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js4906-27-3_S30_scaffold_437

Search features with annotation key words

Displaying items 1-30 of 35 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
js4906-27-3_S30_scaffold_437_1

Not on your lists

comp(2..232)
DNA (231bp) protein (77aa)
Uncharacterized protein Tax=uncultured bacterium 413004-H17 RepID=S4W826_9BACT
Uncharacterized protein {ECO:0000313|EMBL:AGO88114.1}; species="Bacteria; environmental samples.;" source="uncultured bacterium 413004-H17.;"
hypothetical protein
js4906-27-3_S30_scaffold_437_2
Clostridium sp. CAG:729, Melainabacteria, Bacteria

Not on your lists

1945..2700
DNA (756bp) protein (252aa)
Putative uncharacterized protein Tax=Parabacteroides RepID=A7AEL6_9PORP bin=MEL_C1 species=unknown genus=Parabacteroides taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=MEL_C1 organism_group=Melainabacteria
RNA methyltransferase TrmH family group 3 {ECO:0000313|EMBL:CDE89147.1}; species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:729.;"
RNA methyltransferase, TrmH family, group 3
js4906-27-3_S30_scaffold_437_3
Clostridium sp. CAG:967, Melainabacteria, Bacteria

Not on your lists

2727..3695
DNA (969bp) protein (323aa)
RNA polymerase sigma factor Tax=Clostridium sp. CAG:967 RepID=R5K924_9CLOT
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000715}; species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:967.;"
RNA polymerase
js4906-27-3_S30_scaffold_437_4
Clostridium sp. CAG:768, Melainabacteria, Bacteria

Not on your lists

comp(3763..5550)
DNA (1788bp) protein (596aa)
Threonine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00184, ECO:0000256|SAAS:SAAS00106033}; EC=6.1.1.3 {ECO:0000256|HAMAP-Rule:MF_00184, ECO:0000256|SAAS:SAAS00106033};; Threonyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00184}; species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:768.;"
thrS; threonyl-tRNA synthetase (EC:6.1.1.3)
Threonine--tRNA ligase Tax=Clostridium sp. CAG:768 RepID=R7HV27_9CLOT
js4906-27-3_S30_scaffold_437_5
Fusobacterium sp. CAG:439, Melainabacteria, Bacteria

Not on your lists

comp(5612..6064)
DNA (453bp) protein (151aa)
Deoxycytidylate deaminase Tax=Fusobacterium sp. CAG:439 RepID=R7JAS9_9FUSO
Deoxycytidylate deaminase {ECO:0000313|EMBL:CDE59997.1}; species="Bacteria; Fusobacteria; Fusobacteriales; Fusobacteriaceae; Fusobacterium; environmental samples.;" source="Fusobacterium sp. CAG:439.;"
deoxycytidylate deaminase
js4906-27-3_S30_scaffold_437_6
Acinetobacter sp. CAG:196, Melainabacteria, Bacteria

Not on your lists

6142..7491
DNA (1350bp) protein (450aa)
flagellar protein export ATPase FliI (EC:3.6.3.15)
Type III secretion system ATPase FliI/YscN Tax=Acinetobacter sp. CAG:196 RepID=R5SIV6_9GAMM
Type III secretion system ATPase FliI/YscN {ECO:0000313|EMBL:CCZ50779.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Moraxellaceae; Acinetobacter; environmental samples.;" source="Acinetobacter sp. CAG:196.;"
js4906-27-3_S30_scaffold_437_7

Not on your lists

comp(7607..8143)
DNA (537bp) protein (179aa)
seg 38..49 bin=ACD20 species=ACD20 genus=ACD20 taxon_order=ACD20 taxon_class=ACD20 phylum=Melainabacteria tax=ACD20 organism_group=Novel_Cyano/Firm organism_desc=Novel_Cyano/Firm
Uncharacterized protein {ECO:0000313|EMBL:EKE02811.1}; species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
js4906-27-3_S30_scaffold_437_8
Clostridium sp. CAG:729, Melainabacteria, Bacteria

Not on your lists

comp(8256..9032)
DNA (777bp) protein (259aa)
ABC transporter substrate binding protein (amino acid); K02030 polar amino acid transport system substrate-binding protein bin=MEL_C1 species=MEL_C1 genus=MEL_C1 taxon_order=MEL_C1 taxon_class=MEL_C1 phylum=Melainabacteria tax=MEL_C1 organism_group=Melainabacteria
Glutamine ABC transporter (Glutamine-binding lipoprotein) {ECO:0000313|EMBL:CDE87927.1}; species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:729.;"
glutamine ABC transporter substrate-binding protein
js4906-27-3_S30_scaffold_437_9
Clostridium sp. CAG:768, Melainabacteria, Bacteria

Not on your lists

comp(9075..10229)
DNA (1155bp) protein (385aa)
Uncharacterized protein Tax=Clostridium sp. CAG:768 RepID=R7HYQ0_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDE44809.1}; species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:768.;"
hypothetical protein
js4906-27-3_S30_scaffold_437_10
Acinetobacter sp. CAG:196, Melainabacteria, Bacteria

Not on your lists

comp(10222..10734)
DNA (513bp) protein (171aa)
2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase (EC:2.7.6.3)
7, 8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK Tax=Caminibacter mediatlanticus TB-2 RepID=A6DBP6_9PROT bin=MEL_C2 species=Caminibacter mediatlanticus genus=Caminibacter taxon_order=Nautiliales taxon_class=Epsilonproteobacteria phylum=Proteobacteria tax=MEL_C2 organism_group=Melainabacteria
2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase {ECO:0000313|EMBL:CCZ49988.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Moraxellaceae; Acinetobacter; environmental samples.;" source="Acinetobacter sp. CAG:196.;"
js4906-27-3_S30_scaffold_437_11
Helicobacter fennelliae, Helicobacter, Campylobacterales, Epsilonproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10754..12286)
DNA (1533bp) protein (511aa)
Uncharacterized protein Tax=Helicobacter fennelliae MRY12-0050 RepID=T1D0R8_9HELI
Uncharacterized protein {ECO:0000313|EMBL:GAD18806.1}; species="Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; Helicobacteraceae; Helicobacter.;" source="Helicobacter fennelliae MRY12-0050.;"
js4906-27-3_S30_scaffold_437_12
Helicobacter bilis, Helicobacter, Campylobacterales, Epsilonproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12283..13839)
DNA (1557bp) protein (519aa)
Uncharacterized protein Tax=Helicobacter bilis WiWa RepID=N2BI94_9HELI
Uncharacterized protein {ECO:0000313|EMBL:EMZ38150.1}; species="Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; Helicobacteraceae; Helicobacter.;" source="Helicobacter bilis WiWa.;"
js4906-27-3_S30_scaffold_437_13
Brachyspira sp. CAG:484, Melainabacteria, Bacteria

Not on your lists

comp(13849..15435)
DNA (1587bp) protein (529aa)
Peptidase S1 and S6 chymotrypsin/Hap Tax=Brachyspira sp. CAG:484 RepID=R5H6I8_9SPIR
Peptidase S1 and S6 chymotrypsin/Hap {ECO:0000313|EMBL:CCY25325.1}; species="Bacteria; Spirochaetes; Brachyspirales; Brachyspiraceae; Brachyspira; environmental samples.;" source="Brachyspira sp. CAG:484.;"
peptidase S1 and S6 chymotrypsin/Hap
js4906-27-3_S30_scaffold_437_14
Helicobacter sp. MIT 11-5569, Helicobacter, Campylobacterales, Epsilonproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15969..16715)
DNA (747bp) protein (249aa)
hypothetical protein Tax=Ruminococcus flavefaciens RepID=UPI0001C37E77
Uncharacterized protein {ECO:0000313|EMBL:KGL10367.1}; species="Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; Helicobacteraceae; Helicobacter.;" source="Helicobacter sp. MIT 11-5569.;"
hypothetical protein
js4906-27-3_S30_scaffold_437_15
Acinetobacter sp. CAG:196, Melainabacteria, Bacteria

Not on your lists

comp(16728..17207)
DNA (480bp) protein (160aa)
Uncharacterized protein Tax=Acinetobacter sp. CAG:196 RepID=R5SD32_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:CCZ51555.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Moraxellaceae; Acinetobacter; environmental samples.;" source="Acinetobacter sp. CAG:196.;"
js4906-27-3_S30_scaffold_437_16
unknown

Not on your lists

comp(17225..18700)
DNA (1476bp) protein (492aa)

This feature has no annotations

js4906-27-3_S30_scaffold_437_17
Fusobacterium sp. CAG:439, Melainabacteria, Bacteria

Not on your lists

18779..19054
DNA (276bp) protein (92aa)
Transcriptional regulator XRE family Tax=Fusobacterium sp. CAG:439 RepID=R7JD53_9FUSO
Transcriptional regulator XRE family {ECO:0000313|EMBL:CDE60797.1}; species="Bacteria; Fusobacteria; Fusobacteriales; Fusobacteriaceae; Fusobacterium; environmental samples.;" source="Fusobacterium sp. CAG:439.;"
js4906-27-3_S30_scaffold_437_18
Succinatimonas sp. CAG:777, Succinatimonas, Aeromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19175..19972)
DNA (798bp) protein (266aa)
mtnU; putative subgroup of the nitrilase superfamily (EC:3.5.-.-)
Predicted amidohydrolase Tax=Succinatimonas sp. CAG:777 RepID=R5EPY1_9GAMM
Predicted amidohydrolase {ECO:0000313|EMBL:CCX90692.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Aeromonadales; Succinivibrionaceae; Succinatimonas; environmental samples.;" source="Succinatimonas sp. CAG:777.;"
js4906-27-3_S30_scaffold_437_19
unknown

Not on your lists

comp(20202..20426)
DNA (225bp) protein (75aa)

This feature has no annotations

js4906-27-3_S30_scaffold_437_20
Clostridium sp. CAG:729, Melainabacteria, Bacteria

Not on your lists

20496..22487
DNA (1992bp) protein (664aa)
UvrABC system protein B Tax=Clostridium sp. CAG:729 RepID=R7LML2_9CLOT
UvrABC system protein B {ECO:0000256|HAMAP-Rule:MF_00204, ECO:0000256|RuleBase:RU003587}; Short=Protein UvrB {ECO:0000256|HAMAP-Rule:MF_00204};; Excinuclease ABC subunit B {ECO:0000256|HAMAP-Rule:MF_00204}; species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:729.;"
excinuclease ABC subunit B
js4906-27-3_S30_scaffold_437_21
Fusobacterium sp. CAG:815, Melainabacteria, Bacteria

Not on your lists

comp(22484..23857)
DNA (1374bp) protein (458aa)
Tetratricopeptide TPR_1 repeat-containing protein Tax=Fusobacterium sp. CAG:815 RepID=R7LV14_9FUSO
Tetratricopeptide TPR_1 repeat-containing protein {ECO:0000313|EMBL:CDE91901.1}; species="Bacteria; Fusobacteria; Fusobacteriales; Fusobacteriaceae; Fusobacterium; environmental samples.;" source="Fusobacterium sp. CAG:815.;"
hypothetical protein
js4906-27-3_S30_scaffold_437_22
Clostridium sp. CAG:715, Melainabacteria, Bacteria

Not on your lists

comp(23847..25316)
DNA (1470bp) protein (490aa)
hypothetical protein bin=MEL_A1 species=MEL_A1 genus=MEL_A1 taxon_order=MEL_A1 taxon_class=MEL_A1 phylum=Melainabacteria tax=MEL_A1 organism_group=Melainabacteria
TPR domain protein {ECO:0000313|EMBL:CCX79582.1}; species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:715.;"
TPR repeat-containing protein
js4906-27-3_S30_scaffold_437_23
Clostridium sp. CAG:768, Melainabacteria, Bacteria

Not on your lists

25412..26080
DNA (669bp) protein (223aa)
Haloacid dehalogenase domain protein hydrolase Tax=Clostridium sp. CAG:768 RepID=R7HV70_9CLOT
Haloacid dehalogenase domain protein hydrolase {ECO:0000313|EMBL:CDE42873.1}; species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:768.;"
haloacid dehalogenase
js4906-27-3_S30_scaffold_437_24
Brachyspira sp. CAG:484, Melainabacteria, Bacteria

Not on your lists

26093..26983
DNA (891bp) protein (297aa)
von Willebrand factor type A domain protein Tax=Brachyspira sp. CAG:484 RepID=R5H6Z4_9SPIR
von Willebrand factor type A domain protein {ECO:0000313|EMBL:CCY25470.1}; species="Bacteria; Spirochaetes; Brachyspirales; Brachyspiraceae; Brachyspira; environmental samples.;" source="Brachyspira sp. CAG:484.;"
hypothetical protein
js4906-27-3_S30_scaffold_437_25
Clostridium sp. CAG:768, Melainabacteria, Bacteria

Not on your lists

comp(26984..27883)
DNA (900bp) protein (300aa)
Uncharacterized protein Tax=Clostridium sp. CAG:768 RepID=R7I150_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDE45355.1}; species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:768.;"
js4906-27-3_S30_scaffold_437_26
Brachyspira sp. CAG:484, Melainabacteria, Bacteria

Not on your lists

comp(27893..28600)
DNA (708bp) protein (236aa)
Uncharacterized protein Tax=Brachyspira sp. CAG:484 RepID=R5HKX8_9SPIR
Uncharacterized protein {ECO:0000313|EMBL:CCY25467.1}; species="Bacteria; Spirochaetes; Brachyspirales; Brachyspiraceae; Brachyspira; environmental samples.;" source="Brachyspira sp. CAG:484.;"
js4906-27-3_S30_scaffold_437_27
Fusobacterium sp. CAG:439, Melainabacteria, Bacteria

Not on your lists

comp(28603..30198)
DNA (1596bp) protein (532aa)
Uncharacterized protein Tax=Fusobacterium sp. CAG:439 RepID=R7JFP8_9FUSO
Uncharacterized protein {ECO:0000313|EMBL:CDE62448.1}; species="Bacteria; Fusobacteria; Fusobacteriales; Fusobacteriaceae; Fusobacterium; environmental samples.;" source="Fusobacterium sp. CAG:439.;"
js4906-27-3_S30_scaffold_437_28
Clostridium sp. CAG:768, Melainabacteria, Bacteria

Not on your lists

comp(30211..30879)
DNA (669bp) protein (223aa)
Uncharacterized protein Tax=Clostridium sp. CAG:768 RepID=R7I146_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDE45350.1}; species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:768.;"
js4906-27-3_S30_scaffold_437_29
Fusobacterium sp. CAG:439, Melainabacteria, Bacteria

Not on your lists

comp(30888..31901)
DNA (1014bp) protein (338aa)
Transport-associated protein Tax=Fusobacterium sp. CAG:439 RepID=R7JFB7_9FUSO
Transport-associated protein {ECO:0000313|EMBL:CDE62446.1}; species="Bacteria; Fusobacteria; Fusobacteriales; Fusobacteriaceae; Fusobacterium; environmental samples.;" source="Fusobacterium sp. CAG:439.;"
js4906-27-3_S30_scaffold_437_30
unknown

Not on your lists

comp(31915..32094)
DNA (180bp) protein (60aa)

This feature has no annotations

Displaying items 1-30 of 35 in total

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