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js4906-20-3_S2_scaffold_42

Search features with annotation key words

Displaying items 1-30 of 97 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
js4906-20-3_S2_scaffold_42_1
Acinetobacter sp. CAG:196, Melainabacteria, Bacteria

Not on your lists

230..1069
DNA (840bp) protein (280aa)
Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase {ECO:0000256|SAAS:SAAS00064156}; EC=2.3.1.129 {ECO:0000256|SAAS:SAAS00001267};; species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Moraxellaceae; Acinetobacter; environmental samples.;" source="Acinetobacter sp. CAG:196.;"
Acyl-(acyl-carrier-protein)--UDP-N-acetylglucosamine O-acyltransferase (EC:2.3.1.129)
Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam ine O-acyltransferase Tax=Acinetobacter sp. CAG:196 RepID=R5SVF0_9GAMM
js4906-20-3_S2_scaffold_42_2
Clostridium sp. CAG:715, Melainabacteria, Bacteria

Not on your lists

comp(1319..1768)
DNA (450bp) protein (150aa)
fabZ; (3R)-hydroxymyristoyl-ACP dehydratase (EC:4.2.1.-); K02372 3R-hydroxymyristoyl ACP dehydrase [EC:4.2.1.-] bin=MEL_A1 species=MEL_A1 genus=MEL_A1 taxon_order=MEL_A1 taxon_class=MEL_A1 phylum=Melainabacteria tax=MEL_A1 organism_group=Melainabacteria
3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ {ECO:0000256|SAAS:SAAS00064869}; EC=4.2.1.59 {ECO:0000256|SAAS:SAAS00064862};; species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:715.;"
fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ (EC:4.2.1.59)
js4906-20-3_S2_scaffold_42_3
Clostridium sp. CAG:967, Melainabacteria, Bacteria

Not on your lists

comp(1781..2596)
DNA (816bp) protein (272aa)
UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase {ECO:0000256|SAAS:SAAS00041388}; EC=3.5.1.- {ECO:0000256|SAAS:SAAS00041386};; species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:967.;"
UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase Tax=Clostridium sp. CAG:967 RepID=R5K631_9CLOT
lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase
js4906-20-3_S2_scaffold_42_4
Brachyspira sp. CAG:484, Melainabacteria, Bacteria

Not on your lists

comp(2608..3702)
DNA (1095bp) protein (365aa)
UDP-3-O-acylglucosamine N-acyltransferase {ECO:0000256|HAMAP-Rule:MF_00523}; EC=2.3.1.- {ECO:0000256|HAMAP-Rule:MF_00523};; species="Bacteria; Spirochaetes; Brachyspirales; Brachyspiraceae; Brachyspira; environmental samples.;" source="Brachyspira sp. CAG:484.;"
UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase (EC:2.3.1.-)
UDP-3-O-acylglucosamine N-acyltransferase Tax=Brachyspira sp. CAG:484 RepID=R5HIE0_9SPIR
js4906-20-3_S2_scaffold_42_5
Clostridium sp. CAG:813, Melainabacteria, Bacteria

Not on your lists

comp(3725..4201)
DNA (477bp) protein (159aa)
Protein RfaE domain II Tax=Clostridium sp. CAG:813 RepID=R7MBE7_9CLOT
Protein RfaE domain II {ECO:0000313|EMBL:CDE97990.1}; species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:813.;"
ADP-heptose synthase
js4906-20-3_S2_scaffold_42_6
Clostridium sp. CAG:715, Melainabacteria, Bacteria

Not on your lists

comp(4201..5217)
DNA (1017bp) protein (339aa)
Aspartate-semialdehyde dehydrogenase {ECO:0000256|HAMAP-Rule:MF_02121}; Short=ASA dehydrogenase {ECO:0000256|HAMAP-Rule:MF_02121};; Short=ASADH {ECO:0000256|HAMAP-Rule:MF_02121};; EC=1.2.1.11 {ECO:0000256|HAMAP-Rule:MF_02121};; Aspartate-beta-semialdehyde dehydrogenase {ECO:0000256|HAMAP-Rule:MF_02121}; species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:715.;"
aspartate-semialdehyde dehydrogenase (EC:1.2.1.11)
Aspartate-semialdehyde dehydrogenase Tax=Clostridium sp. CAG:715 RepID=R5DM30_9CLOT
js4906-20-3_S2_scaffold_42_7
Acinetobacter sp. CAG:196, Melainabacteria, Bacteria

Not on your lists

comp(5239..5985)
DNA (747bp) protein (249aa)
4-hydroxy-tetrahydrodipicolinate reductase {ECO:0000256|HAMAP-Rule:MF_00102, ECO:0000256|SAAS:SAAS00018068}; Short=HTPA reductase {ECO:0000256|HAMAP-Rule:MF_00102};; EC=1.17.1.8 {ECO:0000256|HAMAP-Rule:MF_00102, ECO:0000256|SAAS:SAAS00018030};; species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Moraxellaceae; Acinetobacter; environmental samples.;" source="Acinetobacter sp. CAG:196.;"
dihydrodipicolinate reductase (EC:1.17.1.8)
Dihydrodipicolinate reductase Tax=Lentisphaera araneosa HTCC2155 RepID=A6DRR8_9BACT bin=MEL_C2 species=Lentisphaera araneosa genus=Lentisphaera taxon_order=Lentisphaerales taxon_class=Lentisphaeria phylum=Lentisphaerae tax=MEL_C2 organism_group=Melainabacteria
js4906-20-3_S2_scaffold_42_8
Clostridium sp. CAG:729, Melainabacteria, Bacteria

Not on your lists

6056..6697
DNA (642bp) protein (214aa)
rnhC; ribonuclease HIII (fragment) (EC:3.1.26.4); K03471 ribonuclease HIII [EC:3.1.26.4] bin=MEL_C1 species=MEL_C1 genus=MEL_C1 taxon_order=MEL_C1 taxon_class=MEL_C1 phylum=Melainabacteria tax=MEL_C1 organism_group=Melainabacteria
Ribonuclease {ECO:0000256|RuleBase:RU003515}; EC=3.1.26.- {ECO:0000256|RuleBase:RU003515};; species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:729.;"
rnhC; ribonuclease HIII (fragment) (EC:3.1.26.4)
js4906-20-3_S2_scaffold_42_9
Megasphaera micronuciformis, Megasphaera, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

6799..7341
DNA (543bp) protein (181aa)
Rubredoxin Tax=Megasphaera micronuciformis F0359 RepID=E2ZEC6_9FIRM
Rubredoxin {ECO:0000313|EMBL:EFQ03400.1}; species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Megasphaera.;" source="Megasphaera micronuciformis F0359.;"
rubrerythrin
js4906-20-3_S2_scaffold_42_10
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7713..10037)
DNA (2325bp) protein (775aa)
Putative signaling protein Tax=Clostridium difficile RepID=U3WCU6_CLODI
Diguanylate cyclase domain protein {ECO:0000313|EMBL:EHJ32814.1}; species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 002-P50-2011.;"
signaling protein
js4906-20-3_S2_scaffold_42_11
Clostridium sp. CAG:306, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10149..12521)
DNA (2373bp) protein (791aa)
Uncharacterized protein Tax=Clostridium sp. CAG:306 RepID=R6PDK2_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC21550.1}; species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:306.;"
ferrous iron transport protein B
js4906-20-3_S2_scaffold_42_12
Bacteroides sp. CAG:754, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(12885..13919)
DNA (1035bp) protein (345aa)
Alcohol dehydrogenase (iditol or butanediol) bin=MEL_C2 species=MEL_C2 genus=MEL_C2 taxon_order=MEL_C2 taxon_class=MEL_C2 phylum=Melainabacteria tax=MEL_C2 organism_group=Melainabacteria
Alcohol dehydrogenase zinc-containing {ECO:0000313|EMBL:CDA83199.1}; species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides sp. CAG:754.;"
putative zinc-binding alcohol dehydrogenase
js4906-20-3_S2_scaffold_42_13
Clostridium sp. CAG:729, Melainabacteria, Bacteria

Not on your lists

14252..15670
DNA (1419bp) protein (473aa)
dma:DMR_27010 dnaB; replicative DNA helicase; K02314 replicative DNA helicase [EC:3.6.4.12] bin=MEL_C1 species=MEL_C1 genus=MEL_C1 taxon_order=MEL_C1 taxon_class=MEL_C1 phylum=Melainabacteria tax=MEL_C1 organism_group=Melainabacteria
Replicative DNA helicase {ECO:0000313|EMBL:CDE89040.1}; species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:729.;"
replicative DNA helicase
js4906-20-3_S2_scaffold_42_14
Fusobacterium sp. CAG:815, Melainabacteria, Bacteria

Not on your lists

15764..16387
DNA (624bp) protein (208aa)
Metallo cofactor biosynthesis protein Tax=Fusobacterium sp. CAG:815 RepID=R7M030_9FUSO
Metallo cofactor biosynthesis protein {ECO:0000313|EMBL:CDE93258.1}; species="Bacteria; Fusobacteria; Fusobacteriales; Fusobacteriaceae; Fusobacterium; environmental samples.;" source="Fusobacterium sp. CAG:815.;"
TatD family deoxyribonuclease
js4906-20-3_S2_scaffold_42_15
Fusobacterium sp. CAG:439, Melainabacteria, Bacteria

Not on your lists

16417..18585
DNA (2169bp) protein (723aa)
Acetyl coenzyme A synthetase alpha domain protein Tax=Fusobacterium sp. CAG:439 RepID=R7JBJ4_9FUSO
Acetyl coenzyme A synthetase alpha domain protein {ECO:0000313|EMBL:CDE60998.1}; species="Bacteria; Fusobacteria; Fusobacteriales; Fusobacteriaceae; Fusobacterium; environmental samples.;" source="Fusobacterium sp. CAG:439.;"
CoA-binding protein
js4906-20-3_S2_scaffold_42_16
Clostridium sp. CAG:967, Melainabacteria, Bacteria

Not on your lists

comp(18647..18937)
DNA (291bp) protein (97aa)
Uncharacterized protein Tax=Clostridium sp. CAG:967 RepID=R5KP58_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCY62747.1}; species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:967.;"
js4906-20-3_S2_scaffold_42_17
Clostridium sp. CAG:967, Melainabacteria, Bacteria

Not on your lists

comp(19012..20475)
DNA (1464bp) protein (488aa)
Glutamate--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00022}; EC=6.1.1.17 {ECO:0000256|HAMAP-Rule:MF_00022};; Glutamyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00022}; species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:967.;"
glutamyl-tRNA synthetase (EC:6.1.1.17)
Glutamate--tRNA ligase Tax=Clostridium sp. CAG:967 RepID=R5KP52_9CLOT
js4906-20-3_S2_scaffold_42_18
unknown

Not on your lists

comp(20554..21006)
DNA (453bp) protein (151aa)

This feature has no annotations

js4906-20-3_S2_scaffold_42_19
Aurantimonas manganoxydans, Aurantimonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21134..23245
DNA (2112bp) protein (704aa)
Putative two-component signal transduction histidine kinase Tax=Manganese-oxidizing bacterium (strain SI85-9A1) RepID=Q1YLB0_MOBAS
Putative two-component signal transduction histidine kinase {ECO:0000313|EMBL:EAS51821.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Aurantimonadaceae; Aurantimonas.;" source="Manganese-oxidizing bacterium (strain SI85-9A1).;"
pas sensor protein
js4906-20-3_S2_scaffold_42_20
Tatlockia micdadei, Tatlockia, Legionellales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23293..23757)
DNA (465bp) protein (155aa)
chemotaxis protein CheY Tax=Fluoribacter dumoffii RepID=UPI00026C81CB
putative two-component response regulator
Putative two-component response regulator {ECO:0000313|EMBL:CEG62010.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales; Legionellaceae; Tatlockia.;" source="Tatlockia micdadei (Legionella micdadei).;"
js4906-20-3_S2_scaffold_42_21
unknown

Not on your lists

23923..24399
DNA (477bp) protein (159aa)
coiled-coil 91..112 bin=MEL_C2 species=MEL_C2 genus=MEL_C2 taxon_order=MEL_C2 taxon_class=MEL_C2 phylum=Melainabacteria tax=MEL_C2 organism_group=Melainabacteria
js4906-20-3_S2_scaffold_42_22
Clostridium sp. CAG:768, Melainabacteria, Bacteria

Not on your lists

comp(24406..24972)
DNA (567bp) protein (189aa)
Maltose O-acetyltransferase Tax=Clostridium sp. CAG:768 RepID=R7I153_9CLOT
Maltose O-acetyltransferase {ECO:0000313|EMBL:CDE45360.1}; species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:768.;"
lacA; galactose-6-phosphate isomerase LacA subunit
js4906-20-3_S2_scaffold_42_23
Clostridium sp. CAG:768, Melainabacteria, Bacteria

Not on your lists

25486..26184
DNA (699bp) protein (233aa)
Flagellar basal-body rod protein FlgF Tax=Clostridium sp. CAG:768 RepID=R7HWD0_9CLOT
Flagellar basal-body rod protein FlgF {ECO:0000313|EMBL:CDE42547.1}; species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:768.;"
flagellar basal body rod protein FlgF
js4906-20-3_S2_scaffold_42_24
Clostridium sp. CAG:729, Melainabacteria, Bacteria

Not on your lists

26213..26935
DNA (723bp) protein (241aa)
Flagellar basal-body rod protein FlgG Tax=Oceanicaulis sp. HTCC2633 RepID=A3UE00_9RHOB bin=MEL_C1 species=Oceanicaulis sp. HTCC2633 genus=Oceanicaulis taxon_order=Rhodobacterales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=MEL_C1 organism_group=Melainabacteria
Flagellar basal-body rod protein FlgG {ECO:0000313|EMBL:CDE88103.1}; species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:729.;"
flgG; flagellar basal body rod protein FlgG
js4906-20-3_S2_scaffold_42_25
Acinetobacter sp. CAG:196, Melainabacteria, Bacteria

Not on your lists

26982..27335
DNA (354bp) protein (118aa)
Flagellar basal body rod protein FlgB Tax=Acinetobacter sp. CAG:196 RepID=R5SCE9_9GAMM
Flagellar basal body rod protein FlgB {ECO:0000313|EMBL:CCZ51360.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Moraxellaceae; Acinetobacter; environmental samples.;" source="Acinetobacter sp. CAG:196.;"
flagellar basal-body rod protein FlgB
js4906-20-3_S2_scaffold_42_26
Clostridium sp. CAG:813, Melainabacteria, Bacteria

Not on your lists

27385..27828
DNA (444bp) protein (148aa)
Flagellar basal-body rod protein FlgC Tax=Clostridium sp. CAG:813 RepID=R7MGF3_9CLOT
Flagellar basal-body rod protein FlgC {ECO:0000313|EMBL:CDE99715.1}; species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:813.;"
flgC; flagellar basal body rod protein FlgC
js4906-20-3_S2_scaffold_42_27
Clostridium sp. CAG:813, Melainabacteria, Bacteria

Not on your lists

27955..29061
DNA (1107bp) protein (369aa)
tRNA-specific 2-thiouridylase MnmA {ECO:0000256|HAMAP-Rule:MF_00144}; EC=2.8.1.- {ECO:0000256|HAMAP-Rule:MF_00144};; species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:813.;"
tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (EC:2.1.1.61)
tRNA-specific 2-thiouridylase MnmA Tax=Clostridium sp. CAG:813 RepID=R7MBV0_9CLOT
js4906-20-3_S2_scaffold_42_28
Clostridium sp. CAG:306, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29061..30098
DNA (1038bp) protein (346aa)
Radical SAM domain protein Tax=Clostridium sp. CAG:306 RepID=R6PTJ1_9CLOT
Radical SAM domain protein {ECO:0000313|EMBL:CDC21821.1}; species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:306.;"
biotin synthase
js4906-20-3_S2_scaffold_42_29
Brachyspira sp. CAG:484, Melainabacteria, Bacteria

Not on your lists

30168..30674
DNA (507bp) protein (169aa)
Uncharacterized protein Tax=Brachyspira sp. CAG:484 RepID=R5H9F5_9SPIR
Uncharacterized protein {ECO:0000313|EMBL:CCY24739.1}; species="Bacteria; Spirochaetes; Brachyspirales; Brachyspiraceae; Brachyspira; environmental samples.;" source="Brachyspira sp. CAG:484.;"
AsnC family transcriptional regulator
js4906-20-3_S2_scaffold_42_30
Acinetobacter sp. CAG:196, Melainabacteria, Bacteria

Not on your lists

30647..31810
DNA (1164bp) protein (388aa)
bco:Bcell_3381 class I and II aminotransferase; K10907 aminotransferase [EC:2.6.1.-] bin=MEL_C2 species=MEL_C2 genus=MEL_C2 taxon_order=MEL_C2 taxon_class=MEL_C2 phylum=Melainabacteria tax=MEL_C2 organism_group=Melainabacteria
Uncharacterized protein {ECO:0000313|EMBL:CCZ51069.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Moraxellaceae; Acinetobacter; environmental samples.;" source="Acinetobacter sp. CAG:196.;"
aspartate/tyrosine/aromatic aminotransferase
Displaying items 1-30 of 97 in total

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