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term1_saliva_scaffold_5_curated_closed_gap_prodigal-single

Search features with annotation key words

Displaying items 121-150 of 246 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
term1_saliva_scaffold_5_curated_closed_gap_prodigal-single_121
Bacillus phage 0305phi8-36, Caudovirales, Viruses

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comp(112890..113825)
DNA (936bp) protein (312aa)
RecA n=1 Tax=Bacillus phage 0305phi8-36 RepID=A7KV38_9CAUD
RecA {ECO:0000313|EMBL:ABS83593.1}; TaxID=458639 species="Viruses; dsDNA viruses, no RNA stage; Caudovirales; Myoviridae.;" source="Bacillus phage 0305phi8-36.;"
recA; recombinase A
term1_saliva_scaffold_5_curated_closed_gap_prodigal-single_122
Chlamydia trachomatis, Chlamydia, Chlamydiales, Chlamydiia, Chlamydiae, Bacteria

Not on your lists

comp(114130..115071)
DNA (942bp) protein (314aa)
hypothetical protein n=1 Tax=Alkalibacillus haloalkaliphilus RepID=UPI00031EE073
Ribonucleotide-diphosphate reductase subunit alpha {ECO:0000313|EMBL:CRH65981.1}; TaxID=813 species="Bacteria; Chlamydiae; Chlamydiales; Chlamydiaceae; Chlamydia/Chlamydophila group; Chlamydia.;" source="Chlamydia trachomatis.;"
hypothetical protein
term1_saliva_scaffold_5_curated_closed_gap_prodigal-single_123
unknown

Not on your lists

comp(115138..115389)
DNA (252bp) protein (84aa)

This feature has no annotations

term1_saliva_scaffold_5_curated_closed_gap_prodigal-single_124
unknown

Not on your lists

comp(115382..115714)
DNA (333bp) protein (111aa)

This feature has no annotations

term1_saliva_scaffold_5_curated_closed_gap_prodigal-single_125
Clostridium sp. NCR, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(115707..117383)
DNA (1677bp) protein (559aa)
DNA gyrase subunit A {ECO:0000256|HAMAP-Rule:MF_01897}; EC=5.99.1.3 {ECO:0000256|HAMAP-Rule:MF_01897};; TaxID=1538552 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. NCR.;"
DNA gyrase subunit A (EC:5.99.1.3)
DNA gyrase subunit A n=1 Tax=Clostridium bifermentans ATCC 638 RepID=T4VGF6_CLOBI
term1_saliva_scaffold_5_curated_closed_gap_prodigal-single_126
Megasphaera sp. UPII 135-E, Megasphaera, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

comp(117511..118614)
DNA (1104bp) protein (368aa)
Transposase, IS605 OrfB family n=1 Tax=Megasphaera sp. UPII 135-E RepID=F9MPS4_9FIRM
Transposase, IS605 OrfB family {ECO:0000313|EMBL:EGS32847.1}; TaxID=1000569 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Megasphaera.;" source="Megasphaera sp. UPII 135-E.;"
IS605 OrfB family transposase
term1_saliva_scaffold_5_curated_closed_gap_prodigal-single_127
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(119153..119758)
DNA (606bp) protein (202aa)
DNA gyrase subunit A {ECO:0000256|HAMAP-Rule:MF_01897}; EC=5.99.1.3 {ECO:0000256|HAMAP-Rule:MF_01897};; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
DNA gyrase subunit A n=1 Tax=Roseburia sp. CAG:18 RepID=R5VDK1_9FIRM
DNA gyrase, A subunit
term1_saliva_scaffold_5_curated_closed_gap_prodigal-single_128
Clostridium sartagoforme, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(119998..120684)
DNA (687bp) protein (229aa)
Uncharacterized protein n=1 Tax=Clostridium sartagoforme AAU1 RepID=R9C7T5_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EOR25328.1}; TaxID=1202534 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sartagoforme AAU1.;"
term1_saliva_scaffold_5_curated_closed_gap_prodigal-single_129
unknown

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comp(120722..120811)
DNA (90bp) protein (30aa)

This feature has no annotations

term1_saliva_scaffold_5_curated_closed_gap_prodigal-single_130
RIFOXYA2_FULL_OD1_Magasanikbacteria_44_8_curated, Magasanikbacteria, Parcubacteria, Bacteria

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comp(120874..121167)
DNA (294bp) protein (98aa)
DNA gyrase subunit A id=4470759 bin=GWF2_Bacteroidetes_35_48 species=Odoribacter laneus genus=Odoribacter taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWF2_Bacteroidetes_35_48 organism_group=Bacteroidetes organism_desc=a81
DNA gyrase subunit A
Tax=RIFOXYA2_FULL_OD1_Magasanikbacteria_44_8_curated
term1_saliva_scaffold_5_curated_closed_gap_prodigal-single_131
BJP_IG2102_Clostridiales_34_350, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(121160..121804)
DNA (645bp) protein (215aa)
Single-strand binding protein/Primosomal replication protein n n=1 Tax=Faecalibacterium sp. CAG:74 RepID=R7I767_9FIRM
single-strand binding protein
Tax=BJP_IG2102_Clostridiales_34_350
term1_saliva_scaffold_5_curated_closed_gap_prodigal-single_132
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(121804..122400)
DNA (597bp) protein (199aa)
DNA gyrase subunit B {ECO:0000256|HAMAP-Rule:MF_01898, ECO:0000256|RuleBase:RU003363}; EC=5.99.1.3 {ECO:0000256|HAMAP-Rule:MF_01898, ECO:0000256|RuleBase:RU003363};; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
DNA gyrase subunit B (EC:5.99.1.3)
DNA gyrase subunit B n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RT25_9FIRM
term1_saliva_scaffold_5_curated_closed_gap_prodigal-single_133
Burkholderia dolosa, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(122525..123166)
DNA (642bp) protein (214aa)
endonuclease n=1 Tax=Ureibacillus thermosphaericus RepID=UPI0002ECA351
AP2 domain protein
AP2 domain protein {ECO:0000313|EMBL:AJY13211.1}; TaxID=350701 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia cepacia complex.;" source="Burkholderia dolosa AU0158.;"
term1_saliva_scaffold_5_curated_closed_gap_prodigal-single_134
Porphyromonas gingivalis, Porphyromonas, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(123316..124656)
DNA (1341bp) protein (447aa)
DNA gyrase subunit B {ECO:0000256|HAMAP-Rule:MF_01898, ECO:0000256|RuleBase:RU003363}; EC=5.99.1.3 {ECO:0000256|HAMAP-Rule:MF_01898, ECO:0000256|RuleBase:RU003363};; TaxID=431947 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Porphyromonas.;" source="Porphyromonas gingivalis (strain ATCC 33277 / DSM 20709 / JCM 12257).;"
DNA gyrase subunit B n=12 Tax=Porphyromonas gingivalis RepID=B2RHT7_PORG3
gyrB; DNA gyrase subunit B
term1_saliva_scaffold_5_curated_closed_gap_prodigal-single_135
unknown

Not on your lists

comp(124671..125060)
DNA (390bp) protein (130aa)

This feature has no annotations

term1_saliva_scaffold_5_curated_closed_gap_prodigal-single_136
Macrococcus caseolyticus, Macrococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(125218..125664)
DNA (447bp) protein (149aa)
Single-stranded DNA-binding protein n=1 Tax=Macrococcus caseolyticus (strain JCSC5402) RepID=B9EBK8_MACCJ
hypothetical protein
Single-stranded DNA-binding protein {ECO:0000256|HAMAP-Rule:MF_00984, ECO:0000256|PIRNR:PIRNR002070}; Short=SSB {ECO:0000256|HAMAP-Rule:MF_00984};; TaxID=458233 species="Bacteria; Firmicutes; Bacilli; Bacillales; Macrococcus.;" source="Macrococcus caseolyticus (strain JCSC5402).;"
term1_saliva_scaffold_5_curated_closed_gap_prodigal-single_137
unknown

Not on your lists

comp(125816..126265)
DNA (450bp) protein (150aa)

This feature has no annotations

term1_saliva_scaffold_5_curated_closed_gap_prodigal-single_138
Caldicellulosiruptor bescii, Caldicellulosiruptor, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(126872..128206)
DNA (1335bp) protein (445aa)
ATP-dependent Clp protease ATP-binding subunit ClpX n=1 Tax=Caldicellulosiruptor bescii (strain ATCC BAA-1888 / DSM 6725 / Z-1320) RepID=CLPX_CALBD
clpX; ATP-dependent protease ATP-binding subunit ClpX
ATP-dependent Clp protease ATP-binding subunit ClpX {ECO:0000255|HAMAP-Rule:MF_00175}; TaxID=521460 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacterales Family III. Incertae Sedis; Caldicellulosiruptor.;" source="Caldicellulosiruptor bescii (strain ATCC BAA-1888 / DSM 6725 / Z-1320); (Anaerocellum thermophilum).;"
term1_saliva_scaffold_5_curated_closed_gap_prodigal-single_139
Butyrivibrio proteoclasticus, Butyrivibrio, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(128203..128742)
DNA (540bp) protein (180aa)
clpP; ATP-dependent Clp protease proteolytic subunit (EC:3.4.21.92)
ATP-dependent Clp protease proteolytic subunit {ECO:0000256|HAMAP-Rule:MF_00444, ECO:0000256|RuleBase:RU003567}; EC=3.4.21.92 {ECO:0000256|HAMAP-Rule:MF_00444, ECO:0000256|RuleBase:RU000549};; Endopeptidase Clp {ECO:0000256|HAMAP-Rule:MF_00444}; TaxID=515622 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Butyrivibrio.;" source="Butyrivibrio proteoclasticus (strain ATCC 51982 / DSM 14932 / B316); (Clostridium proteoclasticum).;"
ATP-dependent Clp protease proteolytic subunit n=1 Tax=Clostridiales bacterium NK3B98 RepID=UPI0003B48AC2
term1_saliva_scaffold_5_curated_closed_gap_prodigal-single_140
Veillonella montpellierensis, Veillonella, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

comp(129346..130008)
DNA (663bp) protein (221aa)
Uncharacterized protein n=1 Tax=Veillonella sp. CAG:933 RepID=R5C1B0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:KGF47558.1}; TaxID=1401067 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Veillonella.;" source="Veillonella montpellierensis DNF00314.;"
term1_saliva_scaffold_5_curated_closed_gap_prodigal-single_141
unknown

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comp(130049..130456)
DNA (408bp) protein (136aa)

This feature has no annotations

term1_saliva_scaffold_5_curated_closed_gap_prodigal-single_142
unknown

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comp(130459..130701)
DNA (243bp) protein (81aa)

This feature has no annotations

term1_saliva_scaffold_5_curated_closed_gap_prodigal-single_143
unknown

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comp(130714..130953)
DNA (240bp) protein (80aa)

This feature has no annotations

term1_saliva_scaffold_5_curated_closed_gap_prodigal-single_144
unknown

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comp(130956..131171)
DNA (216bp) protein (72aa)

This feature has no annotations

term1_saliva_scaffold_5_curated_closed_gap_prodigal-single_145
unknown

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comp(131300..131794)
DNA (495bp) protein (165aa)

This feature has no annotations

term1_saliva_scaffold_5_curated_closed_gap_prodigal-single_trna_6
unknown

Not on your lists

comp(131859..131935)
DNA (77bp)
transferRNA Asn
term1_saliva_scaffold_5_curated_closed_gap_prodigal-single_146
unknown

Not on your lists

comp(132391..132669)
DNA (279bp) protein (93aa)

This feature has no annotations

term1_saliva_scaffold_5_curated_closed_gap_prodigal-single_trna_5
unknown

Not on your lists

comp(132916..133002)
DNA (87bp)
transferRNA Leu
term1_saliva_scaffold_5_curated_closed_gap_prodigal-single_147
Coprobacillus sp. 3_3_56FAA, Coprobacillus, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(133830..134507)
DNA (678bp) protein (226aa)
Uncharacterized protein n=2 Tax=Coprobacillus RepID=C3RQF9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHM88348.1}; TaxID=665941 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Coprobacillus.;" source="Coprobacillus sp. 3_3_56FAA.;"
putative IS transposase
term1_saliva_scaffold_5_curated_closed_gap_prodigal-single_148
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(134452..134739)
DNA (288bp) protein (96aa)
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 2_1_58FAA RepID=F7K1U8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGN43060.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
IS transposase
Displaying items 121-150 of 246 in total

View Taxonomy