)
DNA (1695bp) protein (565aa)
Mg-chelatase subunit ChlD n=1 Tax=Desulfotomaculum gibsoniae DSM 7213 RepID=R4KEX0_9FIRM rbh
Mg-chelatase subunit ChlD rbh
Mg-chelatase subunit ChlD {ECO:0000313|EMBL:AGL00217.1}; TaxID=767817 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Desulfotomaculum.;" source="Desulfotomaculum gibsoniae DSM 7213.;"
08E140C01_z5_2013_Ig3399_v2_scaffold_5740_13
Clostridia bacterium enrichment culture clone BF, Clostridia, Firmicutes, Bacteria

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comp(11165..12022)
DNA (858bp) protein (286aa)
Putative benzylsuccinate synthase BssE (Fragment) n=1 Tax=Clostridia bacterium enrichment culture clone BF RepID=D8WWC4_9FIRM rbh
Putative benzylsuccinate synthase BssE {ECO:0000313|EMBL:ADJ93878.1}; Flags: Fragment;; TaxID=857391 species="Bacteria; Firmicutes; Clostridia; environmental samples.;" source="Clostridia bacterium enrichment culture clone BF.;"
ATPase family protein associated with various cellular activities (AAA) rbh
08E140C01_z5_2013_Ig3399_v2_scaffold_5740_14
Clostridia bacterium enrichment culture clone BF, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12118..12417)
DNA (300bp) protein (100aa)
Putative benzylsuccinate synthase BssB (Fragment) n=1 Tax=Clostridia bacterium enrichment culture clone BF RepID=D8WWC3_9FIRM
Putative benzylsuccinate synthase BssB {ECO:0000313|EMBL:ADJ93877.1}; Flags: Fragment;; TaxID=857391 species="Bacteria; Firmicutes; Clostridia; environmental samples.;" source="Clostridia bacterium enrichment culture clone BF.;"
hypothetical protein
08E140C01_z5_2013_Ig3399_v2_scaffold_5740_15
Clostridia bacterium enrichment culture clone BF, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12431..12847)
DNA (417bp) protein (139aa)
Putative benzylsuccinate synthase BssA (Fragment) n=1 Tax=Clostridia bacterium enrichment culture clone BF RepID=D8WWC2_9FIRM
Putative benzylsuccinate synthase BssA {ECO:0000313|EMBL:ADJ93876.1}; Flags: Fragment;; TaxID=857391 species="Bacteria; Firmicutes; Clostridia; environmental samples.;" source="Clostridia bacterium enrichment culture clone BF.;"
pyruvate-formate lyase
Displaying 15 items

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