ggKbase home page

S2_012_000_R2_scaffold_0_prodigal-single

Search features with annotation key words

Displaying items 181-210 of 1386 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S2_012_000_R2_scaffold_0_prodigal-single_180
unknown

Not on your lists

178072..178728
DNA (657bp) protein (219aa)

This feature has no annotations

S2_012_000_R2_scaffold_0_prodigal-single_181
Pseudomonas mandelii, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(178735..180276)
DNA (1542bp) protein (514aa)
DNA helicase {ECO:0000256|SAAS:SAAS00145970}; EC=3.6.4.12 {ECO:0000256|SAAS:SAAS00145970};; TaxID=1147786 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas mandelii JR-1.;"
putative DNA helicase protein n=1 Tax=Pseudomonas mandelii RepID=UPI00029B5309
DNA methylase
S2_012_000_R2_scaffold_0_prodigal-single_182
unknown

Not on your lists

comp(180317..181900)
DNA (1584bp) protein (528aa)

This feature has no annotations

S2_012_000_R2_scaffold_0_prodigal-single_183
Lysobacter defluvii, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

182053..182691
DNA (639bp) protein (213aa)
kinase n=1 Tax=Stenotrophomonas maltophilia RepID=UPI00030CFD1F
Kinase {ECO:0000313|EMBL:KGO98324.1}; TaxID=1385515 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter defluvii IMMIB APB-9 = DSM 18482.;"
hypothetical protein
S2_012_000_R2_scaffold_0_prodigal-single_184
unknown

Not on your lists

comp(182674..182901)
DNA (228bp) protein (76aa)

This feature has no annotations

S2_012_000_R2_scaffold_0_prodigal-single_185
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

183040..183549
DNA (510bp) protein (170aa)
Fimbrial protein n=1 Tax=Stenotrophomonas maltophilia SKK35 RepID=M5CLT4_STEMA
Fimbrial protein {ECO:0000313|EMBL:CCP10835.1}; TaxID=1118156 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia SKK35.;"
pre-pilin like leader sequence
S2_012_000_R2_scaffold_0_prodigal-single_186
Pseudoxanthomonas suwonensis, Pseudoxanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

183552..184001
DNA (450bp) protein (150aa)
pilus modification protein PilV n=1 Tax=Stenotrophomonas maltophilia RepID=UPI0002F66B6B
Pilus assembly protein PilV {ECO:0000313|EMBL:AKC87476.1}; TaxID=314722 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Pseudoxanthomonas.;" source="Pseudoxanthomonas suwonensis.;"
pilV; pre-pilin leader sequence
S2_012_000_R2_scaffold_0_prodigal-single_187
Pseudoxanthomonas suwonensis, Pseudoxanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

184005..185129
DNA (1125bp) protein (375aa)
PilW-related protein n=1 Tax=Stenotrophomonas maltophilia AU12-09 RepID=M5TN64_STEMA
Uncharacterized protein {ECO:0000313|EMBL:AKC87477.1}; TaxID=314722 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Pseudoxanthomonas.;" source="Pseudoxanthomonas suwonensis.;"
hypothetical protein
S2_012_000_R2_scaffold_0_prodigal-single_188
Xanthomonas campestris, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

185131..185562
DNA (432bp) protein (144aa)
PilX protein n=2 Tax=Xanthomonas campestris pv. campestris RepID=Q4UW83_XANC8
PilX protein
PilX protein {ECO:0000313|EMBL:AAM41766.1}; TaxID=190485 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas campestris pv. campestris (strain ATCC 33913 / DSM 3586 /; NCPPB 528 / LMG 568 / P 25).;"
S2_012_000_R2_scaffold_0_prodigal-single_189
BJP_IG2103_SUB10_Xanthomonadales_61_45, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

185571..189455
DNA (3885bp) protein (1295aa)
pilus assembly protein n=1 Tax=Arenimonas oryziterrae RepID=UPI0003B60D1C
PilY1 protein
Tax=BJP_IG2103_SUB10_Xanthomonadales_61_45
S2_012_000_R2_scaffold_0_prodigal-single_190
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

189452..189853
DNA (402bp) protein (134aa)
Type IV pilin PilE n=1 Tax=Stenotrophomonas maltophilia AU12-09 RepID=M5TNA0_STEMA
Type IV pilin PilE {ECO:0000313|EMBL:EMI50640.1}; TaxID=1235458 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia AU12-09.;"
type IV pilin PilE
S2_012_000_R2_scaffold_0_prodigal-single_191
unknown

Not on your lists

189993..190562
DNA (570bp) protein (190aa)

This feature has no annotations

S2_012_000_R2_scaffold_0_prodigal-single_192
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

190629..192341
DNA (1713bp) protein (571aa)
C-terminal processing peptidase n=3 Tax=Rhodanobacter denitrificans RepID=M4NCQ8_9GAMM
C-terminal processing peptidase
C-terminal processing peptidase {ECO:0000313|EMBL:AGG87577.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
S2_012_000_R2_scaffold_0_prodigal-single_193
unknown

Not on your lists

comp(192389..193318)
DNA (930bp) protein (310aa)

This feature has no annotations

S2_012_000_R2_scaffold_0_prodigal-single_194
unknown

Not on your lists

comp(193349..194281)
DNA (933bp) protein (311aa)

This feature has no annotations

S2_012_000_R2_scaffold_0_prodigal-single_195
unknown

Not on your lists

comp(194379..194855)
DNA (477bp) protein (159aa)

This feature has no annotations

S2_012_000_R2_scaffold_0_prodigal-single_196
unknown

Not on your lists

comp(194928..195530)
DNA (603bp) protein (201aa)

This feature has no annotations

S2_012_000_R2_scaffold_0_prodigal-single_197
unknown

Not on your lists

comp(195684..195902)
DNA (219bp) protein (73aa)

This feature has no annotations

S2_012_000_R2_scaffold_0_prodigal-single_198
unknown

Not on your lists

comp(195956..196159)
DNA (204bp) protein (68aa)

This feature has no annotations

S2_012_000_R2_scaffold_0_prodigal-single_199
unknown

Not on your lists

196255..196800
DNA (546bp) protein (182aa)

This feature has no annotations

S2_012_000_R2_scaffold_0_prodigal-single_200
Arenimonas oryziterrae, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(196784..197401)
DNA (618bp) protein (206aa)
Ribonuclease HII {ECO:0000256|HAMAP-Rule:MF_00052, ECO:0000256|SAAS:SAAS00016879}; Short=RNase HII {ECO:0000256|HAMAP-Rule:MF_00052};; EC=3.1.26.4 {ECO:0000256|HAMAP-Rule:MF_00052, ECO:0000256|SAAS:SAAS00016872};; TaxID=1121015 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas oryziterrae DSM 21050 = YC6267.;"
ribonuclease HII (EC:3.1.26.4)
ribonuclease HII n=1 Tax=Arenimonas oryziterrae RepID=UPI0003B59E98
S2_012_000_R2_scaffold_0_prodigal-single_201
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

197610..198002
DNA (393bp) protein (131aa)
Transport-associated protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VV74_9GAMM
Transport-associated protein {ECO:0000313|EMBL:EIL91115.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
putative periplasmic or secreted lipoprotein
S2_012_000_R2_scaffold_0_prodigal-single_202
Burkholderia gladioli, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(198087..198638)
DNA (552bp) protein (184aa)
Uncharacterized protein n=1 Tax=Burkholderia gladioli (strain BSR3) RepID=F2LSE7_BURGS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEA65743.1}; TaxID=999541 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia gladioli (strain BSR3).;"
S2_012_000_R2_scaffold_0_prodigal-single_203
Arenimonas malthae, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(198692..201295)
DNA (2604bp) protein (868aa)
Chaperone protein ClpB {ECO:0000256|RuleBase:RU362034}; TaxID=1384054 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas malthae CC-JY-1.;"
Chaperone protein ClpB id=2463881 bin=GWF1_Xanthomonadales_69_6 species=unknown genus=Xanthomonas taxon_order=Xanthomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF1_Xanthomonadales_69_6 organism_group=Gammaproteobacteria
protein disaggregation chaperone
S2_012_000_R2_scaffold_0_prodigal-single_204
unknown

Not on your lists

201492..202679
DNA (1188bp) protein (396aa)

This feature has no annotations

S2_012_000_R2_scaffold_0_prodigal-single_205
unknown

Not on your lists

comp(202708..203040)
DNA (333bp) protein (111aa)

This feature has no annotations

S2_012_000_R2_scaffold_0_prodigal-single_206
unknown

Not on your lists

comp(203040..203516)
DNA (477bp) protein (159aa)

This feature has no annotations

S2_012_000_R2_scaffold_0_prodigal-single_207
unknown

Not on your lists

203655..204185
DNA (531bp) protein (177aa)

This feature has no annotations

S2_012_000_R2_scaffold_0_prodigal-single_208
unknown

Not on your lists

204252..204854
DNA (603bp) protein (201aa)

This feature has no annotations

S2_012_000_R2_scaffold_0_prodigal-single_209
Acinetobacter phage Ac42, T4likevirus, Caudovirales, Viruses

Not on your lists

205125..205622
DNA (498bp) protein (166aa)
hypothetical protein n=1 Tax=Candidatus Odyssella thessalonicensis RepID=UPI000225B4CA
Putative NUDIX hydrolase {ECO:0000313|EMBL:ADI96453.1}; TaxID=762660 species="Viruses; dsDNA viruses, no RNA stage; Caudovirales; Myoviridae; Tevenvirinae; T4likevirus.;" source="Acinetobacter phage Ac42.;"
phosphatase
Displaying items 181-210 of 1386 in total

View Taxonomy