ggKbase home page

S2_012_000_R2_scaffold_0_prodigal-single

Search features with annotation key words

Displaying items 1-30 of 1386 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S2_012_000_R2_scaffold_0_prodigal-single_1
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2..2782
DNA (2781bp) protein (927aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI0003489BD4
autotransporter-associated beta strand repeat protein
Autotransporter-associated beta strand repeat protein {ECO:0000313|EMBL:AGG89141.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
S2_012_000_R2_scaffold_0_prodigal-single_2
Herbaspirillum sp. TSA66, Herbaspirillum, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2892..3827
DNA (936bp) protein (312aa)
Uncharacterized protein n=1 Tax=Sphaerobacter thermophilus (strain DSM 20745 / S 6022) RepID=D1C7A6_SPHTD
Uncharacterized protein {ECO:0000313|EMBL:KIF81571.1}; TaxID=709839 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herbaspirillum.;" source="Herbaspirillum sp. TSA66.;"
hypothetical protein
S2_012_000_R2_scaffold_0_prodigal-single_3
Lysobacter dokdonensis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3881..4825)
DNA (945bp) protein (315aa)
recombinase RdgC n=1 Tax=Pseudoxanthomonas sp. GW2 RepID=UPI00031FB101
Recombination-associated protein RdgC {ECO:0000256|HAMAP-Rule:MF_00194, ECO:0000256|SAAS:SAAS00073315}; TaxID=1300345 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter dokdonensis DS-58.;"
exonuclease RdgC
S2_012_000_R2_scaffold_0_prodigal-single_4
unknown

Not on your lists

4912..6057
DNA (1146bp) protein (382aa)

This feature has no annotations

S2_012_000_R2_scaffold_0_prodigal-single_5
unknown

Not on your lists

comp(6054..7655)
DNA (1602bp) protein (534aa)

This feature has no annotations

S2_012_000_R2_scaffold_0_prodigal-single_6
unknown

Not on your lists

comp(7753..8475)
DNA (723bp) protein (241aa)

This feature has no annotations

S2_012_000_R2_scaffold_0_prodigal-single_7
Oceanithermus profundus, Oceanithermus, Thermales, Deinococci, Deinococcus-Thermus, Bacteria

Not on your lists

comp(8487..9965)
DNA (1479bp) protein (493aa)
Ankyrin n=1 Tax=Oceanithermus profundus (strain DSM 14977 / NBRC 100410 / VKM B-2274 / 506) RepID=E4UA08_OCEP5
ankyrin
Ankyrin {ECO:0000313|EMBL:ADR37385.1}; Flags: Precursor;; TaxID=670487 species="Bacteria; Deinococcus-Thermus; Deinococci; Thermales; Thermaceae; Oceanithermus.;" source="Oceanithermus profundus (strain DSM 14977 / NBRC 100410 / VKM B-2274 /; 506).;"
S2_012_000_R2_scaffold_0_prodigal-single_8
unknown

Not on your lists

comp(10005..11270)
DNA (1266bp) protein (422aa)

This feature has no annotations

S2_012_000_R2_scaffold_0_prodigal-single_9
unknown

Not on your lists

11364..11558
DNA (195bp) protein (65aa)

This feature has no annotations

S2_012_000_R2_scaffold_0_prodigal-single_10
[Oscillatoria] sp. PCC 6506, Kamptonema, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

11690..12232
DNA (543bp) protein (181aa)
Predicted protein n=1 Tax=Oscillatoria sp. PCC 6506 RepID=D8G811_9CYAN
Predicted protein {ECO:0000313|EMBL:CBN58751.1}; TaxID=272129 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Kamptonema.;" source="[Oscillatoria] sp. PCC 6506.;"
hypothetical protein
S2_012_000_R2_scaffold_0_prodigal-single_11
unknown

Not on your lists

comp(12269..12619)
DNA (351bp) protein (117aa)

This feature has no annotations

S2_012_000_R2_scaffold_0_prodigal-single_12
Acetobacter aceti, Acetobacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12630..13553)
DNA (924bp) protein (308aa)
Methyltransferase {ECO:0000256|RuleBase:RU362026}; EC=2.1.1.- {ECO:0000256|RuleBase:RU362026};; TaxID=435 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acetobacter; Acetobacter subgen. Acetobacter.;" source="Acetobacter aceti.;"
AatII methylase n=1 Tax=Acetobacter aceti RepID=P70724_ACEAC
DNA methylase N-4/N-6 domain-containing protein
S2_012_000_R2_scaffold_0_prodigal-single_13
unknown

Not on your lists

13752..14315
DNA (564bp) protein (188aa)

This feature has no annotations

S2_012_000_R2_scaffold_0_prodigal-single_14
unknown

Not on your lists

14470..14913
DNA (444bp) protein (148aa)

This feature has no annotations

S2_012_000_R2_scaffold_0_prodigal-single_15
unknown

Not on your lists

comp(14914..16305)
DNA (1392bp) protein (464aa)

This feature has no annotations

S2_012_000_R2_scaffold_0_prodigal-single_16
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16371..19313)
DNA (2943bp) protein (981aa)
UvrABC system protein A n=1 Tax=Stenotrophomonas maltophilia (strain R551-3) RepID=B4SP11_STRM5
UvrABC system protein A {ECO:0000256|HAMAP-Rule:MF_00205, ECO:0000256|SAAS:SAAS00088996}; Short=UvrA protein {ECO:0000256|HAMAP-Rule:MF_00205};; Excinuclease ABC subunit A {ECO:0000256|HAMAP-Rule:MF_00205}; TaxID=1451188 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia M30.;"
uvrA; excinuclease ABC subunit A
S2_012_000_R2_scaffold_0_prodigal-single_17
Pseudoxanthomonas spadix, Pseudoxanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19513..20640
DNA (1128bp) protein (376aa)
GGDEF domain-containing protein n=1 Tax=Pseudoxanthomonas spadix (strain BD-a59) RepID=G7UR52_PSEUP
diguanylate cyclase
GGDEF domain-containing protein {ECO:0000313|EMBL:AER55863.1}; TaxID=1045855 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Pseudoxanthomonas.;" source="Pseudoxanthomonas spadix (strain BD-a59).;"
S2_012_000_R2_scaffold_0_prodigal-single_18
unknown

Not on your lists

20726..21097
DNA (372bp) protein (124aa)

This feature has no annotations

S2_012_000_R2_scaffold_0_prodigal-single_19
unknown

Not on your lists

21150..21842
DNA (693bp) protein (231aa)

This feature has no annotations

S2_012_000_R2_scaffold_0_prodigal-single_20
unknown

Not on your lists

21916..22473
DNA (558bp) protein (186aa)

This feature has no annotations

S2_012_000_R2_scaffold_0_prodigal-single_21
Xanthomonas citri, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22503..24443)
DNA (1941bp) protein (647aa)
Prepilin-type N-terminal cleavage/methylation domain protein n=1 Tax=Stenotrophomonas sp. SKA14 RepID=B8KYX0_9GAMM
Prepilin-type N-terminal cleavage/methylation domain protein {ECO:0000313|EMBL:CEH61347.1}; TaxID=434928 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas citri pv. citri.;"
type IV pilus protein
S2_012_000_R2_scaffold_0_prodigal-single_22
unknown

Not on your lists

comp(24654..25811)
DNA (1158bp) protein (386aa)

This feature has no annotations

S2_012_000_R2_scaffold_0_prodigal-single_23
unknown

Not on your lists

comp(25811..26089)
DNA (279bp) protein (93aa)

This feature has no annotations

S2_012_000_R2_scaffold_0_prodigal-single_24
RHI_RIF_OD1_01_48_17, RIF-OD1-1, Parcubacteria, Bacteria

Not on your lists

comp(26171..26725)
DNA (555bp) protein (185aa)
Peptide methionine sulfoxide reductase MsrA n=1 Tax=Dehalococcoides ethenogenes (strain 195) RepID=Q3Z745_DEHE1
methionine sulfoxide reductase A
Tax=RIFCSPHIGHO2_12_FULL_RIF_OD1_01_48_17_curated
S2_012_000_R2_scaffold_0_prodigal-single_25
Roseomonas cervicalis, Roseomonas, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27011..28255
DNA (1245bp) protein (415aa)
Threonine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00184, ECO:0000256|SAAS:SAAS00106033}; EC=6.1.1.3 {ECO:0000256|HAMAP-Rule:MF_00184, ECO:0000256|SAAS:SAAS00106033};; Threonyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00184}; TaxID=525371 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Roseomonas.;" source="Roseomonas cervicalis ATCC 49957.;"
hypothetical protein n=1 Tax=Scytonema hofmanni RepID=UPI000347DAEC
thrS; threonyl-tRNA synthetase
S2_012_000_R2_scaffold_0_prodigal-single_26
unknown

Not on your lists

comp(28298..28627)
DNA (330bp) protein (110aa)

This feature has no annotations

S2_012_000_R2_scaffold_0_prodigal-single_27
unknown

Not on your lists

28770..29774
DNA (1005bp) protein (335aa)

This feature has no annotations

S2_012_000_R2_scaffold_0_prodigal-single_28
unknown

Not on your lists

29783..30826
DNA (1044bp) protein (348aa)

This feature has no annotations

S2_012_000_R2_scaffold_0_prodigal-single_29
unknown

Not on your lists

30838..31908
DNA (1071bp) protein (357aa)

This feature has no annotations

S2_012_000_R2_scaffold_0_prodigal-single_30

Not on your lists

32168..33112
DNA (945bp) protein (315aa)
deoxycytidylate deaminase (EC:3.5.4.12)
Uncharacterized protein {ECO:0000313|EMBL:KKN08837.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
Deoxycytidylate deaminase id=3086539 bin=GWB1_Spirochaetes_59_5 species=Frateuria aurantia genus=Frateuria taxon_order=Xanthomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWB1_Spirochaetes_59_5 organism_group=Spirochaetes
Displaying items 1-30 of 1386 in total

View Taxonomy