ggKbase home page

08E140C01_z5_2013_Ig3399_v2_scaffold_2373

Search features with annotation key words

Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
08E140C01_z5_2013_Ig3399_v2_scaffold_2373_1
Desulfotomaculum gibsoniae, Desulfotomaculum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2..571)
DNA (570bp) protein (190aa)
Putative DNA alkylation repair enzyme n=1 Tax=Desulfotomaculum gibsoniae DSM 7213 RepID=R4KS94_9FIRM rbh
putative DNA alkylation repair enzyme rbh
Putative DNA alkylation repair enzyme {ECO:0000313|EMBL:AGL02471.1}; TaxID=767817 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Desulfotomaculum.;" source="Desulfotomaculum gibsoniae DSM 7213.;"
08E140C01_z5_2013_Ig3399_v2_scaffold_2373_2
Clostridium ultunense, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(887..1105)
DNA (219bp) protein (73aa)
Transcriptional modulator of MazE/toxin, MazF {ECO:0000313|EMBL:CCQ93814.1}; TaxID=1288971 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium ultunense Esp.;"
08E140C01_z5_2013_Ig3399_v2_scaffold_2373_3
CG_Elusi_05, Elusimicrobia, Bacteria

Not on your lists

comp(1188..1649)
DNA (462bp) protein (154aa)
hypothetical protein Tax=CG_Elusi_05
hypothetical protein TpriZ_08750 id=3327243 bin=GWC1_Spirochaetes_27_15 species=Treponema primitia genus=Treponema taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWC1_Spirochaetes_27_15 organism_group=Spirochaetes
hypothetical protein
08E140C01_z5_2013_Ig3399_v2_scaffold_2373_4
RBG_13_RIF03_48_7_curated, RIF3, Bacteria

Not on your lists

comp(1639..1941)
DNA (303bp) protein (101aa)
putative nucleotidyltransferase Tax=RBG_13_RIF03_48_7_curated
putative nucleotidyltransferase
Putative nucleotidyltransferase id=3327244 bin=GWC1_Spirochaetes_27_15 species=Spirochaeta africana genus=Spirochaeta taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWC1_Spirochaetes_27_15 organism_group=Spirochaetes
08E140C01_z5_2013_Ig3399_v2_scaffold_2373_5
Acetobacterium woodii, Acetobacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2226..3767)
DNA (1542bp) protein (514aa)
Diguanylate cyclase containing PAS/PAC sensor {ECO:0000313|EMBL:AFA50037.1}; EC=2.7.7.65 {ECO:0000313|EMBL:AFA50037.1};; TaxID=931626 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Acetobacterium.;" source="Acetobacterium woodii (strain ATCC 29683 / DSM 1030 / JCM 2381 / KCTC; 1655).;"
Diguanylate cyclase containing PAS/PAC sensor n=1 Tax=Acetobacterium woodii (strain ATCC 29683 / DSM 1030 / JCM 2381 / KCTC 1655) RepID=H6LKS8_ACEWD
diguanylate cyclase containing PAS/PAC sensor
08E140C01_z5_2013_Ig3399_v2_scaffold_2373_6
Coprobacillus sp. CAG:235, Coprobacillus, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(3997..6030)
DNA (2034bp) protein (678aa)
2-enoate reductase n=1 Tax=Coprobacillus sp. CAG:235 RepID=R5QV91_9FIRM rbh
2-enoate reductase {ECO:0000313|EMBL:CCZ24952.1}; TaxID=1262854 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Coprobacillus; environmental samples.;" source="Coprobacillus sp. CAG:235.;"
enr2; 2-enoate reductase Enr2 rbh
08E140C01_z5_2013_Ig3399_v2_scaffold_2373_7
Clostridium carboxidivorans, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6134..6703)
DNA (570bp) protein (190aa)
Transcriptional regulator, TetR family n=1 Tax=Clostridium carboxidivorans P7 RepID=C6PRZ0_9CLOT
Transcriptional regulator, TetR family {ECO:0000313|EMBL:EET88042.1}; TaxID=536227 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium carboxidivorans P7.;"
transcriptional regulator, TetR family
08E140C01_z5_2013_Ig3399_v2_scaffold_2373_8
Desulfotomaculum ruminis, Desulfotomaculum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6924..7184)
DNA (261bp) protein (87aa)
Spore coat peptide assembly protein cotJB n=1 Tax=Desulfotomaculum ruminis (strain ATCC 23193 / DSM 2154 / NCIB 8452 / DL) RepID=F6DTZ1_DESRL
spore coat peptide assembly protein cotJB; K06333 spore coat protein JB
Spore coat peptide assembly protein cotJB {ECO:0000313|EMBL:AEG59009.1}; TaxID=696281 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Desulfotomaculum.;" source="Desulfotomaculum ruminis (strain ATCC 23193 / DSM 2154 / NCIB 8452 /; DL).;"
08E140C01_z5_2013_Ig3399_v2_scaffold_2373_9
Amblyomma cajennense, Amblyomma, Ixodida, Acari, Arthropoda, Metazoa

Not on your lists

comp(7171..7752)
DNA (582bp) protein (194aa)
Uncharacterized protein (Fragment) n=1 Tax=Gorilla gorilla gorilla RepID=G3RTM8_GORGO
Uncharacterized protein {ECO:0000313|EMBL:JAC20790.1}; Flags: Fragment;; TaxID=34607 species="Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Chelicerata; Arachnida; Acari; Parasitiformes; Ixodida; Ixodoidea; Ixodidae; Amblyomminae; Amblyomma.;" source="Amblyomma cajennense (Cayenne tick).;"
hypothetical protein
08E140C01_z5_2013_Ig3399_v2_scaffold_2373_10
unknown

Not on your lists

comp(7925..8791)
DNA (867bp) protein (289aa)

This feature has no annotations

08E140C01_z5_2013_Ig3399_v2_scaffold_2373_11
Desulfotomaculum gibsoniae, Desulfotomaculum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9000..10217
DNA (1218bp) protein (406aa)
Lysine-2,3-aminomutase n=1 Tax=Desulfotomaculum gibsoniae DSM 7213 RepID=R4KNG4_9FIRM rbh
lysine-2,3-aminomutase rbh
Lysine-2,3-aminomutase {ECO:0000313|EMBL:AGL02075.1}; TaxID=767817 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Desulfotomaculum.;" source="Desulfotomaculum gibsoniae DSM 7213.;"
08E140C01_z5_2013_Ig3399_v2_scaffold_2373_12
Caldanaerobacter subterraneus, Caldanaerobacter, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10321..10773)
DNA (453bp) protein (151aa)
rnhA; ribonuclease H (EC:3.1.26.4); K03469 ribonuclease HI [EC:3.1.26.4]
Ribonuclease H {ECO:0000255|HAMAP-Rule:MF_00042}; Short=RNase H {ECO:0000255|HAMAP-Rule:MF_00042};; EC=3.1.26.4 {ECO:0000255|HAMAP-Rule:MF_00042};; TaxID=273068 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Caldanaerobacter.;" source="Caldanaerobacter subterraneus subsp. tengcongensis (strain DSM 15242 /; JCM 11007 / NBRC 100824 / MB4) (Thermoanaerobacter tengcongensis).;"
Ribonuclease H n=2 Tax=Caldanaerobacter subterraneus RepID=RNH_THETN
08E140C01_z5_2013_Ig3399_v2_scaffold_2373_13
Clostridiaceae bacterium BRH_c20a, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10804..11880)
DNA (1077bp) protein (359aa)
Uncharacterized protein n=1 Tax=Kyrpidia tusciae (strain DSM 2912 / NBRC 15312 / T2) RepID=D5WWX0_KYRT2
Uncharacterized protein {ECO:0000313|EMBL:KJS19335.1}; TaxID=1629719 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae.;" source="Clostridiaceae bacterium BRH_c20a.;"
hypothetical protein
08E140C01_z5_2013_Ig3399_v2_scaffold_2373_14
S_Thermacetogenium_phaeum_55_64, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12061..13257)
DNA (1197bp) protein (399aa)
VanW like protein n=1 Tax=Thermacetogenium phaeum (strain ATCC BAA-254 / DSM 12270 / PB) RepID=K4LIK5_THEPS
VanW like protein
VanW like protein Tax=S_Thermacetogenium_phaeum_55_64
08E140C01_z5_2013_Ig3399_v2_scaffold_2373_15
Peptococcaceae bacterium BRH_c8a, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13421..15088)
DNA (1668bp) protein (556aa)
Na/Pi-cotransporter n=1 Tax=Desulfotomaculum gibsoniae DSM 7213 RepID=R4KR48_9FIRM rbh
Sodium-dependent phosphate transporter {ECO:0000313|EMBL:KJS12556.1}; TaxID=1629715 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae.;" source="Peptococcaceae bacterium BRH_c8a.;"
Na/Pi-cotransporter rbh
08E140C01_z5_2013_Ig3399_v2_scaffold_2373_16
Clostridiaceae bacterium BRH_c20a, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15267..15839
DNA (573bp) protein (191aa)
Uncharacterized protein n=1 Tax=Desulfotomaculum gibsoniae DSM 7213 RepID=R4KDF8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:KJS21569.1}; TaxID=1629719 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae.;" source="Clostridiaceae bacterium BRH_c20a.;"
hypothetical protein
08E140C01_z5_2013_Ig3399_v2_scaffold_2373_17
Clostridiaceae bacterium BRH_c20a, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15929..16303)
DNA (375bp) protein (125aa)
Stage II sporulation protein R n=2 Tax=Thermoanaerobacter RepID=E8UTT5_THEBF
Uncharacterized protein {ECO:0000313|EMBL:KJS18843.1}; TaxID=1629719 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae.;" source="Clostridiaceae bacterium BRH_c20a.;"
hypothetical protein; K06387 stage II sporulation protein R
08E140C01_z5_2013_Ig3399_v2_scaffold_2373_18
Desulfotomaculum hydrothermale, Desulfotomaculum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16733..18292)
DNA (1560bp) protein (520aa)
Peptidoglycan-binding lysin domain protein n=1 Tax=Desulfotomaculum hydrothermale Lam5 = DSM 18033 RepID=K8DZN5_9FIRM
Peptidoglycan-binding lysin domain protein {ECO:0000313|EMBL:CCO08584.1}; TaxID=1121428 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Desulfotomaculum.;" source="Desulfotomaculum hydrothermale Lam5 = DSM 18033.;"
peptidoglycan-binding lysin domain-containing protein
08E140C01_z5_2013_Ig3399_v2_scaffold_2373_19
Clostridiaceae bacterium BRH_c20a, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18911..19804)
DNA (894bp) protein (298aa)
Uncharacterized protein n=1 Tax=Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI) RepID=A5D676_PELTS rbh
Peptidase {ECO:0000313|EMBL:KJS18812.1}; TaxID=1629719 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae.;" source="Clostridiaceae bacterium BRH_c20a.;"
hypothetical protein; K06436 spore coat assemly protein rbh
08E140C01_z5_2013_Ig3399_v2_scaffold_2373_20
Desulfosporosinus orientis, Desulfosporosinus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19920..20714
DNA (795bp) protein (265aa)
Glycosyl transferase n=1 Tax=Desulfosporosinus orientis (strain ATCC 19365 / DSM 765 / NCIMB 8382 / VKM B-1628) RepID=G7W7D5_DESOD
glycosyl transferase family protein
Glycosyl transferase {ECO:0000313|EMBL:AET65806.1}; TaxID=768706 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Desulfosporosinus.;" source="Desulfosporosinus orientis (strain ATCC 19365 / DSM 765 / NCIMB 8382 /; VKM B-1628) (Desulfotomaculum orientis).;"
08E140C01_z5_2013_Ig3399_v2_scaffold_2373_21
Clostridiaceae bacterium BRH_c20a, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20770..21387)
DNA (618bp) protein (206aa)
Cell wall hydrolase SleB n=1 Tax=Thermincola potens (strain JR) RepID=D5X978_THEPJ
Uncharacterized protein {ECO:0000313|EMBL:KJS18841.1}; TaxID=1629719 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae.;" source="Clostridiaceae bacterium BRH_c20a.;"
cell wall hydrolase SleB
08E140C01_z5_2013_Ig3399_v2_scaffold_2373_22
Pelosinus sp. UFO1, Pelosinus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists


comp(21512..22396)
DNA (885bp) protein (295aa)
Ribosomal RNA small subunit methyltransferase A {ECO:0000256|HAMAP-Rule:MF_00607, ECO:0000256|SAAS:SAAS00015019}; EC=2.1.1.182 {ECO:0000256|HAMAP-Rule:MF_00607, ECO:0000256|SAAS:SAAS00015085};; 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase {ECO:0000256|HAMAP-Rule:MF_00607}; 16S rRNA dimethyladenosine transferase {ECO:0000256|HAMAP-Rule:MF_00607}; 16S rRNA dimethylase {ECO:0000256|HAMAP-Rule:MF_00607}; S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase {ECO:0000256|HAMAP-
ksgA; dimethyladenosine transferase (EC:2.1.1.48); K02528 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182]
Ribosomal RNA small subunit methyltransferase A n=1 Tax=Pelosinus fermentans JBW45 RepID=I9DD72_9FIRM
08E140C01_z5_2013_Ig3399_v2_scaffold_2373_23
Clostridiaceae bacterium BRH_c20a, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22396..22677)
DNA (282bp) protein (94aa)
Ribonuclease M5 {ECO:0000256|HAMAP-Rule:MF_01469}; EC=3.1.26.8 {ECO:0000256|HAMAP-Rule:MF_01469};; RNase M5 {ECO:0000256|HAMAP-Rule:MF_01469}; Ribosomal RNA terminal maturase M5 {ECO:0000256|HAMAP-Rule:MF_01469}; TaxID=1629719 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae.;" source="Clostridiaceae bacterium BRH_c20a.;"
RNAse M5 (EC:3.1.26.8)
Ribonuclease M5 n=1 Tax=Desulfosporosinus meridiei (strain ATCC BAA-275 / DSM 13257 / NCIMB 13706 / S10) RepID=J7ITX5_DESMD
Displaying 23 items

View Taxonomy