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08E140C01_z5_2013_Ig3399_v2_scaffold_935

Search features with annotation key words

Displaying items 1-30 of 35 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
08E140C01_z5_2013_Ig3399_v2_scaffold_935_1
Desulfosporosinus meridiei, Desulfosporosinus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2..244)
DNA (243bp) protein (81aa)
Transposase n=1 Tax=Desulfosporosinus meridiei (strain ATCC BAA-275 / DSM 13257 / NCIMB 13706 / S10) RepID=G6G790_DESMD
transposase
Transposase {ECO:0000313|EMBL:AFQ44107.1}; TaxID=768704 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Desulfosporosinus.;" source="Desulfosporosinus meridiei (strain ATCC BAA-275 / DSM 13257 / NCIMB; 13706 / S10).;"
08E140C01_z5_2013_Ig3399_v2_scaffold_935_2
Pontibacillus yanchengensis, Pontibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(395..3304)
DNA (2910bp) protein (970aa)
hypothetical protein n=1 Tax=Clostridium beijerinckii RepID=UPI000361E425 rbh
Histidine kinase {ECO:0000313|EMBL:KGP72741.1}; TaxID=1385514 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Pontibacillus.;" source="Pontibacillus yanchengensis Y32.;"
multi-sensor hybrid histidine kinase rbh
08E140C01_z5_2013_Ig3399_v2_scaffold_935_3
Dehalobacter restrictus, Dehalobacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3363..4334)
DNA (972bp) protein (324aa)
Response regulator receiver modulated metal dependent phosphohydrolase n=2 Tax=Dehalobacter RepID=K4L001_9FIRM
putative two component response regulator
Chemotaxis protein CheY {ECO:0000313|EMBL:AHF10943.1}; TaxID=871738 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Dehalobacter.;" source="Dehalobacter restrictus DSM 9455.;"
08E140C01_z5_2013_Ig3399_v2_scaffold_935_4
RBG_13_WOR_3_43_14_curated, WOR-3, Bacteria

Not on your lists

comp(4597..5649)
DNA (1053bp) protein (351aa)
Hypothetical conserved protein n=1 Tax=uncultured prokaryote RepID=H5SKA6_9ZZZZ
hypothetical protein Tax=RBG_13_WOR_3_43_14_curated
hypothetical protein
08E140C01_z5_2013_Ig3399_v2_scaffold_935_5
Thermacetogenium phaeum, Thermacetogenium, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5722..6630)
DNA (909bp) protein (303aa)
Aldolase-like protein n=1 Tax=Thermacetogenium phaeum (strain ATCC BAA-254 / DSM 12270 / PB) RepID=K4LGK3_THEPS rbh
aldolase-like protein rbh
Aldolase-like protein {ECO:0000313|EMBL:AFV12146.1}; TaxID=1089553 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Thermacetogenium.;" source="Thermacetogenium phaeum (strain ATCC BAA-254 / DSM 12270 / PB).;"
08E140C01_z5_2013_Ig3399_v2_scaffold_935_6
S_Thermacetogenium_phaeum_55_64, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6627..7667)
DNA (1041bp) protein (347aa)
Radical SAM domain-containing protein n=1 Tax=Thermacetogenium phaeum (strain ATCC BAA-254 / DSM 12270 / PB) RepID=K4LJA5_THEPS rbh
Radical SAM domain-containing protein Tax=S_Thermacetogenium_phaeum_55_64
radical SAM domain-containing protein rbh
08E140C01_z5_2013_Ig3399_v2_scaffold_935_7
S_Thermacetogenium_phaeum_55_64, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7760..8827)
DNA (1068bp) protein (356aa)
Biotin/lipoate A/B protein ligase-like protein n=1 Tax=Thermacetogenium phaeum (strain ATCC BAA-254 / DSM 12270 / PB) RepID=K4LGY4_THEPS rbh
biotin/lipoate A/B protein ligase-like protein rbh
Biotin/lipoate A/B protein ligase-like protein Tax=S_Thermacetogenium_phaeum_55_64
08E140C01_z5_2013_Ig3399_v2_scaffold_935_8
Thermodesulfatator indicus, Thermodesulfatator, Thermodesulfobacteriales, Thermodesulfobacteria, Thermodesulfobacteria, Bacteria

Not on your lists

comp(8926..10896)
DNA (1971bp) protein (657aa)
hydrogenase, Fe-only (EC:1.12.7.2); K00336 NADH-quinone oxidoreductase subunit G [EC:1.6.5.3] rbh
Hydrogenase, Fe-only {ECO:0000313|EMBL:AEH44377.1}; EC=1.12.7.2 {ECO:0000313|EMBL:AEH44377.1};; TaxID=667014 species="Bacteria; Thermodesulfobacteria; Thermodesulfobacteriales; Thermodesulfobacteriaceae; Thermodesulfatator.;" source="Thermodesulfatator indicus (strain DSM 15286 / JCM 11887 / CIR29812).;"
ferredoxin n=1 Tax=Thermodesulfatator atlanticus RepID=UPI0003B6139F rbh
08E140C01_z5_2013_Ig3399_v2_scaffold_935_9
Clostridiaceae bacterium BRH_c20a, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10893..12857)
DNA (1965bp) protein (655aa)
4Fe-4S ferredoxin; K03388 heterodisulfide reductase subunit A [EC:1.8.98.1]
4Fe-4S ferredoxin iron-sulfur binding domain-containing protein n=1 Tax=Archaeoglobus veneficus (strain DSM 11195 / SNP6) RepID=F2KPN9_ARCVS
Disulfide reductase {ECO:0000313|EMBL:KJS22130.1}; TaxID=1629719 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae.;" source="Clostridiaceae bacterium BRH_c20a.;"
08E140C01_z5_2013_Ig3399_v2_scaffold_935_10
delta proteobacterium NaphS2, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12854..14023)
DNA (1170bp) protein (390aa)
Cysteine-rich domain protein n=1 Tax=delta proteobacterium NaphS2 RepID=D8EXY0_9DELT
Cysteine-rich domain protein {ECO:0000313|EMBL:EFK11653.1}; TaxID=88274 species="Bacteria; Proteobacteria; Deltaproteobacteria.;" source="delta proteobacterium NaphS2.;"
Fe-S oxidoreductase
08E140C01_z5_2013_Ig3399_v2_scaffold_935_11
Desulfomonile tiedjei, Desulfomonile, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14078..14509)
DNA (432bp) protein (144aa)
Glycine cleavage system H protein n=1 Tax=Desulfomonile tiedjei (strain ATCC 49306 / DSM 6799 / DCB-1) RepID=I4C028_DESTA
glycine cleavage system H protein
Glycine cleavage system H protein {ECO:0000256|HAMAP-Rule:MF_00272}; TaxID=706587 species="Bacteria; Proteobacteria; Deltaproteobacteria; Syntrophobacterales; Syntrophaceae; Desulfomonile.;" source="Desulfomonile tiedjei (strain ATCC 49306 / DSM 6799 / DCB-1).;"
08E140C01_z5_2013_Ig3399_v2_scaffold_935_12
RBG_19FT_COMBO_Deltaproteobacteria_46_12_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14552..15709)
DNA (1158bp) protein (386aa)
CoB--CoM heterodisulfide reductase 2 iron-sulfur subunit D n=1 Tax=Sporomusa ovata DSM 2662 RepID=T0IJ23_9FIRM
Fe-S oxidoreductase Tax=RBG_19FT_COMBO_Deltaproteobacteria_46_12_curated
Fe-S oxidoreductase
08E140C01_z5_2013_Ig3399_v2_scaffold_935_13
Clostridiaceae bacterium BRH_c20a, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15759..17153)
DNA (1395bp) protein (465aa)
FAD/FMN-dependent dehydrogenase n=1 Tax=Desulfosporosinus youngiae DSM 17734 RepID=H5XT55_9FIRM rbh
FAD-binding protein {ECO:0000313|EMBL:KJS22599.1}; TaxID=1629719 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae.;" source="Clostridiaceae bacterium BRH_c20a.;"
FAD/FMN-dependent dehydrogenase rbh
08E140C01_z5_2013_Ig3399_v2_scaffold_935_14
Aminobacterium colombiense, Aminobacterium, Synergistales, Synergistia, Synergistetes, Bacteria

Not on your lists

comp(17172..17876)
DNA (705bp) protein (235aa)
Regulatory protein GntR HTH n=1 Tax=Aminobacterium colombiense (strain DSM 12261 / ALA-1) RepID=D5EFU7_AMICL
regulatory protein GntR HTH
Regulatory protein GntR HTH {ECO:0000313|EMBL:ADE57429.1}; TaxID=572547 species="Bacteria; Synergistetes; Synergistia; Synergistales; Synergistaceae; Aminobacterium.;" source="Aminobacterium colombiense (strain DSM 12261 / ALA-1).;"
08E140C01_z5_2013_Ig3399_v2_scaffold_935_15
S_Thermoanaerobacterales_50_218, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

18108..19139
DNA (1032bp) protein (344aa)
ABC-type glycine betaine transport, periplasmic subunit n=2 Tax=Tepidanaerobacter acetatoxydans (strain DSM 21804 / JCM 16047 / Re1) RepID=F4LT75_TEPAE rbh
glycine/betaine ABC transporter substrate-binding protein; K02002 glycine betaine/proline transport system substrate-binding protein rbh
ABC-type glycine betaine transport, periplasmic subunit Tax=S_Thermoanaerobacterales_50_218
08E140C01_z5_2013_Ig3399_v2_scaffold_935_16
Dehalobacter sp. UNSWDHB, Dehalobacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19283..19597
DNA (315bp) protein (105aa)
Uncharacterized protein n=1 Tax=Dehalobacter sp. UNSWDHB RepID=T0J808_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EQB20303.1}; TaxID=1339256 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Dehalobacter.;" source="Dehalobacter sp. UNSWDHB.;"
hypothetical protein
08E140C01_z5_2013_Ig3399_v2_scaffold_935_17
unknown

Not on your lists

comp(19683..19994)
DNA (312bp) protein (104aa)

This feature has no annotations

08E140C01_z5_2013_Ig3399_v2_scaffold_935_18
unknown

Not on your lists

comp(20029..20985)
DNA (957bp) protein (319aa)

This feature has no annotations

08E140C01_z5_2013_Ig3399_v2_scaffold_935_19
Pelosinus fermentans, Pelosinus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

comp(21025..22152)
DNA (1128bp) protein (376aa)
CHAD domain containing protein n=7 Tax=Pelosinus fermentans RepID=I8S2S9_9FIRM
CHAD domain containing protein {ECO:0000313|EMBL:EIW15771.1}; TaxID=1149862 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Pelosinus.;" source="Pelosinus fermentans B4.;"
adenylate cyclase
08E140C01_z5_2013_Ig3399_v2_scaffold_935_20
Thermoanaerobacter ethanolicus, Thermoanaerobacter, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22331..23170)
DNA (840bp) protein (280aa)
NAD-binding protein 3-hydroxyacyl-CoA dehydrogenase; K00074 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157]
3-hydroxyacyl-CoA dehydrogenase, NAD-binding n=1 Tax=Thermoanaerobacter ethanolicus JW 200 RepID=F1ZT22_THEET
3-hydroxyacyl-CoA dehydrogenase, NAD-binding {ECO:0000313|EMBL:EGD52796.1}; Flags: Precursor;; TaxID=509192 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Thermoanaerobacter.;" source="Thermoanaerobacter ethanolicus JW 200.;"
08E140C01_z5_2013_Ig3399_v2_scaffold_935_21
Desulfotomaculum gibsoniae, Desulfotomaculum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23349..24551)
DNA (1203bp) protein (401aa)
Acetyl-CoA acetyltransferase n=1 Tax=Desulfotomaculum gibsoniae DSM 7213 RepID=R4KMI7_9FIRM rbh
acetyl-CoA acetyltransferase rbh
Acetyl-CoA acetyltransferase {ECO:0000313|EMBL:AGL03899.1}; Flags: Precursor;; TaxID=767817 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Desulfotomaculum.;" source="Desulfotomaculum gibsoniae DSM 7213.;"
08E140C01_z5_2013_Ig3399_v2_scaffold_935_22
Thermosediminibacter oceani, Thermosediminibacter, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24834..25769)
DNA (936bp) protein (312aa)
Uncharacterized protein n=1 Tax=Clostridiaceae bacterium L21-TH-D2 RepID=R1AWD3_9CLOT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADL08714.1}; Flags: Precursor;; TaxID=555079 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacterales Family III. Incertae Sedis; Thermosediminibacter.;" source="Thermosediminibacter oceani (strain ATCC BAA-1034 / DSM 16646 /; JW/IW-1228P).;"
08E140C01_z5_2013_Ig3399_v2_scaffold_935_23
Clostridiaceae bacterium BRH_c20a, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25876..26433)
DNA (558bp) protein (186aa)
hypothetical protein; K01678 fumarate hydratase subunit beta [EC:4.2.1.2]
Putative uncharacterized protein n=1 Tax=Eggerthella sp. (strain YY7918) RepID=F7V0G2_EEGSY
Fumarate hydratase {ECO:0000313|EMBL:KJS20224.1}; TaxID=1629719 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae.;" source="Clostridiaceae bacterium BRH_c20a.;"
08E140C01_z5_2013_Ig3399_v2_scaffold_935_24
Clostridiaceae bacterium BRH_c20a, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26468..27313)
DNA (846bp) protein (282aa)
Fumarate hydratase {ECO:0000313|EMBL:KJS20223.1}; EC=4.2.1.2 {ECO:0000313|EMBL:KJS20223.1};; TaxID=1629719 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae.;" source="Clostridiaceae bacterium BRH_c20a.;"
Fumarase alpha subunit n=1 Tax=Bacillus sp. 1NLA3E RepID=N0AXF2_9BACI rbh
fumarase alpha subunit rbh
08E140C01_z5_2013_Ig3399_v2_scaffold_935_25
Ruminiclostridium thermocellum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27359..28585)
DNA (1227bp) protein (409aa)
malate dehydrogenase (EC:1.1.1.38); K00027 malate dehydrogenase (oxaloacetate-decarboxylating) [EC:1.1.1.38]
Malic protein NAD-binding protein n=2 Tax=Clostridium thermocellum RepID=A3DCA3_CLOTH
Malic protein NAD-binding protein {ECO:0000313|EMBL:ABN51582.1}; TaxID=203119 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="Clostridium thermocellum (strain ATCC 27405 / DSM 1237 / NBRC 103400 /; NCIMB 10682 / NRRL B-4536 / VPI 7372) (Ruminiclostridium; thermocellum).;"
08E140C01_z5_2013_Ig3399_v2_scaffold_935_26
Thermincola potens, Thermincola, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28791..29708)
DNA (918bp) protein (306aa)
SufBD protein n=1 Tax=Thermincola potens (strain JR) RepID=D5XDE2_THEPJ rbh
SufBD protein rbh
SufBD protein {ECO:0000313|EMBL:ADG81790.1}; TaxID=635013 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Thermincola.;" source="Thermincola potens (strain JR).;"
08E140C01_z5_2013_Ig3399_v2_scaffold_935_27
Thermincola potens, Thermincola, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29695..30429)
DNA (735bp) protein (245aa)
ABC transporter related protein n=1 Tax=Thermincola potens (strain JR) RepID=D5XDE1_THEPJ rbh
ABC transporter; K09013 Fe-S cluster assembly ATP-binding protein rbh
ABC transporter related protein {ECO:0000313|EMBL:ADG81789.1}; TaxID=635013 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Thermincola.;" source="Thermincola potens (strain JR).;"
08E140C01_z5_2013_Ig3399_v2_scaffold_935_28
Alkaliphilus oremlandii, Alkaliphilus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

30595..30912
DNA (318bp) protein (106aa)
Transcriptional regulator, ArsR family n=1 Tax=Alkaliphilus oremlandii (strain OhILAs) RepID=A8MEW4_ALKOO
ArsR family transcriptional regulator; K03892 ArsR family transcriptional regulator
Transcriptional regulator, ArsR family {ECO:0000313|EMBL:ABW18443.1}; TaxID=350688 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Alkaliphilus.;" source="Alkaliphilus oremlandii (strain OhILAs) (Clostridium oremlandii; (strain OhILAs)).;"
08E140C01_z5_2013_Ig3399_v2_scaffold_935_29
Dehalobacter sp. CF, Dehalobacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30977..31687)
DNA (711bp) protein (237aa)
metal ABC transporter n=1 Tax=Dehalobacter sp. FTH1 RepID=UPI000376188E
Zinc transporter ZIP
Metal transporter, ZIP family {ECO:0000313|EMBL:AFV05728.1}; TaxID=1131462 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Dehalobacter.;" source="Dehalobacter sp. CF.;"
08E140C01_z5_2013_Ig3399_v2_scaffold_935_30
Desulfitobacterium metallireducens, Desulfitobacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(31806..32453)
DNA (648bp) protein (216aa)
TrkA-N domain protein n=1 Tax=Desulfitobacterium metallireducens DSM 15288 RepID=G6GDZ6_9FIRM
Potassium transporter Trk {ECO:0000313|EMBL:AHF06341.1}; TaxID=871968 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Desulfitobacterium.;" source="Desulfitobacterium metallireducens DSM 15288.;"
K+ transport system, NAD-binding component; K03499 trk system potassium uptake protein TrkA
Displaying items 1-30 of 35 in total

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