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08E140C01_z5_2013_Ig3399_v2_scaffold_3564

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Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
08E140C01_z5_2013_Ig3399_v2_scaffold_3564_1
Clostridiaceae bacterium BRH_c20a, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1..363)
DNA (363bp) protein (121aa)
Stage III sporulation protein SpoAB n=1 Tax=Desulfotomaculum acetoxidans (strain ATCC 49208 / DSM 771 / VKM B-1644) RepID=C8W107_DESAS
Uncharacterized protein {ECO:0000313|EMBL:KJS22445.1}; TaxID=1629719 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae.;" source="Clostridiaceae bacterium BRH_c20a.;"
stage III sporulation protein SpoAB; K06391 stage III sporulation protein AB
08E140C01_z5_2013_Ig3399_v2_scaffold_3564_2
Clostridiaceae bacterium BRH_c20a, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(363..1409)
DNA (1047bp) protein (349aa)
AAA ATPase n=2 Tax=Thermoanaerobacter RepID=B0K9D0_THEP3 rbh
Stage III sporulation protein AA {ECO:0000313|EMBL:KJS22591.1}; TaxID=1629719 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae.;" source="Clostridiaceae bacterium BRH_c20a.;"
stage III sporulation protein AA; K06390 stage III sporulation protein AA rbh
08E140C01_z5_2013_Ig3399_v2_scaffold_3564_3
Sporomusa ovata, Sporomusa, Selenomonadales, Negativicutes, Firmicutes, Bacteria

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1821..2312
DNA (492bp) protein (164aa)
NADP-reducing hydrogenase subunit HndA {ECO:0000313|EMBL:EQB27033.1}; EC=1.12.1.3 {ECO:0000313|EMBL:EQB27033.1};; TaxID=1123288 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Sporomusa.;" source="Sporomusa ovata DSM 2662.;"
NADH dehydrogenase (quinone); K00334 NADH-quinone oxidoreductase subunit E [EC:1.6.5.3]
NADP-reducing hydrogenase subunit HndA n=1 Tax=Sporomusa ovata DSM 2662 RepID=T0JYJ2_9FIRM
08E140C01_z5_2013_Ig3399_v2_scaffold_3564_4
Sporomusa ovata, Sporomusa, Selenomonadales, Negativicutes, Firmicutes, Bacteria

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2300..3601
DNA (1302bp) protein (434aa)
NADP-reducing hydrogenase subunit HndC {ECO:0000313|EMBL:EQB27032.1}; EC=1.12.1.3 {ECO:0000313|EMBL:EQB27032.1};; TaxID=1123288 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Sporomusa.;" source="Sporomusa ovata DSM 2662.;"
NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit; K00335 NADH-quinone oxidoreductase subunit F [EC:1.6.5.3] rbh
NADP-reducing hydrogenase subunit HndC n=1 Tax=Sporomusa ovata DSM 2662 RepID=T0IRC2_9FIRM rbh
08E140C01_z5_2013_Ig3399_v2_scaffold_3564_5
Sporomusa ovata, Sporomusa, Selenomonadales, Negativicutes, Firmicutes, Bacteria

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3603..5342
DNA (1740bp) protein (580aa)
NADP-reducing hydrogenase subunit HndC {ECO:0000313|EMBL:EQB27031.1}; EC=1.12.1.3 {ECO:0000313|EMBL:EQB27031.1};; TaxID=1123288 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Sporomusa.;" source="Sporomusa ovata DSM 2662.;"
hydrogenase subunit; K00336 NADH-quinone oxidoreductase subunit G [EC:1.6.5.3]
NADP-reducing hydrogenase subunit HndC n=1 Tax=Sporomusa ovata DSM 2662 RepID=T0IMF2_9FIRM rbh
08E140C01_z5_2013_Ig3399_v2_scaffold_3564_6
Acetonema longum, Acetonema, Selenomonadales, Negativicutes, Firmicutes, Bacteria

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comp(5428..6201)
DNA (774bp) protein (258aa)
Two component transcriptional regulator, LytTR family protein n=1 Tax=Acetonema longum DSM 6540 RepID=F7NMM1_9FIRM
Two component transcriptional regulator, LytTR family protein {ECO:0000313|EMBL:EGO62713.1}; TaxID=1009370 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Acetonema.;" source="Acetonema longum DSM 6540.;"
two-component response regulator; K02477 two-component system, LytT family, response regulator
08E140C01_z5_2013_Ig3399_v2_scaffold_3564_7
Caloranaerobacter azorensis, Caloranaerobacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(6203..7918)
DNA (1716bp) protein (572aa)
signal transduction histidine kinase LytS; K07704 two-component system, LytT family, sensor histidine kinase LytS [EC:2.7.13.3]
Autolysis histidine kinase LytS n=1 Tax=Clostridiaceae bacterium L21-TH-D2 RepID=R1CAY2_9CLOT
Histidine kinase {ECO:0000313|EMBL:KGG80047.1}; TaxID=1156417 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Caloranaerobacter.;" source="Caloranaerobacter azorensis H53214.;"
08E140C01_z5_2013_Ig3399_v2_scaffold_3564_8
Halanaerobium saccharolyticum, Halanaerobium, Halanaerobiales, Clostridia, Firmicutes, Bacteria

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comp(8000..9211)
DNA (1212bp) protein (404aa)
L-carnitine dehydratase/bile acid-inducible protein F {ECO:0000313|EMBL:CCU77838.1}; EC=2.8.3.16 {ECO:0000313|EMBL:CCU77838.1};; TaxID=1293054 species="Bacteria; Firmicutes; Clostridia; Halanaerobiales; Halanaerobiaceae; Halanaerobium.;" source="Halanaerobium saccharolyticum subsp. saccharolyticum DSM 6643.;"
formyl-CoA transferase (EC:2.8.3.16)
L-carnitine dehydratase/bile acid-inducible protein F n=1 Tax=Halanaerobium saccharolyticum subsp. saccharolyticum DSM 6643 RepID=M5DWU2_9FIRM rbh
08E140C01_z5_2013_Ig3399_v2_scaffold_3564_9
Clostridiaceae bacterium BRH_c20a, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9233..9982)
DNA (750bp) protein (250aa)
Sec-independent protein translocase protein TatC n=1 Tax=Moorella thermoacetica (strain ATCC 39073) RepID=Q2RIZ6_MOOTA
Sec-independent protein translocase protein TatC {ECO:0000256|HAMAP-Rule:MF_00902}; TaxID=1629719 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae.;" source="Clostridiaceae bacterium BRH_c20a.;"
Sec-independent protein translocase TatC; K03118 sec-independent protein translocase protein TatC
08E140C01_z5_2013_Ig3399_v2_scaffold_3564_10
unknown

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comp(10019..10783)
DNA (765bp) protein (255aa)

This feature has no annotations

08E140C01_z5_2013_Ig3399_v2_scaffold_3564_11
Veillonella ratti, Veillonella, Selenomonadales, Negativicutes, Firmicutes, Bacteria

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comp(10813..10998)
DNA (186bp) protein (62aa)
Sec-independent protein translocase protein TatA n=1 Tax=Veillonella ratti ACS-216-V-Col6b RepID=K9DP03_9FIRM
Sec-independent protein translocase protein TatA {ECO:0000256|HAMAP-Rule:MF_00236}; TaxID=883156 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Veillonella.;" source="Veillonella ratti ACS-216-V-Col6b.;"
twin-arginine translocation protein, TatA/E family subunit; K03116 sec-independent protein translocase protein TatA
08E140C01_z5_2013_Ig3399_v2_scaffold_3564_12
unknown

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comp(11016..11306)
DNA (291bp) protein (97aa)

This feature has no annotations

08E140C01_z5_2013_Ig3399_v2_scaffold_3564_13
Pyramidobacter piscolens, Pyramidobacter, Synergistales, Synergistia, Synergistetes, Bacteria

Not on your lists

comp(11495..12655)
DNA (1161bp) protein (387aa)
Uncharacterized protein n=1 Tax=Pyramidobacter piscolens W5455 RepID=D1Y4E2_9BACT rbh
Uncharacterized protein {ECO:0000313|EMBL:EFB90838.1}; TaxID=352165 species="Bacteria; Synergistetes; Synergistia; Synergistales; Synergistaceae; Pyramidobacter.;" source="Pyramidobacter piscolens W5455.;"
hypothetical protein; K03293 amino acid transporter, AAT family
08E140C01_z5_2013_Ig3399_v2_scaffold_3564_14
Pyramidobacter piscolens, Pyramidobacter, Synergistales, Synergistia, Synergistetes, Bacteria

Not on your lists

comp(12668..13747)
DNA (1080bp) protein (360aa)
Tat pathway signal sequence domain protein n=1 Tax=Pyramidobacter piscolens W5455 RepID=D1Y4E1_9BACT rbh
Tat pathway signal sequence domain protein {ECO:0000313|EMBL:EFB90837.1}; TaxID=352165 species="Bacteria; Synergistetes; Synergistia; Synergistales; Synergistaceae; Pyramidobacter.;" source="Pyramidobacter piscolens W5455.;"
metal-dependent hydrolase, beta-lactamase superfamily II
08E140C01_z5_2013_Ig3399_v2_scaffold_3564_15
Eubacterium sp. CAG:274, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14624..14992)
DNA (369bp) protein (123aa)
Uncharacterized protein n=1 Tax=Eubacterium sp. CAG:274 RepID=R6QEE2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC20297.1}; TaxID=1262888 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:274.;"
hypothetical protein
08E140C01_z5_2013_Ig3399_v2_scaffold_3564_16
Lachnospiraceae bacterium 5_1_63FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(14996..15235)
DNA (240bp) protein (80aa)
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 5_1_63FAA RepID=E5VLA7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFV16418.1}; TaxID=658089 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 5_1_63FAA.;"
YcfA-like protein.
08E140C01_z5_2013_Ig3399_v2_scaffold_3564_17
Desulfotomaculum reducens, Desulfotomaculum, Clostridiales, Clostridia, Firmicutes, Bacteria

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15761..16546
DNA (786bp) protein (262aa)
integrase n=1 Tax=Acetivibrio cellulolyticus RepID=UPI0001E2F0FA rbh
integrase catalytic subunit
Integrase, catalytic region {ECO:0000313|EMBL:ABO51528.1}; TaxID=349161 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Desulfotomaculum.;" source="Desulfotomaculum reducens (strain MI-1).;"
Displaying 17 items

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