ggKbase home page

Ig9238_scaffold_15563

Search features with annotation key words

Displaying items 1-30 of 89 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
Ig9238_scaffold_15563_1
delta proteobacterium MLMS-1, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..278)
DNA (276bp) protein (92aa)
Helix-turn-helix motif Tax=delta proteobacterium MLMS-1 RepID=Q1NWA9_9DELT
Helix-turn-helix motif {ECO:0000313|EMBL:EAT02511.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria.;" source="delta proteobacterium MLMS-1.;"
helix-turn-helix motif protein
Ig9238_scaffold_15563_2
unknown

Not on your lists

comp(278..370)
DNA (93bp) protein (31aa)

This feature has no annotations

Ig9238_scaffold_15563_3
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

871..2220
DNA (1350bp) protein (450aa)
glutamate dehydrogenase (EC:1.4.1.4)
Glutamate dehydrogenase Tax=Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ) RepID=B3E388_GEOLS
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
Ig9238_scaffold_15563_4
Rubrivivax benzoatilyticus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2220..3152
DNA (933bp) protein (311aa)
1,4-dihydroxy-2-naphthoate octaprenyltransferase {ECO:0000256|HAMAP-Rule:MF_01937}; Short=DHNA-octaprenyltransferase {ECO:0000256|HAMAP-Rule:MF_01937};; EC=2.5.1.74 {ECO:0000256|HAMAP-Rule:MF_01937};; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax benzoatilyticus JA2 = ATCC BAA-35.;"
menA; 1,4-Dihydroxy-2-naphtoate prenyltransferase MenA (EC:2.5.1.-)
1,4-dihydroxy-2-naphthoate octaprenyltransferase Tax=Rubrivivax benzoatilyticus JA2 = ATCC BAA-35 RepID=F3LQB1_9BURK
Ig9238_scaffold_15563_5
R_Methylophilales_57_10, Methylophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3246..4010)
DNA (765bp) protein (255aa)
inositol-phosphate phosphatase (EC:3.1.3.25)
Inositol-phosphate phosphatase Tax=Nitrosomonas eutropha (strain C91) RepID=Q0AIY6_NITEC
Tax=RIFCSPHIGHO2_02_FULL_Methylophilales_57_10_curated
Ig9238_scaffold_15563_6
Methylobacillus flagellatus, Methylobacillus, Methylophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4067..4705
DNA (639bp) protein (213aa)
tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ {ECO:0000256|RuleBase:RU362024}; EC=2.1.1.200 {ECO:0000256|RuleBase:RU362024};; tRNA (cytidine(32)/uridine(32)-2'-O)-methyltransferase {ECO:0000256|RuleBase:RU362024}; tRNA Cm32/Um32 methyltransferase {ECO:0000256|RuleBase:RU362024}; species="Bacteria; Proteobacteria; Betaproteobacteria; Methylophilales; Methylophilaceae; Methylobacillus.;" source="Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875).;"
RNA methyltransferase TrmH, group 1 Tax=Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875) RepID=Q1H357_METFK
RNA methyltransferase TrmH, group 1
Ig9238_scaffold_15563_7

Not on your lists

comp(4766..5956)
DNA (1191bp) protein (397aa)
Permease of the major facilitator superfamily Tax=sediment metagenome RepID=D9PKK3_9ZZZZ
Permease of the major facilitator superfamily {ECO:0000313|EMBL:EFK95911.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="sediment metagenome.;"
MFS permease
Ig9238_scaffold_15563_8
R_Betaproteobacteria_67_26, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6058..6792
DNA (735bp) protein (245aa)
Serine acetyltransferase Tax=Dechloromonas aromatica (strain RCB) RepID=Q47EN8_DECAR
serine O-acetyltransferase
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_67_26_curated
Ig9238_scaffold_15563_9
Pseudogulbenkiania sp. NH8B, Pseudogulbenkiania, Neisseriales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6866..7339
DNA (474bp) protein (158aa)
Transcriptional regulator, BadM/Rrf2 family Tax=Pseudogulbenkiania RepID=G2IZ67_PSEUL
BadM/Rrf2 family transcriptional regulator
Transcriptional regulator, BadM/Rrf2 family {ECO:0000313|EMBL:BAK78176.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Chromobacteriaceae; Pseudogulbenkiania.;" source="Pseudogulbenkiania sp. (strain NH8B).;"
Ig9238_scaffold_15563_10
Rhodocyclaceae bacterium PG1-Ca6, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7363..8580
DNA (1218bp) protein (406aa)
cysteine desulfurase (EC:2.8.1.7)
Cysteine desulfurase IscS {ECO:0000256|HAMAP-Rule:MF_00331, ECO:0000256|SAAS:SAAS00038344}; EC=2.8.1.7 {ECO:0000256|HAMAP-Rule:MF_00331, ECO:0000256|SAAS:SAAS00063383};; species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae.;" source="Rhodocyclaceae bacterium PG1-Ca6.;"
Cysteine desulfurase Tax=Sideroxydans lithotrophicus (strain ES-1) RepID=D5CLN8_SIDLE
Ig9238_scaffold_15563_11
Burkholderia sp. CCGE1003, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8631..9047
DNA (417bp) protein (139aa)
FeS cluster assembly scaffold IscU Tax=Burkholderia sp. (strain CCGE1003) RepID=E1T3J8_BURSG
FeS cluster assembly scaffold IscU
FeS cluster assembly scaffold IscU {ECO:0000313|EMBL:ADN57145.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. (strain CCGE1003).;"
Ig9238_scaffold_15563_12

Not on your lists

9047..9370
DNA (324bp) protein (108aa)
ISC system FeS cluster assembly, IscA scaffold Tax=sediment metagenome RepID=D9PL80_9ZZZZ
ISC system FeS cluster assembly, IscA scaffold {ECO:0000313|EMBL:EFK95685.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="sediment metagenome.;"
iron-sulfur cluster assembly protein IscA
Ig9238_scaffold_15563_13
R_Methylophilales_57_10, Methylophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9476..10018
DNA (543bp) protein (181aa)
Co-chaperone protein HscB homolog Tax=Sideroxydans lithotrophicus (strain ES-1) RepID=D5CLN5_SIDLE
co-chaperone Hsc20
Tax=RIFCSPHIGHO2_02_FULL_Methylophilales_57_10_curated
Ig9238_scaffold_15563_14
Ralstonia sp. 5_2_56FAA, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10057..11928
DNA (1872bp) protein (624aa)
Chaperone protein HscA homolog Tax=Ralstonia RepID=C6BFJ1_RALP1
hscA; chaperone protein HscA
Chaperone protein HscA homolog {ECO:0000256|HAMAP-Rule:MF_00679}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia sp. 5_2_56FAA.;"
Ig9238_scaffold_15563_15

Not on your lists

11925..12266
DNA (342bp) protein (114aa)
2Fe-2S ferredoxin Tax=sediment metagenome RepID=D9PME7_9ZZZZ
2Fe-2S ferredoxin {ECO:0000313|EMBL:EFK95268.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="sediment metagenome.;"
ferredoxin, 2Fe-2S type, ISC system
Ig9238_scaffold_15563_16
Burkholderia glumae, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12322..12516
DNA (195bp) protein (65aa)
FeS assembly protein IscX Tax=Burkholderia glumae (strain BGR1) RepID=C5A9V3_BURGB
iscX; FeS assembly protein IscX
FeS assembly protein IscX {ECO:0000313|EMBL:AJK47109.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia glumae PG1.;"
Ig9238_scaffold_15563_17
GWB2_Geobacteraceae_52_12_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12572..13963)
DNA (1392bp) protein (464aa)
Rhodanese domain protein bin=GWF2_Syntrophobacterales_56_9 species=Geobacter sp. genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Syntrophobacterales_56_9 organism_group=Deltaproteobacteria
cytochrome c with three rhodanese homology domains, selenocysteine-containing
Tax=GWB2_Geobacteraceae_52_12_curated
Ig9238_scaffold_15563_18
R_Betaproteobacteria_67_26, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14477..15886)
DNA (1410bp) protein (470aa)
Two sigma54 transcriptional regulator bin=GWE1_Burkholderiales_65_30 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria
two component sigma-54 specific transcriptional regulator
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_67_26_curated
Ig9238_scaffold_15563_19
unknown

Not on your lists

comp(15855..16019)
DNA (165bp) protein (55aa)

This feature has no annotations

Ig9238_scaffold_15563_20
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16016..17461)
DNA (1446bp) protein (482aa)
Putative sensory kinase in two-component system Tax=mine drainage metagenome RepID=E6QRK4_9ZZZZ
ATP-binding region ATPase domain-containing protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
Ig9238_scaffold_15563_21
Methyloversatilis universalis, Methyloversatilis, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17599..17808
DNA (210bp) protein (70aa)
hypothetical protein Tax=Methyloversatilis universalis RepID=UPI000370E38C
Uncharacterized protein {ECO:0000313|EMBL:EGK71704.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Methyloversatilis.;" source="Methyloversatilis universalis (strain ATCC BAA-1314 / JCM 13912 /; FAM5).;"
hypothetical protein
Ig9238_scaffold_15563_22
RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17805..18653)
DNA (849bp) protein (283aa)
serB; phosphoserine phosphatase (EC:3.1.3.3)
hypothetical protein Tax=Thiobacillus thioparus RepID=UPI00036390DC
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated
Ig9238_scaffold_15563_23
Sulfuricella denitrificans, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18650..22051)
DNA (3402bp) protein (1134aa)
Transcription-repair-coupling factor {ECO:0000256|HAMAP-Rule:MF_00969}; Short=TRCF {ECO:0000256|HAMAP-Rule:MF_00969};; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00969};; species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella denitrificans skB26.;"
Transcription-repair-coupling factor Tax=Sulfuricella denitrificans skB26 RepID=S6B477_9PROT
mfd; transcription-repair coupling factor
Ig9238_scaffold_15563_24
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22057..23571)
DNA (1515bp) protein (505aa)
fumarate hydratase Tax=Dyella japonica RepID=UPI0002E8E6E5
fumarate hydratase
Fumarate hydratase {ECO:0000313|EMBL:AIF47105.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
Ig9238_scaffold_15563_25
RLO_Burkholderiales_61_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23692..24339)
DNA (648bp) protein (216aa)
membrane protein Tax=Curvibacter lanceolatus RepID=UPI000382E19D
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_61_40_curated
Ig9238_scaffold_15563_26
GWA2_Gallionellales_54_124_curated, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24349..26025)
DNA (1677bp) protein (559aa)
AMP-dependent synthetase and ligase Tax=Gallionella capsiferriformans (strain ES-2) RepID=D9SHM1_GALCS
AMP-dependent synthetase and ligase
Tax=GWA2_Gallionellales_54_124_curated
Ig9238_scaffold_15563_27
Sulfuricella sp. T08, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26105..27241)
DNA (1137bp) protein (379aa)
aldolase Tax=Methylotenera RepID=UPI00037DD4D6
Aldolase {ECO:0000313|EMBL:GAO37277.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella sp. T08.;"
putative HpcH/HpaI aldolase/citrate lyase family
Ig9238_scaffold_15563_28
R_Betaproteobacteria_68_150, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27536..31318
DNA (3783bp) protein (1261aa)
Acetyl-coenzyme A synthetase Tax=Ralstonia pickettii (strain 12D) RepID=C6BJD4_RALP1
AMP-dependent synthetase
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_68_150_curated
Ig9238_scaffold_15563_29
GWA2_Gallionellales_59_43_curated, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31329..32027
DNA (699bp) protein (233aa)
Exonuclease Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SMK3_THIDA
exonuclease
Tax=GWA2_Gallionellales_59_43_curated
Ig9238_scaffold_15563_30
Thauera terpenica, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32135..32332
DNA (198bp) protein (66aa)
hypothetical protein Tax=Azoarcus toluclasticus RepID=UPI00035C202C
Uncharacterized protein {ECO:0000313|EMBL:EPZ17427.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera terpenica 58Eu.;"
hypothetical protein
Displaying items 1-30 of 89 in total

View Taxonomy