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Ig9238_scaffold_878

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Displaying items 1-30 of 113 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
Ig9238_scaffold_878_1
R_Betaproteobacteria_62_17, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..152)
DNA (150bp) protein (50aa)
DNA polymerase I (EC:2.7.7.7)
DNA polymerase I Tax=Sideroxydans lithotrophicus (strain ES-1) RepID=D5CPR3_SIDLE
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_62_17_curated
Ig9238_scaffold_878_2
R_Betaproteobacteria_67_19, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

375..1226
DNA (852bp) protein (284aa)
Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster Tax=Chthonomonas calidirosea T49 RepID=S0ET95_9BACT
Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_67_19_curated
Ig9238_scaffold_878_3
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1633..2094
DNA (462bp) protein (154aa)
Putative uncharacterized protein Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SG51_THIDA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAZ98405.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
Ig9238_scaffold_878_4
Sulfuricella sp. T08, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2141..2488
DNA (348bp) protein (116aa)
Uncharacterized protein Tax=Sulfuricella denitrificans skB26 RepID=S6A9D0_9PROT
Uncharacterized protein {ECO:0000313|EMBL:GAO36005.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella sp. T08.;"
hypothetical protein
Ig9238_scaffold_878_5
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2511..3461
DNA (951bp) protein (317aa)
homoserine kinase (EC:2.7.1.39)
Homoserine kinase {ECO:0000255|HAMAP-Rule:MF_00301}; Short=HK {ECO:0000255|HAMAP-Rule:MF_00301};; Short=HSK {ECO:0000255|HAMAP-Rule:MF_00301};; EC=2.7.1.39 {ECO:0000255|HAMAP-Rule:MF_00301};; species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849).;"
Homoserine kinase Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=KHSE_NITMU
Ig9238_scaffold_878_6
Candidatus Accumulibacter sp. SK-12, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3562..4215
DNA (654bp) protein (218aa)
Uncharacterized protein Tax=Sulfuricella denitrificans skB26 RepID=S6AZF5_9PROT
Putative integral membrane protein {ECO:0000313|EMBL:EXI64997.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Candidatus Accumulibacter sp. SK-12.;"
hypothetical protein
Ig9238_scaffold_878_7
Sulfuricella denitrificans, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4202..6520)
DNA (2319bp) protein (773aa)
DNA helicase {ECO:0000256|SAAS:SAAS00145970}; EC=3.6.4.12 {ECO:0000256|SAAS:SAAS00145970};; species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella denitrificans skB26.;"
UvrD/REP helicase Tax=Sulfuricella denitrificans skB26 RepID=S6AAN2_9PROT
UvrD/REP helicase
Ig9238_scaffold_878_8
Nitrosomonas sp. AL212, Nitrosomonas, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


6681..9317
DNA (2637bp) protein (879aa)
leucyl-tRNA synthetase (EC:6.1.1.4)
Leucine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00049}; EC=6.1.1.4 {ECO:0000256|HAMAP-Rule:MF_00049};; Leucyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00049}; species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosomonas.;" source="Nitrosomonas sp. AL212.;"
Leucine--tRNA ligase Tax=Nitrosomonas sp. AL212 RepID=F9ZJH9_9PROT
Ig9238_scaffold_878_9
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9385..9801
DNA (417bp) protein (139aa)
Lipoprotein B transmembrane Tax=Sulfuricella denitrificans skB26 RepID=S6AAN4_9PROT
LPS-assembly lipoprotein RlpB precursor (Rare lipoprotein B)
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated
Ig9238_scaffold_878_10
CG_Beta_01, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9798..10826
DNA (1029bp) protein (343aa)
DNA polymerase III subunit delta Tax=Sulfuricella denitrificans skB26 RepID=S6AHE1_9PROT
DNA polymerase III subunit delta
Tax=CG_Beta_01
Ig9238_scaffold_878_11
Azoarcus sp. KH32C, Azoarcus, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10875..12167
DNA (1293bp) protein (431aa)
Gamma-glutamyl phosphate reductase {ECO:0000256|HAMAP-Rule:MF_00412, ECO:0000256|SAAS:SAAS00054156}; Short=GPR {ECO:0000256|HAMAP-Rule:MF_00412};; EC=1.2.1.41 {ECO:0000256|HAMAP-Rule:MF_00412, ECO:0000256|SAAS:SAAS00186003};; Glutamate-5-semialdehyde dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00412}; Glutamyl-gamma-semialdehyde dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00412}; species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Azoarcus.;" source="Azoarcus sp. KH32C.;"
gamma-glutamyl phosphate reductase Tax=Thiobacillus thioparus RepID=UPI00036C04C1
proA; gamma-glutamyl phosphate reductase
Ig9238_scaffold_878_12
Thauera sp. SWB20, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12247..12849
DNA (603bp) protein (201aa)
nicotinate (nicotinamide) nucleotide adenylyltransferase (EC:2.7.7.18)
Probable nicotinate-nucleotide adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00244}; EC=2.7.7.18 {ECO:0000256|HAMAP-Rule:MF_00244, ECO:0000256|SAAS:SAAS00086517};; Deamido-NAD(+) diphosphorylase {ECO:0000256|HAMAP-Rule:MF_00244}; Deamido-NAD(+) pyrophosphorylase {ECO:0000256|HAMAP-Rule:MF_00244}; Nicotinate mononucleotide adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00244}; species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera sp. SWB20.;"
Probable nicotinate-nucleotide adenylyltransferase Tax=Thauera RepID=C4KCZ8_THASP
Ig9238_scaffold_878_13
Massilia sp. JS1662, Massilia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12858..13382
DNA (525bp) protein (175aa)
Ribosomal silencing factor RsfS Tax=Janthinobacterium sp. HH01 RepID=L9PG67_9BURK
Ribosomal silencing factor RsfS {ECO:0000256|HAMAP-Rule:MF_01477}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Massilia.;" source="Massilia sp. JS1662.;"
iojap-like protein
Ig9238_scaffold_878_14
Burkholderia ambifaria, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13383..13853
DNA (471bp) protein (157aa)
Ribosomal RNA large subunit methyltransferase H {ECO:0000256|HAMAP-Rule:MF_00658, ECO:0000256|SAAS:SAAS00039794}; EC=2.1.1.177 {ECO:0000256|HAMAP-Rule:MF_00658, ECO:0000256|SAAS:SAAS00039776};; 23S rRNA (pseudouridine1915-N3)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00658}; 23S rRNA m3Psi1915 methyltransferase {ECO:0000256|HAMAP-Rule:MF_00658}; rRNA (pseudouridine-N3-)-methyltransferase RlmH {ECO:0000256|HAMAP-Rule:MF_00658}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia cepacia complex.;" source="Burkholderia ambifaria IOP40-10.;"
Ribosomal RNA large subunit methyltransferase H Tax=Burkholderia ambifaria IOP40-10 RepID=B1FG78_9BURK
rRNA large subunit methyltransferase
Ig9238_scaffold_878_15
Pandoraea pnomenusa, Pandoraea, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13858..14469
DNA (612bp) protein (204aa)
hypothetical protein Tax=Pandoraea sp. B-6 RepID=UPI000378F708
septum formation inhibitor Maf
Maf-like protein PI93_05760 {ECO:0000256|HAMAP-Rule:MF_00528}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Pandoraea.;" source="Pandoraea pnomenusa.;"
Ig9238_scaffold_878_16
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14545..15999
DNA (1455bp) protein (485aa)
Ribonuclease, Rne/Rng family Tax=Accumulibacter phosphatis (strain UW-1) RepID=C7RLJ2_ACCPU
Rne/Rng family ribonuclease
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated
Ig9238_scaffold_878_17
RBG_16_Betaproteobacteria_58_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16012..18441)
DNA (2430bp) protein (810aa)
hypothetical protein Tax=Thiobacillus denitrificans RepID=UPI0003722695
hypothetical protein
Tax=RBG_16_Betaproteobacteria_58_11_curated
Ig9238_scaffold_878_18
Sulfuricella denitrificans, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18596..19180)
DNA (585bp) protein (195aa)
Uncharacterized protein Tax=Sulfuricella denitrificans skB26 RepID=S6AAN9_9PROT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAN33918.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella denitrificans skB26.;"
Ig9238_scaffold_878_19
R_Betaproteobacteria_67_26, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19183..19995)
DNA (813bp) protein (271aa)
pyrroline-5-carboxylate reductase (EC:1.5.1.2)
Pyrroline-5-carboxylate reductase Tax=Thauera sp. (strain MZ1T) RepID=C4KCA3_THASP
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_67_26_curated
Ig9238_scaffold_878_20
Ralstonia sp. PBA, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19992..20693)
DNA (702bp) protein (234aa)
Uncharacterized protein Tax=Ralstonia sp. PBA RepID=I9BTQ8_9RALS
Uncharacterized protein {ECO:0000313|EMBL:EIZ03131.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia sp. PBA.;"
yggS; hypothetical protein
Ig9238_scaffold_878_21
BJP_IG2103_Dechloromonas_63_51, Dechloromonas, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20782..21825
DNA (1044bp) protein (348aa)
Pilus retraction ATPase PilT Tax=Dechloromonas aromatica (strain RCB) RepID=Q478X0_DECAR
pilus retraction protein PilT
Tax=BJP_IG2103_Dechloromonas_63_51
Ig9238_scaffold_878_22
Sulfuricella denitrificans, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21842..22981
DNA (1140bp) protein (380aa)
Pilus retraction protein PilT Tax=Sulfuricella denitrificans skB26 RepID=S6AAP1_9PROT
pilus retraction protein PilT
Pilus retraction protein PilT {ECO:0000313|EMBL:BAN33923.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella denitrificans skB26.;"
Ig9238_scaffold_878_23
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23136..25625)
DNA (2490bp) protein (830aa)
PAS/PAC sensor hybrid histidine kinase Tax=Variovorax paradoxus (strain EPS) RepID=E6V622_VARPE
pas/pac sensor hybrid histidine kinase
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
Ig9238_scaffold_878_24
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25712..26425
DNA (714bp) protein (238aa)
Two component transcriptional regulator, winged helix family Tax=Variovorax paradoxus (strain EPS) RepID=E6V624_VARPE
winged helix family two component transcriptional regulator
Two component transcriptional regulator, winged helix family {ECO:0000313|EMBL:ADU38259.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
Ig9238_scaffold_878_25
Aromatoleum aromaticum, Aromatoleum, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26471..28489
DNA (2019bp) protein (673aa)
Hydrogenase-4 component B Tax=Aromatoleum aromaticum (strain EbN1) RepID=Q5P2G6_AROAE
hyfB; hydrogenase 4 subunit B
Hydrogenase-4 component B {ECO:0000313|EMBL:CAI08498.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Aromatoleum.;" source="Aromatoleum aromaticum (strain EbN1) (Azoarcus sp. (strain EbN1)).;"
Ig9238_scaffold_878_26
BJP_08E140C01_Dechloromonas_61_78, Dechloromonas, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28486..29433
DNA (948bp) protein (316aa)
Formate hydrogenlyase membrane subunit subunit HyfD Tax=Aromatoleum aromaticum (strain EbN1) RepID=Q5P2G7_AROAE
hyfD; formate hydrogenlyase membrane subunit HyfD
Tax=BJP_08E140C01_Dechloromonas_61_78
Ig9238_scaffold_878_27
Rhodocyclaceae bacterium PG1-Ca6, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29440..30099
DNA (660bp) protein (220aa)
formate hydrogenlyase Tax=Rhodocyclus sp. UW 659-1-F08 RepID=UPI00035FBA02
formate hydrogenlyase
Formate hydrogenlyase {ECO:0000313|EMBL:AJP47465.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae.;" source="Rhodocyclaceae bacterium PG1-Ca6.;"
Ig9238_scaffold_878_28
Candidatus Accumulibacter sp. BA-91, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30350..31588
DNA (1239bp) protein (413aa)
Hydrogenase-4 component B {ECO:0000313|EMBL:KFB71329.1}; EC=1.-.-.- {ECO:0000313|EMBL:KFB71329.1};; species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Candidatus Accumulibacter sp. BA-91.;"
Hydrogenase 4 subunit F Tax=Ralstonia syzygii R24 RepID=G2ZY80_9RALS
hydrogenase 4 subunit F
Ig9238_scaffold_878_29
Cupriavidus sp. SK-4, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31678..33234
DNA (1557bp) protein (519aa)
Formate hydrogenlyase subunit 5 Tax=Cupriavidus necator (strain ATCC 43291 / DSM 13513 / N-1) RepID=F8GUS0_CUPNN
Hydrogenase {ECO:0000313|EMBL:EYS85834.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus sp. SK-4.;"
hyfG; formate hydrogenlyase subunit 5
Ig9238_scaffold_878_30
R_Betaproteobacteria_66_14, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

33234..33761
DNA (528bp) protein (176aa)
NADH ubiquinone oxidoreductase, 20 kDa subunit Tax=Polaromonas sp. (strain JS666 / ATCC BAA-500) RepID=Q12F15_POLSJ
NADH ubiquinone oxidoreductase, 20 kDa subunit
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_66_14_curated
Displaying items 1-30 of 113 in total

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