ggKbase home page

Ig3397_v2_scaffold_860

Search features with annotation key words

Displaying 27 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
Ig3397_v2_scaffold_860_1
BJP_IG2102_Coriobacteriales_64_17, Coriobacteriales, Coriobacteridae, Actinobacteria, Bacteria

Not on your lists

113..2257
DNA (2145bp) protein (715aa)
Cytochrome c-type biogenesis protein CcmF n=1 Tax=Eggerthella sp. 1_3_56FAA RepID=E5XBI8_9ACTN
CcmF; cytochrome c biogenesis factor; K02198 cytochrome c-type biogenesis protein CcmF
Tax=BJP_IG2102_Coriobacteriales_64_17
Ig3397_v2_scaffold_860_2
BJP_IG2102_Coriobacteriales_64_17, Coriobacteriales, Coriobacteridae, Actinobacteria, Bacteria

Not on your lists

2259..2990
DNA (732bp) protein (244aa)
ABC-type multidrug transport system, ATPase component n=1 Tax=Gordonibacter pamelaeae 7-10-1-b RepID=D6E7E8_9ACTN
ABC-type multidrug transport system, ATPase component
Tax=BJP_IG2102_Coriobacteriales_64_17
Ig3397_v2_scaffold_860_3
BJP_08E140C01_Coriobacteriales_62_12, Coriobacteriales, Coriobacteridae, Actinobacteria, Bacteria

Not on your lists

3065..3721
DNA (657bp) protein (219aa)
Cytochrome c-type biogenesis protein CcmB n=2 Tax=Bacteria RepID=C8WLS1_EGGLE
cytochrome c-type biogenesis protein CcmB; K02194 heme exporter protein B
Tax=BJP_08E140C01_Coriobacteriales_62_12
Ig3397_v2_scaffold_860_4
BJP_IG2102_Coriobacteriales_64_17, Coriobacteriales, Coriobacteridae, Actinobacteria, Bacteria

Not on your lists

3759..4523
DNA (765bp) protein (255aa)
ABC-type transport system involved in cytochrome c biogenesis, permease component n=1 Tax=Slackia heliotrinireducens (strain ATCC 29202 / DSM 20476 / NCTC 11029 / RHS 1) RepID=C7N4I9_SLAHD
cytochrome c biogenesis ABC transporter permease; K02195 heme exporter protein C
Tax=BJP_IG2102_Coriobacteriales_64_17
Ig3397_v2_scaffold_860_5
unknown

Not on your lists

4549..4737
DNA (189bp) protein (63aa)

This feature has no annotations

Ig3397_v2_scaffold_860_6
BJP_08E140C01_Coriobacteriales_62_12, Coriobacteriales, Coriobacteridae, Actinobacteria, Bacteria

Not on your lists

4809..5660
DNA (852bp) protein (284aa)
Uncharacterized protein n=1 Tax=Slackia piriformis YIT 12062 RepID=K0Z9X5_9ACTN
cytochrome C assembly protein
Tax=BJP_08E140C01_Coriobacteriales_62_12
Ig3397_v2_scaffold_860_7
BJP_IG2102_Coriobacteriales_64_17, Coriobacteriales, Coriobacteridae, Actinobacteria, Bacteria

Not on your lists

5669..6337
DNA (669bp) protein (223aa)
siroheme synthase; K02304 precorrin-2 dehydrogenase / sirohydrochlorin ferrochelatase [EC:1.3.1.76 4.99.1.4]
Siroheme synthase n=1 Tax=Eggerthella lenta (strain ATCC 25559 / DSM 2243 / JCM 9979 / NCTC 11813 / VPI 0255) RepID=C8WIZ4_EGGLE
Tax=BJP_IG2102_Coriobacteriales_64_17
Ig3397_v2_scaffold_860_8
BJP_IG2102_Coriobacteriales_64_17, Coriobacteriales, Coriobacteridae, Actinobacteria, Bacteria

Not on your lists

6334..7149
DNA (816bp) protein (272aa)
Uncharacterized protein n=1 Tax=Sorangium cellulosum So0157-2 RepID=S4XZT3_SORCE
hypothetical protein
Tax=BJP_IG2102_Coriobacteriales_64_17
Ig3397_v2_scaffold_860_9
BJP_IG2102_Coriobacteriales_64_17, Coriobacteriales, Coriobacteridae, Actinobacteria, Bacteria

Not on your lists

7390..8772
DNA (1383bp) protein (461aa)
hemA; glutamyl-tRNA reductase (EC:1.2.1.70); K02492 glutamyl-tRNA reductase [EC:1.2.1.70]
Glutamyl-tRNA reductase id=4326315 bin=GWC2_Deltaproteobacteria_42_51 species=unknown genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Deltaproteobacteria_42_51 organism_group=Deltaproteobacteria
Tax=BJP_IG2102_Coriobacteriales_64_17
Ig3397_v2_scaffold_860_10
BJP_IG2102_Coriobacteriales_64_17, Coriobacteriales, Coriobacteridae, Actinobacteria, Bacteria

Not on your lists

8756..9715
DNA (960bp) protein (320aa)
porphobilinogen deaminase; K01749 hydroxymethylbilane synthase [EC:2.5.1.61]
Porphobilinogen deaminase id=1999228 bin=GWB2_Nitrospirae_rel_47_37 species=unknown genus=unknown taxon_order=unknown taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWB2_Nitrospirae_rel_47_37 organism_group=Nitrospirae organism_desc=Good + (but may not be Nitrospirae phylum)
Tax=BJP_IG2102_Coriobacteriales_64_17
Ig3397_v2_scaffold_860_11
BJP_IG2102_Coriobacteriales_64_17, Coriobacteriales, Coriobacteridae, Actinobacteria, Bacteria

Not on your lists

9740..10555
DNA (816bp) protein (272aa)
uroporphyrin-III C-methyltransferase; K13542 uroporphyrinogen III methyltransferase / synthase [EC:2.1.1.107 4.2.1.75] id=14430646 bin=bin3_NC10 species=Syntrophobacter fumaroxidans genus=Syntrophobacter taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin3_NC10 organism_group=NC10
uroporphyrin-III C-methyltransferase; K13542 uroporphyrinogen III methyltransferase / synthase [EC:2.1.1.107 4.2.1.75]
Tax=BJP_IG2102_Coriobacteriales_64_17
Ig3397_v2_scaffold_860_trna_1
unknown

Not on your lists

10664..10736
DNA (73bp)
transferRNA
Ig3397_v2_scaffold_860_12
unknown

Not on your lists

10841..11074
DNA (234bp) protein (78aa)

This feature has no annotations

Ig3397_v2_scaffold_860_13
BJP_08E140C01_Coriobacteriales_62_12, Coriobacteriales, Coriobacteridae, Actinobacteria, Bacteria

Not on your lists

11085..12065
DNA (981bp) protein (327aa)
porphobilinogen synthase (EC:4.2.1.24); K01698 porphobilinogen synthase [EC:4.2.1.24] rbh
Delta-aminolevulinic acid dehydratase n=1 Tax=Slackia heliotrinireducens (strain ATCC 29202 / DSM 20476 / NCTC 11029 / RHS 1) RepID=C7N5L3_SLAHD rbh
Tax=BJP_08E140C01_Coriobacteriales_62_12
Ig3397_v2_scaffold_860_14
BJP_08E140C01_Coriobacteriales_62_12, Coriobacteriales, Coriobacteridae, Actinobacteria, Bacteria

Not on your lists

12142..13521
DNA (1380bp) protein (460aa)
Predicted Fe-S oxidoreductase n=1 Tax=Cryptobacterium curtum (strain ATCC 700683 / DSM 15641 / 12-3) RepID=C7MKX0_CRYCD rbh
Fe-S oxidoreductase rbh
Tax=BJP_08E140C01_Coriobacteriales_62_12
Ig3397_v2_scaffold_860_15
BJP_IG2102_Coriobacteriales_64_17, Coriobacteriales, Coriobacteridae, Actinobacteria, Bacteria

Not on your lists

13630..16218
DNA (2589bp) protein (863aa)
Uncharacterized protein n=1 Tax=Azoarcus sp. KH32C RepID=H0PV56_9RHOO
hypothetical protein
Tax=BJP_IG2102_Coriobacteriales_64_17
Ig3397_v2_scaffold_860_16
CG_Solirubrobact_01, Rubrobacteridae, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

16325..18025
DNA (1701bp) protein (567aa)
Spermine synthase n=1 Tax=Geobacter daltonii (strain DSM 22248 / JCM 15807 / FRC-32) RepID=B9M7X8_GEODF rbh
spermine synthase rbh
Tax=CG_Solirubrobact_01
Ig3397_v2_scaffold_860_17
unknown

Not on your lists

18153..18503
DNA (351bp) protein (117aa)

This feature has no annotations

Ig3397_v2_scaffold_860_18
BJP_IG2102_Coriobacteriales_64_17, Coriobacteriales, Coriobacteridae, Actinobacteria, Bacteria

Not on your lists

comp(18500..19510)
DNA (1011bp) protein (337aa)
Putative uncharacterized protein id=2273139 bin=GWB2_Clostridiales_37_7 species=Alkaliphilus metalliredigens genus=Alkaliphilus taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWB2_Clostridiales_37_7 organism_group=Firmicute organism_desc=Good +
hypothetical protein
Tax=BJP_IG2102_Coriobacteriales_64_17
Ig3397_v2_scaffold_860_19
BJP_IG2102_Coriobacteriales_64_17, Coriobacteriales, Coriobacteridae, Actinobacteria, Bacteria

Not on your lists

19696..20985
DNA (1290bp) protein (430aa)
glutamate-1-semialdehyde-2,1-aminomutase (EC:5.4.3.8); K01845 glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8]
Glutamate-1-semialdehyde 2,1-aminomutase n=1 Tax=Cryptobacterium curtum (strain ATCC 700683 / DSM 15641 / 12-3) RepID=C7MKW8_CRYCD
Tax=BJP_IG2102_Coriobacteriales_64_17
Ig3397_v2_scaffold_860_20
R_Rhodocyclales_63_24, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21076..21555
DNA (480bp) protein (160aa)
hypothetical protein n=1 Tax=Amycolatopsis sp. ATCC 39116 RepID=UPI0002629045
DNA polymerase beta domain-containing protein; K07075
Tax=RIFCSPLOWO2_02_FULL_Rhodocyclales_63_24_curated
Ig3397_v2_scaffold_860_21
RLO_Entotheonella_69_37, Entotheonella, Bacteria

Not on your lists

21552..22178
DNA (627bp) protein (209aa)
nucleotidyltransferase n=1 Tax=Thermus islandicus RepID=UPI0003B5783A
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Entotheonella_69_37_curated
Ig3397_v2_scaffold_860_22
BJP_08E140C01_Coriobacteriales_62_12, Coriobacteriales, Coriobacteridae, Actinobacteria, Bacteria

Not on your lists

22224..23093
DNA (870bp) protein (290aa)
UDP-glucose pyrophosphorylase n=1 Tax=Adlercreutzia equolifaciens DSM 19450 RepID=S6CC36_9ACTN rbh
UDP-glucose pyrophosphorylase rbh
Tax=BJP_08E140C01_Coriobacteriales_62_12
Ig3397_v2_scaffold_860_23
Candidatus Entotheonella sp. TSY2, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23154..23426
DNA (273bp) protein (91aa)
Uncharacterized protein {ECO:0000313|EMBL:ETX06341.1}; TaxID=1429439 species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY2.;"
Antitoxin of toxin-antitoxin (TA) system VapB id=3359256 bin=GWC2_Deltaproteobacteria_42_51 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Deltaproteobacteria_42_51 organism_group=Deltaproteobacteria
Ig3397_v2_scaffold_860_24
Candidatus Entotheonella sp. TSY2, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23414..23827
DNA (414bp) protein (138aa)
Ribonuclease VapC {ECO:0000256|HAMAP-Rule:MF_00265}; Short=RNase VapC {ECO:0000256|HAMAP-Rule:MF_00265};; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00265};; Toxin VapC {ECO:0000256|HAMAP-Rule:MF_00265}; TaxID=1429439 species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY2.;"
Ribonuclease VapC n=1 Tax=Sorangium cellulosum So0157-2 RepID=S4XT11_SORCE
hypothetical protein
Ig3397_v2_scaffold_860_25
BJP_08E140C01_Coriobacteriales_62_12, Coriobacteriales, Coriobacteridae, Actinobacteria, Bacteria

Not on your lists

23916..25373
DNA (1458bp) protein (486aa)
manC/pmi; bifunctional Mannose-1-phosphate guanylyltransferase/Mannose-6-phosphate isomerase (EC:2.7.7.22 5.3.1.8); K16011 mannose-1-phosphate guanylyltransferase / mannose-6-phosphate isomerase [EC:2.7.7.13 5.3.1.8]
Bifunctional Mannose-1-phosphate guanylyltransferase/Mannose-6-phosphate isomerase id=3927297 bin=GWC2_Nitrospirae-rel_56_14 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWC2_Nitrospirae-rel_56_14 organism_group=Nitrospirae organism_desc=Pretty good; based on recA
Tax=BJP_08E140C01_Coriobacteriales_62_12
Ig3397_v2_scaffold_860_26
RBG_16_Planctomycetes_43_13_curated, Planctomycetes, Bacteria

Not on your lists

25647..29966
DNA (4320bp) protein (1440aa)
Fibronectin type III domain protein n=1 Tax=Geodermatophilus obscurus (strain ATCC 25078 / DSM 43160 / JCM 3152 / G-20) RepID=D2S9Z7_GEOOG
Fibronectin type III domain-containing protein
Tax=RBG_16_Planctomycetes_43_13_curated
Displaying 27 items

View Taxonomy