ggKbase home page

js4906-20-3_S2_scaffold_235

Search features with annotation key words

Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
js4906-20-3_S2_scaffold_235_1
unknown

Not on your lists

comp(2..67)
DNA (66bp) protein (22aa)

This feature has no annotations

js4906-20-3_S2_scaffold_235_2
Clostridium sp. CAG:768, Melainabacteria, Bacteria

Not on your lists

comp(295..1464)
DNA (1170bp) protein (390aa)
Peptidylprolyl isomerase {ECO:0000256|SAAS:SAAS00143148}; EC=5.2.1.8 {ECO:0000256|SAAS:SAAS00143148};; species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:768.;"
PPIC-type PPIASE domain protein Tax=Clostridium sp. CAG:768 RepID=R7I1A7_9CLOT
PpiC-type peptidylprolyl cis-trans isomerase
js4906-20-3_S2_scaffold_235_3
Clostridium sp. CAG:768, Melainabacteria, Bacteria

Not on your lists

comp(1478..4837)
DNA (3360bp) protein (1120aa)
Transcription-repair-coupling factor {ECO:0000256|HAMAP-Rule:MF_00969}; Short=TRCF {ECO:0000256|HAMAP-Rule:MF_00969};; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00969};; species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:768.;"
Transcription-repair-coupling factor Tax=Clostridium sp. CAG:768 RepID=R7I0J1_9CLOT
mfd; transcription-repair coupling factor
js4906-20-3_S2_scaffold_235_4
Clostridium sp. CAG:715, Melainabacteria, Bacteria

Not on your lists

comp(4837..5172)
DNA (336bp) protein (112aa)
Uncharacterized protein Tax=Clostridium sp. CAG:715 RepID=R5DUL6_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCX80397.1}; species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:715.;"
js4906-20-3_S2_scaffold_235_5
Fusobacterium sp. CAG:439, Melainabacteria, Bacteria

Not on your lists

comp(5156..6475)
DNA (1320bp) protein (440aa)
UDP-N-acetylglucosamine 1-carboxyvinyltransferase {ECO:0000256|HAMAP-Rule:MF_00111, ECO:0000256|SAAS:SAAS00085344}; EC=2.5.1.7 {ECO:0000256|HAMAP-Rule:MF_00111, ECO:0000256|SAAS:SAAS00085344};; Enoylpyruvate transferase {ECO:0000256|HAMAP-Rule:MF_00111}; UDP-N-acetylglucosamine enolpyruvyl transferase {ECO:0000256|HAMAP-Rule:MF_00111}; species="Bacteria; Fusobacteria; Fusobacteriales; Fusobacteriaceae; Fusobacterium; environmental samples.;" source="Fusobacterium sp. CAG:439.;"
murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase (EC:2.5.1.7)
UDP-N-acetylglucosamine 1-carboxyvinyltransferase Tax=Fusobacterium sp. CAG:439 RepID=R7JA30_9FUSO
js4906-20-3_S2_scaffold_235_6
Clostridium sp. CAG:306, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6528..7823)
DNA (1296bp) protein (432aa)
Enolase {ECO:0000256|HAMAP-Rule:MF_00318}; EC=4.2.1.11 {ECO:0000256|HAMAP-Rule:MF_00318};; 2-phospho-D-glycerate hydro-lyase {ECO:0000256|HAMAP-Rule:MF_00318}; 2-phosphoglycerate dehydratase {ECO:0000256|HAMAP-Rule:MF_00318}; species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:306.;"
enolase (EC:4.2.1.11)
Enolase Tax=Clostridium sp. CAG:306 RepID=R6P9W3_9CLOT
js4906-20-3_S2_scaffold_235_7
Acinetobacter sp. CAG:196, Melainabacteria, Bacteria

Not on your lists

7936..9219
DNA (1284bp) protein (428aa)
Bifunctional protein GlmU Tax=Acinetobacter sp. CAG:196 RepID=R5SGU3_9GAMM
Bifunctional protein GlmU {ECO:0000256|HAMAP-Rule:MF_01631, ECO:0000256|SAAS:SAAS00083647}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Moraxellaceae; Acinetobacter; environmental samples.;" source="Acinetobacter sp. CAG:196.;"
UDP-N-acetylglucosamine pyrophosphorylase
js4906-20-3_S2_scaffold_235_8
Fusobacterium sp. CAG:439, Melainabacteria, Bacteria

Not on your lists

9231..9677
DNA (447bp) protein (149aa)
Deoxycytidylate deaminase Tax=Fusobacterium sp. CAG:439 RepID=R7JAS9_9FUSO
Deoxycytidylate deaminase {ECO:0000313|EMBL:CDE59997.1}; species="Bacteria; Fusobacteria; Fusobacteriales; Fusobacteriaceae; Fusobacterium; environmental samples.;" source="Fusobacterium sp. CAG:439.;"
dCMP deaminase; Late competence protein ComEB
js4906-20-3_S2_scaffold_235_9
unknown

Not on your lists

comp(9740..9970)
DNA (231bp) protein (77aa)

This feature has no annotations

js4906-20-3_S2_scaffold_235_10
Brachyspira sp. CAG:484, Melainabacteria, Bacteria

Not on your lists

10216..11868
DNA (1653bp) protein (551aa)
Ycf45 protein Tax=Brachyspira sp. CAG:484 RepID=R5H1P1_9SPIR
Ycf45 protein {ECO:0000313|EMBL:CCY23560.1}; species="Bacteria; Spirochaetes; Brachyspirales; Brachyspiraceae; Brachyspira; environmental samples.;" source="Brachyspira sp. CAG:484.;"
recombination factor protein RarA
js4906-20-3_S2_scaffold_235_11
Clostridium sp. CAG:715, Melainabacteria, Bacteria

Not on your lists

comp(11865..12671)
DNA (807bp) protein (269aa)
Metallophosphoesterase Tax=Beggiatoa sp. PS RepID=A7C221_9GAMM bin=MEL_A1 species=Beggiatoa sp. PS genus=Beggiatoa taxon_order=Thiotrichales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=MEL_A1 organism_group=Melainabacteria
Ser/Thr protein phosphatase family protein {ECO:0000313|EMBL:CCX80488.1}; species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:715.;"
Ser/Thr protein phosphatase family protein
js4906-20-3_S2_scaffold_235_12
Clostridium sp. CAG:306, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12747..14480
DNA (1734bp) protein (578aa)
Undecaprenyl phosphate--lipid A 4-amino-4-deoxy-L-arabinose transferase putative Tax=Clostridium sp. CAG:306 RepID=R6P550_9CLOT
Undecaprenyl phosphate--lipid A 4-amino-4-deoxy-L-arabinose transferase putative {ECO:0000313|EMBL:CDC18595.1}; species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:306.;"
arnT; undecaprenyl phosphate--lipid A 4-amino-4-deoxy-L-arabinose transferase
js4906-20-3_S2_scaffold_235_13
Clostridium sp. CAG:715, Melainabacteria, Bacteria

Not on your lists

14965..16101
DNA (1137bp) protein (379aa)
Anhydro-N-acetylmuramic acid kinase {ECO:0000256|HAMAP-Rule:MF_01270, ECO:0000256|SAAS:SAAS00085893}; EC=2.7.1.170 {ECO:0000256|HAMAP-Rule:MF_01270, ECO:0000256|SAAS:SAAS00085888};; AnhMurNAc kinase {ECO:0000256|HAMAP-Rule:MF_01270}; species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:715.;"
UniRef90_F1ZS54 Anhydro-N-acetylmuramic acid kinase Tax=Thermoanaerobacter ethanolicus JW 200 RepID=F1ZS54_THEET bin=MEL_A1 species=Thermoanaerobacter ethanolicus genus=Thermoanaerobacter taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=MEL_A1 organism_group=Melainabacteria
hypothetical protein
js4906-20-3_S2_scaffold_235_14
Clostridium sp. CAG:306, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16152..17207)
DNA (1056bp) protein (352aa)
Phospho-2-dehydro-3-deoxyheptonate aldolase subtype 2 Tax=Clostridium sp. CAG:306 RepID=R6PJF2_9CLOT
Phospho-2-dehydro-3-deoxyheptonate aldolase subtype 2 {ECO:0000313|EMBL:CDC18566.1}; species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:306.;"
3-deoxy-7-phosphoheptulonate synthase
js4906-20-3_S2_scaffold_235_15
Fusobacterium sp. CAG:439, Melainabacteria, Bacteria

Not on your lists

comp(17551..18396)
DNA (846bp) protein (282aa)
Serine/threonine-protein kinase Tax=Fusobacterium sp. CAG:439 RepID=R7JC71_9FUSO
Serine/threonine-protein kinase {ECO:0000313|EMBL:CDE60482.1}; species="Bacteria; Fusobacteria; Fusobacteriales; Fusobacteriaceae; Fusobacterium; environmental samples.;" source="Fusobacterium sp. CAG:439.;"
hypothetical protein
js4906-20-3_S2_scaffold_235_16
Brachyspira sp. CAG:484, Melainabacteria, Bacteria

Not on your lists

comp(18399..20258)
DNA (1860bp) protein (620aa)
4-alpha-glucanotransferase (EC:2.4.1.25)
4-alpha-glucanotransferase Tax=Brachyspira sp. CAG:484 RepID=R5HJ96_9SPIR
4-alpha-glucanotransferase {ECO:0000313|EMBL:CCY24786.1}; species="Bacteria; Spirochaetes; Brachyspirales; Brachyspiraceae; Brachyspira; environmental samples.;" source="Brachyspira sp. CAG:484.;"
js4906-20-3_S2_scaffold_235_17
Brachyspira sp. CAG:484, Melainabacteria, Bacteria

Not on your lists

comp(20333..22903)
DNA (2571bp) protein (857aa)
DNA mismatch repair protein MutS Tax=Brachyspira sp. CAG:484 RepID=R5H3N8_9SPIR
DNA mismatch repair protein MutS {ECO:0000256|HAMAP-Rule:MF_00096, ECO:0000256|SAAS:SAAS00184333}; species="Bacteria; Spirochaetes; Brachyspirales; Brachyspiraceae; Brachyspira; environmental samples.;" source="Brachyspira sp. CAG:484.;"
DNA mismatch repair protein MutS
js4906-20-3_S2_scaffold_235_18
Fusobacterium sp. CAG:439, Melainabacteria, Bacteria

Not on your lists

22956..23567
DNA (612bp) protein (204aa)
Uncharacterized protein Tax=Fusobacterium sp. CAG:439 RepID=R7J905_9FUSO
Uncharacterized protein {ECO:0000313|EMBL:CDE60098.1}; species="Bacteria; Fusobacteria; Fusobacteriales; Fusobacteriaceae; Fusobacterium; environmental samples.;" source="Fusobacterium sp. CAG:439.;"
js4906-20-3_S2_scaffold_235_19
Fusobacterium sp. CAG:815, Melainabacteria, Bacteria

Not on your lists

comp(23624..24325)
DNA (702bp) protein (234aa)
Thymidylate synthase ThyX {ECO:0000256|HAMAP-Rule:MF_01408}; Short=TS {ECO:0000256|HAMAP-Rule:MF_01408};; Short=TSase {ECO:0000256|HAMAP-Rule:MF_01408};; EC=2.1.1.148 {ECO:0000256|HAMAP-Rule:MF_01408};; species="Bacteria; Fusobacteria; Fusobacteriales; Fusobacteriaceae; Fusobacterium; environmental samples.;" source="Fusobacterium sp. CAG:815.;"
FAD-dependent thymidylate synthase (EC:2.1.1.148)
Thymidylate synthase ThyX Tax=Fusobacterium sp. CAG:815 RepID=R7LX56_9FUSO
js4906-20-3_S2_scaffold_235_20
Clostridium sp. CAG:729, Melainabacteria, Bacteria

Not on your lists


comp(24414..24617)
DNA (204bp) protein (68aa)
50S ribosomal protein L31 Tax=Fusobacterium sp. CAG:439 RepID=R7J5V5_9FUSO
50S ribosomal protein L31 {ECO:0000256|HAMAP-Rule:MF_00501, ECO:0000256|SAAS:SAAS00004482}; species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:729.;"
50S ribosomal protein L31
Displaying 20 items

View Taxonomy