ggKbase home page

LacPavin_0818_WC55_scaffold_56344_prodigal-single

Search features with annotation key words

Displaying items 1-30 of 308 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
LacPavin_0818_WC55_scaffold_56344_prodigal-single_1
unknown

Not on your lists

3..1775
-----------------
DNA (1773bp)
protein (591aa)

This feature has no annotations

LacPavin_0818_WC55_scaffold_56344_prodigal-single_2

Not on your lists

comp(1778..2335)
-----------------
DNA (558bp)
protein (186aa)
Transcriptional regulator y4mF family n=1 Tax=Bacteroides sp. CAG:598 RepID=R5C5D7_9BACE
Marine sediment metagenome DNA, contig: S01H1_L00200 {ECO:0000313|EMBL:GAF79921.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
XRE family transcriptional regulator
LacPavin_0818_WC55_scaffold_56344_prodigal-single_3
unknown

Not on your lists

comp(2424..2696)
-----------------
DNA (273bp)
protein (91aa)

This feature has no annotations

LacPavin_0818_WC55_scaffold_56344_prodigal-single_4
unknown

Not on your lists

comp(2755..3219)
-----------------
DNA (465bp)
protein (155aa)

This feature has no annotations

LacPavin_0818_WC55_scaffold_56344_prodigal-single_5
unknown

Not on your lists

comp(3223..3714)
-----------------
DNA (492bp)
protein (164aa)

This feature has no annotations

LacPavin_0818_WC55_scaffold_56344_prodigal-single_6
unknown

Not on your lists

comp(3716..4834)
-----------------
DNA (1119bp)
protein (373aa)

This feature has no annotations

LacPavin_0818_WC55_scaffold_56344_prodigal-single_7
unknown

Not on your lists

comp(5104..5484)
-----------------
DNA (381bp)
protein (127aa)

This feature has no annotations

LacPavin_0818_WC55_scaffold_56344_prodigal-single_8
unknown

Not on your lists

comp(5547..5954)
-----------------
DNA (408bp)
protein (136aa)

This feature has no annotations

LacPavin_0818_WC55_scaffold_56344_prodigal-single_9
unknown

Not on your lists

comp(5964..6449)
-----------------
DNA (486bp)
protein (162aa)

This feature has no annotations

LacPavin_0818_WC55_scaffold_56344_prodigal-single_10
RBG_16_Desulfobacca_58_9_curated, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6531..6857
-----------------
DNA (327bp)
protein (109aa)
Putative uncharacterized protein n=1 Tax=Ammonifex degensii (strain DSM 10501 / KC4) RepID=C9RCQ1_AMMDK
methyltransferase
Tax=RBG_16_Desulfobacca_58_9_curated
LacPavin_0818_WC55_scaffold_56344_prodigal-single_11
unknown

Not on your lists

6862..7161
-----------------
DNA (300bp)
protein (100aa)

This feature has no annotations

LacPavin_0818_WC55_scaffold_56344_prodigal-single_trna_45
unknown

Not on your lists

comp(7166..7250)
-----------------
DNA (85bp)
transferRNA Ser
LacPavin_0818_WC55_scaffold_56344_prodigal-single_12

Not on your lists

7523..8200
-----------------
DNA (678bp)
protein (226aa)
Uncharacterized protein n=1 Tax=Oscillatoria nigro-viridis PCC 7112 RepID=K9VBC8_9CYAN
Marine sediment metagenome DNA, contig: S01H1_C01298 {ECO:0000313|EMBL:GAF69878.1}; Flags: Fragment;; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
hypothetical protein
LacPavin_0818_WC55_scaffold_56344_prodigal-single_trna_44
unknown

Not on your lists

comp(8202..8283)
-----------------
DNA (82bp)
transferRNA Cys
LacPavin_0818_WC55_scaffold_56344_prodigal-single_trna_43
unknown

Not on your lists

comp(8298..8387)
-----------------
DNA (90bp)
transferRNA Ser
LacPavin_0818_WC55_scaffold_56344_prodigal-single_trna_42
unknown

Not on your lists

comp(8497..8578)
-----------------
DNA (82bp)
transferRNA Leu
LacPavin_0818_WC55_scaffold_56344_prodigal-single_trna_41
unknown

Not on your lists

comp(8606..8690)
-----------------
DNA (85bp)
transferRNA Ser
LacPavin_0818_WC55_scaffold_56344_prodigal-single_trna_40
unknown

Not on your lists

comp(8693..8777)
-----------------
DNA (85bp)
transferRNA Leu
LacPavin_0818_WC55_scaffold_56344_prodigal-single_trna_39
unknown

Not on your lists

comp(8805..8890)
-----------------
DNA (86bp)
transferRNA Ser
LacPavin_0818_WC55_scaffold_56344_prodigal-single_trna_38
unknown

Not on your lists

comp(8896..8970)
-----------------
DNA (75bp)
transferRNA Glu
LacPavin_0818_WC55_scaffold_56344_prodigal-single_trna_37
unknown

Not on your lists

comp(8976..9050)
-----------------
DNA (75bp)
transferRNA Glu
LacPavin_0818_WC55_scaffold_56344_prodigal-single_trna_36
unknown

Not on your lists

comp(9059..9133)
-----------------
DNA (75bp)
transferRNA Glu
LacPavin_0818_WC55_scaffold_56344_prodigal-single_trna_35
unknown

Not on your lists

comp(9159..9232)
-----------------
DNA (74bp)
transferRNA Ala
LacPavin_0818_WC55_scaffold_56344_prodigal-single_13

Not on your lists

9419..10093
-----------------
DNA (675bp)
protein (225aa)
Uncharacterized protein n=1 Tax=Oscillatoria nigro-viridis PCC 7112 RepID=K9VBC8_9CYAN
Marine sediment metagenome DNA, contig: S01H1_C01298 {ECO:0000313|EMBL:GAF69878.1}; Flags: Fragment;; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
hypothetical protein
LacPavin_0818_WC55_scaffold_56344_prodigal-single_14
unknown

Not on your lists

10379..10615
-----------------
DNA (237bp)
protein (79aa)

This feature has no annotations

LacPavin_0818_WC55_scaffold_56344_prodigal-single_15
unknown

Not on your lists

10709..11131
-----------------
DNA (423bp)
protein (141aa)

This feature has no annotations

LacPavin_0818_WC55_scaffold_56344_prodigal-single_16
Clostridium autoethanogenum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11276..12571)
-----------------
DNA (1296bp)
protein (432aa)
Transposase, IS605 OrfB family n=2 Tax=Clostridium RepID=U5RUK1_9CLOT
transposase, IS605 OrfB family
Transposase, IS605 OrfB family {ECO:0000313|EMBL:AGY76380.1}; TaxID=1341692 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium autoethanogenum DSM 10061.;"
LacPavin_0818_WC55_scaffold_56344_prodigal-single_17
Aeromonas phage PX29, T4likevirus, Caudovirales, Viruses

Not on your lists

comp(12630..13025)
-----------------
DNA (396bp)
protein (132aa)
Putative uncharacterized protein n=1 Tax=Aeromonas phage PX29 RepID=E5DQ18_9CAUD
Putative uncharacterized protein {ECO:0000313|EMBL:ADQ52804.1}; TaxID=926067 species="Viruses; dsDNA viruses, no RNA stage; Caudovirales; Myoviridae; Tevenvirinae; T4likevirus.;" source="Aeromonas phage PX29.;"
LacPavin_0818_WC55_scaffold_56344_prodigal-single_18

Not on your lists

comp(13058..13720)
-----------------
DNA (663bp)
protein (221aa)
Uncharacterized protein n=1 Tax=Persicivirga phage P12024S RepID=I6S6M4_9VIRU
Uncharacterized protein {ECO:0000313|EMBL:AFM54685.1}; TaxID=1168478 species="Viruses; dsDNA viruses, no RNA stage; unclassified dsDNA phages.;" source="Persicivirga phage P12024S.;"
putative ABC transporter
LacPavin_0818_WC55_scaffold_56344_prodigal-single_19
unknown

Not on your lists

comp(13704..13982)
-----------------
DNA (279bp)
protein (93aa)

This feature has no annotations

Displaying items 1-30 of 308 in total

View Taxonomy