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Ig5770_scaffold_2371

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Displaying 25 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
Ig5770_scaffold_2371_1
unknown

Not on your lists

1..444
DNA (444bp) protein (148aa)

This feature has no annotations

Ig5770_scaffold_2371_2
CG_CPR04_01, CG_CPR04, Bacteria

Not on your lists

470..1636
DNA (1167bp) protein (389aa)
transmembrane_regions id=5803586 bin=OD1_GWC2_34_28 species=PER_GWF2_33_10 genus=PER_GWF2_33_10 taxon_order=PER_GWF2_33_10 taxon_class=PER_GWF2_33_10 phylum=PER tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
Tax=CG_CPR04_01
Ig5770_scaffold_2371_3
unknown

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2468..2902
DNA (435bp) protein (145aa)

This feature has no annotations

Ig5770_scaffold_2371_4
Parcubacteria bacterium GW2011_GWD2_40_9, Parcubacteria, Bacteria

Not on your lists

2953..3309
DNA (357bp) protein (119aa)
hypothetical protein n=1 Tax=Parcubacteria bacterium SCGC AAA010-E09 RepID=UPI000382823D
Sigma 54 modulation protein/ribosomal protein S30EA {ECO:0000313|EMBL:KKR82329.1}; TaxID=1618943 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWD2_40_9.;"
Ig5770_scaffold_2371_5
R_OD1_41_19, Parcubacteria, Bacteria

Not on your lists

3324..3929
DNA (606bp) protein (202aa)
hypothetical protein n=1 Tax=Parcubacteria bacterium SCGC AAA010-E09 RepID=UPI000362AC96
hypothetical protein
Tax=RIFCSPHIGHO2_02_OD1_41_19_curated
Ig5770_scaffold_2371_6
R_OD1_Yanofskybacteria_41_29, Yanofskybacteria, Parcubacteria, Bacteria

Not on your lists

comp(3975..4637)
DNA (663bp) protein (221aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2BSJ1_9BACT
hypothetical protein
Tax=RIFCSPHIGHO2_02_FULL_OD1_Yanofskybacteria_41_29_curated
Ig5770_scaffold_2371_7
GWA2_OD1_38_27, Parcubacteria, Bacteria

Not on your lists

4985..6700
DNA (1716bp) protein (572aa)
Uncharacterized protein {ECO:0000313|EMBL:KKQ68359.1}; TaxID=1618812 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWA2_38_27.;"
id=3736972 bin=GWC2_OD1_43_27 species=GWE2_OD1_ACD81_47_12 genus=GWE2_OD1_ACD81_47_12 taxon_order=GWE2_OD1_ACD81_47_12 taxon_class=GWE2_OD1_ACD81_47_12 phylum=OD1 tax=GWC2_OD1_43_27 organism_group=OD1 (Parcubacteria) organism_desc=Same as C1_43_61 and D1_43_18 Curated this version (complete)
Ig5770_scaffold_2371_8

Not on your lists

comp(6683..7591)
DNA (909bp) protein (303aa)
methionyl-tRNA formyltransferase (EC:2.1.2.9); K00604 methionyl-tRNA formyltransferase [EC:2.1.2.9] id=5803612 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
Methionyl-tRNA formyltransferase {ECO:0000313|EMBL:KKR59187.1}; TaxID=1618924 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWC2_40_31.;"
methionyl-tRNA formyltransferase
Ig5770_scaffold_2371_9
unknown

Not on your lists

comp(7769..7942)
DNA (174bp) protein (58aa)

This feature has no annotations

Ig5770_scaffold_2371_10
RLO_RIF_OD1_02_44_15, RIF-OD1-2, Parcubacteria, Bacteria

Not on your lists

8105..8776
DNA (672bp) protein (224aa)
hypothetical protein n=1 Tax=Parcubacteria bacterium SCGC AAA011-A09 RepID=UPI00037C730D
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_RIF_OD1_02_44_15_curated
Ig5770_scaffold_2371_11
GWB1_OD1_43_8, Parcubacteria, Bacteria

Not on your lists

comp(8809..9306)
DNA (498bp) protein (166aa)
peptide deformylase (EC:3.5.1.88)
Uncharacterized protein n=1 Tax=candidate division OD1 bacterium RAAC4_OD1_1 RepID=V7Q076_9BACT
Peptide deformylase {ECO:0000313|EMBL:KKT21302.1}; TaxID=1618874 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWB1_43_8.;"
Ig5770_scaffold_2371_12
GWB1_OD1_43_8, Parcubacteria, Bacteria

Not on your lists

comp(9319..11190)
DNA (1872bp) protein (624aa)
primosomal protein N'; K04066 primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:3.6.4.-] id=5227121 bin=RAAC4_OD1 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=RAAC4_OD1 organism_group=OD1 (Parcubacteria)
Primosomal protein N {ECO:0000313|EMBL:KKT21300.1}; TaxID=1618874 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWB1_43_8.;"
primosomal protein N'
Ig5770_scaffold_2371_13
RLO_OD1_41_13, Parcubacteria, Bacteria

Not on your lists

comp(11192..12001)
DNA (810bp) protein (270aa)
hypothetical protein n=1 Tax=Candidatus Paceibacter normanii SCGC AAA255-P19 RepID=UPI0003798341
Tax=RIFCSPLOWO2_12_FULL_OD1_41_13_curated
Ig5770_scaffold_2371_14
GWB1_OD1_43_8, Parcubacteria, Bacteria

Not on your lists

12116..12430
DNA (315bp) protein (105aa)
hypothetical protein n=1 Tax=Parcubacteria bacterium SCGC AAA011-A09 RepID=UPI0003644974
Transcriptional regulator, PaaX family {ECO:0000313|EMBL:KKT21396.1}; TaxID=1618874 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWB1_43_8.;"
Ig5770_scaffold_2371_15
GWB1_OD1_43_8, Parcubacteria, Bacteria

Not on your lists

12991..14295
DNA (1305bp) protein (435aa)
hypothetical protein n=1 Tax=Parcubacteria bacterium SCGC AAA040-L21 RepID=UPI0003699FC0
Transcriptional regulator, XRE family {ECO:0000313|EMBL:KKT18648.1}; TaxID=1618874 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWB1_43_8.;"
UDP-N-acetylglucosamine 1-carboxyvinyltransferase
Ig5770_scaffold_2371_16
RLO_OD1_Giovannonibacteria_43_11c, Giovannonibacteria, Parcubacteria, Bacteria

Not on your lists

14280..15293
DNA (1014bp) protein (338aa)
Uncharacterized protein n=1 Tax=candidate division OD1 bacterium RAAC4_OD1_1 RepID=V7PYT3_9BACT rbh
cell shape determining protein, MreB/Mrl family
Tax=RIFCSPLOWO2_12_FULL_OD1_Giovannonibacteria_43_11c_curated
Ig5770_scaffold_2371_17
unknown

Not on your lists

15413..15649
DNA (237bp) protein (79aa)

This feature has no annotations

Ig5770_scaffold_2371_18
R_OD1_Wolfebacteria_41_13b, Wolfebacteria, Parcubacteria, Bacteria

Not on your lists

15856..16428
DNA (573bp) protein (191aa)
hypothetical protein n=1 Tax=Parcubacteria bacterium SCGC AAA010-E09 RepID=UPI00037781BA
membrane protein
Tax=RIFCSPLOWO2_02_FULL_OD1_Wolfebacteria_41_13b_curated
Ig5770_scaffold_2371_19
GWB1_OD1_43_8, Parcubacteria, Bacteria

Not on your lists

comp(16412..17248)
DNA (837bp) protein (279aa)
apurinic endonuclease Apn1 (EC:3.1.21.2); K01151 deoxyribonuclease IV [EC:3.1.21.2] id=8578 bin=ACD15 species=ACD15 genus=ACD15 taxon_order=ACD15 taxon_class=ACD15 phylum=OD1-i tax=ACD15 organism_group=OD1-i organism_desc=OD1-i
Putative endonuclease 4 {ECO:0000313|EMBL:KKT21059.1}; TaxID=1618874 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWB1_43_8.;"
apurinic endonuclease Apn1
Ig5770_scaffold_2371_20
GWF2_OD1_37_7, Moranbacteria, Parcubacteria, Bacteria

Not on your lists

17300..17833
DNA (534bp) protein (178aa)
CDP-diacylglycerol/glycerol-3-phosphate3-phospha tidyltransferase id=3152158 bin=GWC1_OD1_38_17 species=Desulfomicrobium baculatum genus=Desulfomicrobium taxon_order=Desulfovibrionales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC1_OD1_38_17 organism_group=OD1 (Parcubacteria) organism_desc=Good + Candidate for curation
CDP-diacylglycerol/glycerol-3-phosphate3-phospha tidyltransferase {ECO:0000313|EMBL:KKQ39366.1}; TaxID=1618725 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Moranbacteria) bacterium GW2011_GWF2_37_7.;"
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase
Ig5770_scaffold_2371_21
RBG_13_RIF_OD1_07_42_11_curated, RIF-OD1-7, Parcubacteria, Bacteria

Not on your lists

17884..18747
DNA (864bp) protein (288aa)
hypothetical protein n=1 Tax=Candidatus Paceibacter normanii SCGC AAA255-P19 RepID=UPI000362D291
putative GTP-binding protein
Tax=RBG_13_RIF_OD1_07_42_11_curated
Ig5770_scaffold_2371_22
R_OD1_Giovannonibacteria_45_23, Giovannonibacteria, Parcubacteria, Bacteria

Not on your lists

comp(18858..19517)
DNA (660bp) protein (220aa)
paaX; repressor in ring oxydation complex/phenylacetic acid degradation pathway related protein (PaaX); K02616 phenylacetic acid degradation operon negative regulatory protein id=3267 bin=ACD11 species=ACD11 genus=ACD11 taxon_order=ACD11 taxon_class=ACD11 phylum=OD1-i tax=ACD11 organism_group=OD1-i organism_desc=OD1-i
phaN; repressor
Tax=RIFCSPHIGHO2_01_FULL_OD1_Giovannonibacteria_45_23_curated
Ig5770_scaffold_2371_23
GWA2_OD1_42_18, Parcubacteria, Bacteria

Not on your lists

19658..21220
DNA (1563bp) protein (521aa)
RND family efflux transporter MFP subunit {ECO:0000313|EMBL:KKS45366.1}; TaxID=1618821 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWA2_42_18.;"
RND family efflux transporter MFP subunit id=5803398 bin=OD1_GWC2_34_28 species=PERA2_38_36 genus=PERA2_38_36 taxon_order=PERA2_38_36 taxon_class=PERA2_38_36 phylum=PER tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
RND family efflux transporter, MFP subunit
Ig5770_scaffold_2371_24
GWC2_OD1_41_9, Yanofskybacteria, Parcubacteria, Bacteria

Not on your lists

21328..22047
DNA (720bp) protein (240aa)
Uncharacterized protein {ECO:0000313|EMBL:KKS25827.1}; TaxID=1619029 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Yanofskybacteria) bacterium GW2011_GWC2_41_9.;"
ABC transporter-like protein; K02003 putative ABC transport system ATP-binding protein id=5802298 bin=PER_GWA2_38_35 species=PERA2_38_36 genus=PERA2_38_36 taxon_order=PERA2_38_36 taxon_class=PERA2_38_36 phylum=PER tax=PER_GWA2_38_35 organism_group=PER (Peregrinibacteria) organism_desc=This is the curated version (7 contigs can be represented as 5 scaffolds)
antimicrobial peptide ABC transporter ATPase
Ig5770_scaffold_2371_25
RBG_13_OD1_Wolfebacteria_41_7_curated, Wolfebacteria, Parcubacteria, Bacteria

Not on your lists

22050..22409
DNA (360bp) protein (120aa)
hypothetical protein; K02004 putative ABC transport system permease protein id=5802299 bin=PER_GWA2_38_35 species=PERA2_38_36 genus=PERA2_38_36 taxon_order=PERA2_38_36 taxon_class=PERA2_38_36 phylum=PER tax=PER_GWA2_38_35 organism_group=PER (Peregrinibacteria) organism_desc=This is the curated version (7 contigs can be represented as 5 scaffolds)
hypothetical protein
Tax=RBG_13_OD1_Wolfebacteria_41_7_curated
Displaying 25 items

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