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Ig9238_scaffold_142331

Search features with annotation key words

Displaying items 1-30 of 357 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
Ig9238_scaffold_142331_1
Arenimonas donghaensis, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(166..1023)
DNA (858bp) protein (286aa)
Ribosomal RNA large subunit methyltransferase J {ECO:0000256|HAMAP-Rule:MF_00934}; EC=2.1.1.266 {ECO:0000256|HAMAP-Rule:MF_00934};; 23S rRNA (adenine(2030)-N6)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00934}; 23S rRNA m6A2030 methyltransferase {ECO:0000256|HAMAP-Rule:MF_00934}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas donghaensis DSM 18148 = HO3-R19.;"
hypothetical protein Tax=Xanthomonas sacchari RepID=UPI0002630C8B
hypothetical protein
Ig9238_scaffold_142331_2
Pseudoxanthomonas suwonensis, Pseudoxanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1147..1407
DNA (261bp) protein (87aa)
Uncharacterized protein {ECO:0000313|EMBL:AKC87006.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Pseudoxanthomonas.;" source="Pseudoxanthomonas suwonensis.;"
Uncharacterized protein bin=GWF1_Xanthomonadales_69_6 species=Janthinobacterium sp. HH01 genus=Janthinobacterium taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Xanthomonadales_69_6 organism_group=Gammaproteobacteria
Ig9238_scaffold_142331_3
Arenimonas oryziterrae, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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1569..1826
DNA (258bp) protein (86aa)
30S ribosomal protein S16 Tax=Arenimonas oryziterrae RepID=UPI0003B792FB
30S ribosomal protein S16 {ECO:0000256|HAMAP-Rule:MF_00385}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas oryziterrae DSM 21050 = YC6267.;"
30S ribosomal protein S16
Ig9238_scaffold_142331_4
Arenimonas metalli, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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1984..2517
DNA (534bp) protein (178aa)
Ribosome maturation factor RimM Tax=Xanthomonas albilineans (strain GPE PC73 / CFBP 7063) RepID=D2UCN7_XANAP
Ribosome maturation factor RimM {ECO:0000256|HAMAP-Rule:MF_00014, ECO:0000256|SAAS:SAAS00055369}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas metalli CF5-1.;"
rimM; 16s rrna-processing protein
Ig9238_scaffold_142331_5
Arenimonas donghaensis, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2525..3283
DNA (759bp) protein (253aa)
tRNA (guanine-N(1)-)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605, ECO:0000256|RuleBase:RU003464}; EC=2.1.1.228 {ECO:0000256|HAMAP-Rule:MF_00605, ECO:0000256|RuleBase:RU003464};; M1G-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605}; tRNA [GM37] methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas donghaensis DSM 18148 = HO3-R19.;"
tRNA (guanine-N1)-methyltransferase Tax=Xanthomonas sp. SHU308 RepID=UPI000364054F
tRNA (guanine-N1)-methyltransferase
Ig9238_scaffold_142331_6
Pseudoxanthomonas suwonensis, Pseudoxanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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3421..3801
DNA (381bp) protein (127aa)
50S ribosomal protein L19 Tax=Pseudoxanthomonas suwonensis (strain 11-1) RepID=E6WRQ1_PSEUU
50S ribosomal protein L19
50S ribosomal protein L19 {ECO:0000256|HAMAP-Rule:MF_00402, ECO:0000256|RuleBase:RU000559}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Pseudoxanthomonas.;" source="Pseudoxanthomonas suwonensis (strain 11-1).;"
Ig9238_scaffold_142331_7
unknown

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4066..4179
DNA (114bp) protein (38aa)

This feature has no annotations

Ig9238_scaffold_142331_8
Lysobacter daejeonensis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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4283..6163
DNA (1881bp) protein (627aa)
hypothetical protein Tax=Rudaea cellulosilytica RepID=UPI00035D9A77
Chaperone protein HtpG {ECO:0000256|HAMAP-Rule:MF_00505, ECO:0000256|SAAS:SAAS00218406}; Heat shock protein HtpG {ECO:0000256|HAMAP-Rule:MF_00505}; High temperature protein G {ECO:0000256|HAMAP-Rule:MF_00505}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter daejeonensis GH1-9.;"
heat shock protein 90
Ig9238_scaffold_142331_9
Xanthomonas albilineans, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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6171..6590
DNA (420bp) protein (140aa)
Probable ribosome-associated heat shock protein hsp15 Tax=Xanthomonas albilineans (strain GPE PC73 / CFBP 7063) RepID=D2UCP2_XANAP
hslR; ribosome-associated heat shock protein hsp15
Probable ribosome-associated heat shock protein hsp15 {ECO:0000313|EMBL:CBA15475.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas albilineans (strain GPE PC73 / CFBP 7063).;"
Ig9238_scaffold_142331_10
Arenimonas malthae, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(6893..7366)
DNA (474bp) protein (158aa)
AsnC family transcriptional regulator bin=GWF1_Xanthomonadales_69_6 species=Rhodanobacter spathiphylli genus=Rhodanobacter taxon_order=Xanthomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF1_Xanthomonadales_69_6 organism_group=Gammaproteobacteria
AsnC family transcriptional regulator {ECO:0000313|EMBL:KFN48554.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas malthae CC-JY-1.;"
AsnC family transcriptional regulator
Ig9238_scaffold_142331_11
Arenimonas donghaensis, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7459..8664
DNA (1206bp) protein (402aa)
Uncharacterized protein {ECO:0000313|EMBL:KFL35535.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas donghaensis DSM 18148 = HO3-R19.;"
Putative amino acid lyase bin=GWF1_Xanthomonadales_69_6 species=Rhodanobacter spathiphylli genus=Rhodanobacter taxon_order=Xanthomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF1_Xanthomonadales_69_6 organism_group=Gammaproteobacteria
putative amino acid lyase
Ig9238_scaffold_142331_12
Nitrosococcus halophilus, Nitrosococcus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(8871..9854)
DNA (984bp) protein (328aa)
hypothetical protein Tax=zeta proteobacterium SCGC AB-604-O16 RepID=UPI00037D1779
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADE14396.1}; Flags: Precursor;; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Nitrosococcus.;" source="Nitrosococcus halophilus (strain Nc4).;"
Ig9238_scaffold_142331_13
RBG_16_Desulfobacca_60_12_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(9898..11175)
DNA (1278bp) protein (426aa)
Putative uncharacterized protein Tax=Geobacter uraniireducens (strain Rf4) RepID=A5GEJ2_GEOUR
hypothetical protein
Tax=RBG_16_Desulfobacca_60_12_curated
Ig9238_scaffold_142331_14
Nitrococcus mobilis, Nitrococcus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11276..12265)
DNA (990bp) protein (330aa)
Dihydrokaempferol 4-reductase Tax=Nitrococcus mobilis Nb-231 RepID=A4BTL0_9GAMM
Dihydrokaempferol 4-reductase {ECO:0000313|EMBL:EAR20966.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Nitrococcus.;" source="Nitrococcus mobilis Nb-231.;"
NAD-dependent dehydratase
Ig9238_scaffold_142331_15
unknown

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comp(12262..12384)
DNA (123bp) protein (41aa)

This feature has no annotations

Ig9238_scaffold_142331_16
BJP_08E140C01_Xanthomonadales_64_42, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(12629..15322)
DNA (2694bp) protein (898aa)
DNA mismatch repair protein MutS Tax=Rhodanobacter denitrificans RepID=M4NHY6_9GAMM
DNA mismatch repair protein MutS
Tax=BJP_08E140C01_Xanthomonadales_64_42
Ig9238_scaffold_142331_17
Arenimonas malthae, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15482..16015
DNA (534bp) protein (178aa)
Competence/damage-inducible protein CinA-like protein bin=GWF1_Xanthomonadales_69_6 species=unknown genus=Xanthomonas taxon_order=Xanthomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF1_Xanthomonadales_69_6 organism_group=Gammaproteobacteria
Uncharacterized protein {ECO:0000313|EMBL:KFN48548.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas malthae CC-JY-1.;"
damage-inducible protein CinA
Ig9238_scaffold_142331_18
BJP_IG2103_SUB10_Xanthomonadales_61_45, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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16222..17256
DNA (1035bp) protein (345aa)
Protein RecA bin=GWF1_Xanthomonadales_69_6 species=unknown genus=unknown taxon_order=Xanthomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF1_Xanthomonadales_69_6 organism_group=Gammaproteobacteria
recA; recombinase A
Tax=BJP_IG2103_SUB10_Xanthomonadales_61_45
Ig9238_scaffold_142331_19
GWF1_Xanthomonadales_69_6_curated, Gammaproteobacteria, Proteobacteria, Bacteria

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17258..17746
DNA (489bp) protein (163aa)
Regulatory protein RecX bin=GWF1_Xanthomonadales_69_6 species=Xanthomonas translucens genus=Xanthomonas taxon_order=Xanthomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF1_Xanthomonadales_69_6 organism_group=Gammaproteobacteria
recX; recombination regulator RecX
Tax=GWF1_Xanthomonadales_69_6_curated
Ig9238_scaffold_142331_20
Arenimonas oryziterrae, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


17955..20606
DNA (2652bp) protein (884aa)
Alanine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00036, ECO:0000256|SAAS:SAAS00015689}; EC=6.1.1.7 {ECO:0000256|HAMAP-Rule:MF_00036, ECO:0000256|SAAS:SAAS00015673};; Alanyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00036}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas oryziterrae DSM 21050 = YC6267.;"
alanyl-tRNA synthetase Tax=Arenimonas oryziterrae RepID=UPI0003B6ED05
alaS; alanyl-tRNA synthetase
Ig9238_scaffold_142331_21
Marinobacter salarius, Marinobacter, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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20758..20958
DNA (201bp) protein (67aa)
Carbon storage regulator homolog Tax=Marinobacter santoriniensis NKSG1 RepID=M7CWB3_9ALTE
carbon storage regulator
Carbon storage regulator homolog {ECO:0000256|HAMAP-Rule:MF_00167, ECO:0000256|SAAS:SAAS00093889}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Alteromonadaceae; Marinobacter.;" source="Marinobacter salarius.;"
Ig9238_scaffold_142331_trna_1
unknown

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21040..21129
DNA (90bp)
transferRNA Ser
Ig9238_scaffold_142331_trna_2
unknown

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21261..21334
DNA (74bp)
transferRNA Arg
Ig9238_scaffold_142331_trna_3
unknown

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21508..21581
DNA (74bp)
transferRNA Pro
Ig9238_scaffold_142331_trna_4
unknown

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21677..21750
DNA (74bp)
transferRNA Arg
Ig9238_scaffold_142331_trna_5
unknown

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21815..21888
DNA (74bp)
transferRNA His
Ig9238_scaffold_142331_trna_6
unknown

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21948..22020
DNA (73bp)
transferRNA Lys
Ig9238_scaffold_142331_trna_7
unknown

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22059..22140
DNA (82bp)
transferRNA Leu
Ig9238_scaffold_142331_22
BJP_08E140C01_Xanthomonadales_64_42, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22213..23520
DNA (1308bp) protein (436aa)
Trigger factor bin=GWF1_Xanthomonadales_69_6 species=unknown genus=Xanthomonas taxon_order=Xanthomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF1_Xanthomonadales_69_6 organism_group=Gammaproteobacteria
tig; trigger factor
Tax=BJP_08E140C01_Xanthomonadales_64_42
Ig9238_scaffold_142331_23
Pseudoxanthomonas suwonensis, Pseudoxanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23572..24210
DNA (639bp) protein (213aa)
ATP-dependent Clp protease proteolytic subunit {ECO:0000256|HAMAP-Rule:MF_00444, ECO:0000256|RuleBase:RU003567}; EC=3.4.21.92 {ECO:0000256|HAMAP-Rule:MF_00444, ECO:0000256|RuleBase:RU000549};; Endopeptidase Clp {ECO:0000256|HAMAP-Rule:MF_00444}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Pseudoxanthomonas.;" source="Pseudoxanthomonas suwonensis.;"
ATP-dependent Clp protease proteolytic subunit ClpP (EC:3.4.21.92)
ATP-dependent Clp protease proteolytic subunit Tax=Pseudoxanthomonas suwonensis (strain 11-1) RepID=E6WUV6_PSEUU
Displaying items 1-30 of 357 in total

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