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MEL_B1_2

Search features with annotation key words

Displaying items 1-30 of 264 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
MEL_B1_2_1
unknown

Not on your lists

comp(243..665)
DNA (423bp) protein (141aa)
243..665 - ( gc_cont=0.331)
MEL_B1_2_2
Acinetobacter sp. CAG:196, Melainabacteria, Bacteria

Not on your lists

903..1436
DNA (534bp) protein (178aa)
903..1436 + ( gc_cont=0.335)
Uncharacterized protein {ECO:0000313|EMBL:CCZ49957.1}; TaxID=1262690 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Moraxellaceae; Acinetobacter; environmental samples.;" sou
MEL_B1_2_3
Acinetobacter sp. CAG:196, Melainabacteria, Bacteria

Not on your lists

comp(1470..1685)
DNA (216bp) protein (72aa)
hypothetical protein
Putative uncharacterized protein n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9Y5N1_9FIRM (db=UNIREF evalue=1.5e-11 bit_score=74.0 identity=61.1 coverage=73.61111111111111)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=26)
transmembrane_regions (db=TMHMM db_id=tmhmm from=41 to=63)
MEL_B1_2_4
Acinetobacter sp. CAG:196, Melainabacteria, Bacteria

Not on your lists

comp(1975..2169)
DNA (195bp) protein (65aa)
1975..2169 - ( gc_cont=0.395)
Uncharacterized protein {ECO:0000313|EMBL:CCZ49959.1}; TaxID=1262690 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Moraxellaceae; Acinetobacter; environmental samples.;" sou
MEL_B1_2_5
Acinetobacter sp. CAG:196, Melainabacteria, Bacteria

Not on your lists

comp(2240..2959)
DNA (720bp) protein (240aa)
hypothetical protein
Putative uncharacterized protein n=1 Tax=Desulfotomaculum acetoxidans DSM 771 RepID=C8VYF0_DESAS (db=UNIREF evalue=2.5e-39 bit_score=168.0 identity=39.2 coverage=93.33333333333333)
transmembrane_regions (db=TMHMM db_id=tmhmm from=10 to=32)
seg (db=Seg db_id=seg from=11 to=24)
MEL_B1_2_6
Acinetobacter sp. CAG:196, Melainabacteria, Bacteria

Not on your lists

comp(2973..3905)
DNA (933bp) protein (311aa)
Putative uncharacterized protein n=1 Tax=Clostridium hiranonis DSM 13275 RepID=B6G0H5_9FIRM (db=UNIREF evalue=0.0 bit_score=211.0 identity=39.0 coverage=87.45980707395499)
putative YaaT-like protein involved insporulation or related to DNA replication
RIBOSOMAL LARGE SUBUNIT PSEUDOURIDINE SYNTHASE B (db=HMMPanther db_id=PTHR21600 from=80 to=224 evalue=2.0e-53)
RIBOSOMAL LARGE SUBUNIT PSEUDOURIDINE SYNTHASE B-RELATED (db=HMMPanther db_id=PTHR21600:SF3 from=80 to=224 evalue=2.0e-53)
MEL_B1_2_7
Acinetobacter sp. CAG:196, Melainabacteria, Bacteria

Not on your lists

comp(3898..4899)
DNA (1002bp) protein (334aa)
NAD-dependent glycerol-3-phosphate dehydrogenase domain-containing protein
Glycerol-3-phosphate dehydrogenase (NAD) (db=HMMPIR db_id=PIRSF000114 from=1 to=329 evalue=4.8e-111 interpro_id=IPR006168 interpro_description=Glycerol-3-phosphate dehydrogenase, NAD-dependent GO=Molecular Function: glycerol-3-phosphate dehydrogenase [NAD+] activity (GO:0004367), Biological Process: glycerol-3-phosphate metabolic process (GO:0006072), Cellular Component: glycerol-3-phosphate dehydrogenase complex (GO:0009331), Biological Process: oxidation-reduction process (GO:0055114))
GLYCEROL-3-PHOSPHATE DEHYDROGENASE (db=HMMPanther db_id=PTHR11728 from=2 to=331 evalue=2.5e-80 interpro_id=IPR006168 interpro_description=Glycerol-3-phosphate dehydrogenase, NAD-dependent GO=Molecular Function: glycerol-3-phosphate dehydrogenase [NAD+] activity (GO:0004367), Biological Process: glycerol-3-phosphate metabolic process (GO:0006072), Cellular Component: glycerol-3-phosphate dehydrogenase complex (GO:0009331), Biological Process: oxidation-reduction process (GO:0055114))
6-phosphogluconate dehydrogenase C-terminal domain-like (db=superfamily db_id=SSF48179 from=177 to=329 evalue=4.6e-53 interpro_id=IPR008927 interpro_description=6-phosphogluconate dehydrogenase, C-terminal-like GO=Molecular Function: oxidoreductase activity (GO:0016491), Molecular Function: oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor (GO:0016616), Biological Process: oxidation-reduction process (GO:0055114))
MEL_B1_2_8
Acinetobacter sp. CAG:196, Melainabacteria, Bacteria

Not on your lists

5011..7581
DNA (2571bp) protein (857aa)
Peptidoglycan-binding LysM
Peptidoglycan-binding LysM n=1 Tax=Desulfotomaculum acetoxidans DSM 771 RepID=C8VVY5_DESAS (db=UNIREF evalue=1.7e-16 bit_score=94.0 identity=26.3 coverage=26.60443407234539)
coiled-coil (db=Coil db_id=coil from=235 to=263 evalue=NA)
seg (db=Seg db_id=seg from=91 to=100)
MEL_B1_2_9
Acinetobacter sp. CAG:196, Melainabacteria, Bacteria

Not on your lists

comp(7578..8471)
DNA (894bp) protein (298aa)
N-acetylmuramic acid 6-phosphate etherase
GCKR (db=PatternScan db_id=PS01272 from=181 to=198 evalue=0.0 interpro_id=IPR005486 interpro_description=Glucokinase regulatory, conserved site)
TIGR00274: N-acetylmuramic acid 6-phosphate (db=HMMTigr db_id=TIGR00274 from=4 to=292 evalue=7.9e-130 interpro_id=IPR005488 interpro_description=N-acetylmuramic acid 6-phosphate etherase GO=Molecular Function: carbon-oxygen lyase activity (GO:0016835), Biological Process: amino sugar catabolic process (GO:0046348))
no description (db=Gene3D db_id=G3DSA:3.40.50.10490 from=1 to=246 evalue=1.5e-84)
MEL_B1_2_10
Acinetobacter sp. CAG:196, Melainabacteria, Bacteria

Not on your lists

comp(8498..8962)
DNA (465bp) protein (155aa)
ribH; 6,7-dimethyl-8-ribityllumazine synthase RibH (EC:2.5.1.78)
lumazine-synth: 6,7-dimethyl-8-ribityl (db=HMMTigr db_id=TIGR00114 from=13 to=150 evalue=1.1e-76 interpro_id=IPR002180 interpro_description=6,7-dimethyl-8-ribityllumazine synthase GO=Biological Process: riboflavin biosynthetic process (GO:0009231), Cellular Component: riboflavin synthase complex (GO:0009349))
Lumazine synthase (db=superfamily db_id=SSF52121 from=1 to=153 evalue=1.3e-61 interpro_id=IPR002180 interpro_description=6,7-dimethyl-8-ribityllumazine synthase GO=Biological Process: riboflavin biosynthetic process (GO:0009231), Cellular Component: riboflavin synthase complex (GO:0009349))
6,7-DIMETHYL-8-RIBITYLLUMAZINE SYNTHASE (DMRL SYNTHASE) (LUMAZINE SYNTHASE) (db=HMMPanther db_id=PTHR21058 from=2 to=154 evalue=2.7e-61 interpro_id=IPR002180 interpro_description=6,7-dimethyl-8-ribityllumazine synthase GO=Biological Process: riboflavin biosynthetic process (GO:0009231), Cellular Component: riboflavin synthase complex (GO:0009349))
MEL_B1_2_11
Acinetobacter sp. CAG:196, Melainabacteria, Bacteria

Not on your lists

9042..10043
DNA (1002bp) protein (334aa)
Putative ribosome biogenesis GTPase RsgA n=1 Tax=Coprococcus comes ATCC 27758 RepID=C0B8X4_9FIRM (db=UNIREF evalue=0.0 bit_score=244.0 identity=43.2 coverage=85.02994011976048)
ribosome small subunit-dependent GTPase A
seg (db=Seg db_id=seg from=275 to=287)
TIGR00157: ribosome small subunit-dependent (db=HMMTigr db_id=TIGR00157 from=38 to=277 evalue=1.3e-63 interpro_id=IPR004881 interpro_description=Ribosome biogenesis GTPase RsgA, putative GO=Molecular Function: GTPase activity (GO:0003924), Molecular Function: GTP binding (GO:0005525))
MEL_B1_2_12
Acinetobacter sp. CAG:196, Melainabacteria, Bacteria

Not on your lists

10027..10899
DNA (873bp) protein (291aa)
farnesyl-diphosphate synthase (EC:2.5.1.10)
POLYPRENYL_SYNTHASE_1 (db=PatternScan db_id=PS00723 from=73 to=89 evalue=0.0 interpro_id=IPR000092 interpro_description=Polyprenyl synthetase GO=Biological Process: isoprenoid biosynthetic process (GO:0008299))
POLYPRENYL_SYNTHASE_2 (db=PatternScan db_id=PS00444 from=208 to=220 evalue=0.0 interpro_id=IPR000092 interpro_description=Polyprenyl synthetase GO=Biological Process: isoprenoid biosynthetic process (GO:0008299))
GERANYL GERANYL PYROPHOSPHATE SYNTHASE (db=HMMPanther db_id=PTHR12001:SF8 from=1 to=290 evalue=2.7e-96)
MEL_B1_2_13
Acinetobacter sp. CAG:196, Melainabacteria, Bacteria

Not on your lists

10896..11360
DNA (465bp) protein (155aa)
hypothetical protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=134 to=153)
transmembrane_regions (db=TMHMM db_id=tmhmm from=65 to=87)
transmembrane_regions (db=TMHMM db_id=tmhmm from=13 to=35)
MEL_B1_2_14
Acinetobacter sp. CAG:196, Melainabacteria, Bacteria

Not on your lists


11555..12184
DNA (630bp) protein (210aa)
30S ribosomal protein S5 n=2 Tax=Synechococcus elongatus RepID=RS5_SYNE7 (db=UNIREF evalue=0.0 bit_score=213.0 identity=61.7 coverage=81.9047619047619)
rpsE; 30S ribosomal protein S5
seg (db=Seg db_id=seg from=2 to=29)
seg (db=Seg db_id=seg from=66 to=73)
MEL_B1_2_15
Acinetobacter sp. CAG:196, Melainabacteria, Bacteria

Not on your lists


12235..12420
DNA (186bp) protein (62aa)
50S ribosomal protein L30
50S ribosomal protein L30 n=2 Tax=Desulfotomaculum RepID=F0DP32_9FIRM (db=UNIREF evalue=1.3e-08 bit_score=64.0 identity=55.6 coverage=85.48387096774194)
rpmD_bact: ribosomal protein L30 (db=HMMTigr db_id=TIGR01308 from=7 to=61 evalue=4.0e-20 interpro_id=IPR005996 interpro_description=Ribosomal protein L30, bacterial-type GO=Molecular Function: structural constituent of ribosome (GO:0003735), Biological Process: translation (GO:0006412), Cellular Component: large ribosomal subunit (GO:0015934))
Ribosomal protein L30p (db=HMMPIR db_id=PIRSF002211 from=1 to=60 evalue=1.5e-19 interpro_id=IPR005996 interpro_description=Ribosomal protein L30, bacterial-type GO=Molecular Function: structural constituent of ribosome (GO:0003735), Biological Process: translation (GO:0006412), Cellular Component: large ribosomal subunit (GO:0015934))
MEL_B1_2_16
Acinetobacter sp. CAG:196, Melainabacteria, Bacteria

Not on your lists


12450..12902
DNA (453bp) protein (151aa)
rplO; 50S ribosomal protein L15
RIBOSOMAL_L15 (db=PatternScan db_id=PS00475 from=114 to=144 evalue=0.0 interpro_id=IPR001196 interpro_description=Ribosomal protein L15, conserved site GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
rplO_bact: ribosomal protein L15 (db=HMMTigr db_id=TIGR01071 from=6 to=148 evalue=2.1e-48 interpro_id=IPR005749 interpro_description=Ribosomal protein L15, bacterial-type GO=Molecular Function: structural constituent of ribosome (GO:0003735), Biological Process: translation (GO:0006412), Cellular Component: large ribosomal subunit (GO:0015934))
Ribosomal proteins L15p and L18e (db=superfamily db_id=SSF52080 from=8 to=148 evalue=1.3e-42 interpro_id=IPR021131 interpro_description=Ribosomal protein L18e/L15P)
MEL_B1_2_17
Acinetobacter sp. CAG:196, Melainabacteria, Bacteria

Not on your lists


12932..14248
DNA (1317bp) protein (439aa)
UPI00020A9ACF related cluster n=1 Tax=unknown RepID=UPI00020A9ACF (db=UNIREF evalue=0.0 bit_score=396.0 identity=47.0 coverage=95.44419134396355)
preprotein translocase subunit SecY
preprotein translocase subunit SecY
transmembrane_regions (db=TMHMM db_id=tmhmm from=54 to=76)
MEL_B1_2_18
Acinetobacter sp. CAG:196, Melainabacteria, Bacteria

Not on your lists

comp(14455..14889)
DNA (435bp) protein (145aa)
3-dehydroquinate dehydratase
3-dehydroquinate dehydratase, type II (db=HMMPIR db_id=PIRSF001399 from=1 to=144 evalue=1.5e-75 interpro_id=IPR001874 interpro_description=Dehydroquinase, class II GO=Molecular Function: 3-dehydroquinate dehydratase activity (GO:0003855))
aroQ: 3-dehydroquinate dehydratase, type II (db=HMMTigr db_id=TIGR01088 from=2 to=142 evalue=1.2e-70 interpro_id=IPR001874 interpro_description=Dehydroquinase, class II GO=Molecular Function: 3-dehydroquinate dehydratase activity (GO:0003855))
FAMILY NOT NAMED (db=HMMPanther db_id=PTHR21272 from=1 to=144 evalue=6.0e-63 interpro_id=IPR001874 interpro_description=Dehydroquinase, class II GO=Molecular Function: 3-dehydroquinate dehydratase activity (GO:0003855))
MEL_B1_2_19
Acinetobacter sp. CAG:196, Melainabacteria, Bacteria

Not on your lists

14957..15280
DNA (324bp) protein (108aa)
14957..15280 + ( gc_cont=0.383)
Uncharacterized protein {ECO:0000313|EMBL:CCZ49974.1}; TaxID=1262690 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Moraxellaceae; Acinetobacter; environmental samples.;" sou
MEL_B1_2_20
Acinetobacter sp. CAG:196, Melainabacteria, Bacteria

Not on your lists

15283..16074
DNA (792bp) protein (264aa)
GTP cyclohydrolase FolE2 (EC:3.5.4.16)
seg (db=Seg db_id=seg from=223 to=236)
(db=HMMPfam db_id=PF02649 from=1 to=258 evalue=9.4e-84 interpro_id=IPR003801 interpro_description=GTP cyclohydrolase FolE2/MptA)
TIGR00294: conserved hypothetical protein T (db=HMMTigr db_id=TIGR00294 from=3 to=263 evalue=1.3e-14 interpro_id=IPR003801 interpro_description=GTP cyclohydrolase FolE2/MptA)
MEL_B1_2_21
Acinetobacter sp. CAG:196, Melainabacteria, Bacteria

Not on your lists

16080..17498
DNA (1419bp) protein (473aa)
hypothetical protein
seg (db=Seg db_id=seg from=285 to=296)
seg (db=Seg db_id=seg from=247 to=269)
seg (db=Seg db_id=seg from=188 to=197)
MEL_B1_2_22
Acinetobacter sp. CAG:196, Melainabacteria, Bacteria

Not on your lists

17555..19366
DNA (1812bp) protein (604aa)
hypothetical protein
Putative uncharacterized protein n=1 Tax=Thermoanaerobacterium thermosaccharolyticum DSM 571 RepID=D9TLU3_THETC (db=UNIREF evalue=0.0 bit_score=263.0 identity=28.8 coverage=89.56953642384106)
transmembrane_regions (db=TMHMM db_id=tmhmm from=5 to=27)
seg (db=Seg db_id=seg from=343 to=354)
MEL_B1_2_23
Acinetobacter sp. CAG:196, Melainabacteria, Bacteria

Not on your lists

19356..19544
DNA (189bp) protein (63aa)
19356..19544 + ( gc_cont=0.439)
Uncharacterized protein {ECO:0000313|EMBL:CCZ49978.1}; TaxID=1262690 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Moraxellaceae; Acinetobacter; environmental samples.;" sou
MEL_B1_2_24
Acinetobacter sp. CAG:196, Melainabacteria, Bacteria

Not on your lists

19595..20830
DNA (1236bp) protein (412aa)
Xaa-His dipeptidase
ARGE_DAPE_CPG2_1 (db=PatternScan db_id=PS00758 from=69 to=78 evalue=0.0 interpro_id=IPR001261 interpro_description=ArgE/DapE/ACY1/CPG2/YscS, conserved site GO=Biological Process: proteolysis (GO:0006508), Molecular Function: metallopeptidase activity (GO:0008237))
Zn-dependent exopeptidases (db=superfamily db_id=SSF53187 from=8 to=409 evalue=3.7e-42)
no description (db=Gene3D db_id=G3DSA:3.40.630.10 from=7 to=410 evalue=5.0e-38)
MEL_B1_2_25
Acinetobacter sp. CAG:196, Melainabacteria, Bacteria

Not on your lists

20911..21216
DNA (306bp) protein (102aa)
20911..21216 + ( gc_cont=0.343)
Uncharacterized protein {ECO:0000313|EMBL:CCZ49980.1}; TaxID=1262690 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Moraxellaceae; Acinetobacter; environmental samples.;" sou
MEL_B1_2_26
Acinetobacter sp. CAG:196, Melainabacteria, Bacteria

Not on your lists

comp(21247..21996)
DNA (750bp) protein (250aa)
seg (db=Seg db_id=seg from=237 to=249)
seg (db=Seg db_id=seg from=3 to=16)
coiled-coil (db=Coil db_id=coil from=228 to=249 evalue=NA)
(db=HMMPfam db_id=PF00004 from=2 to=120 evalue=3.4e-21 interpro_id=IPR003959 interpro_description=ATPase, AAA-type, core GO=Molecular Function: ATP binding (GO:0005524))
MEL_B1_2_27
Acinetobacter sp. CAG:196, Melainabacteria, Bacteria

Not on your lists

comp(21945..22355)
DNA (411bp) protein (137aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=15 to=32)
seg (db=Seg db_id=seg from=124 to=136)
Proteasome-activating nucleotidase {ECO:0000313|EMBL:CCZ49981.1}; TaxID=1262690 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Moraxellaceae; Acinetobacter; environmental sam
MEL_B1_2_28
Acinetobacter sp. CAG:196, Melainabacteria, Bacteria

Not on your lists

comp(22498..23499)
DNA (1002bp) protein (334aa)
Putative uncharacterized protein n=8 Tax=Clostridiales RepID=C7HCF4_CLOTM (db=UNIREF evalue=0.0 bit_score=561.0 identity=82.1 coverage=98.20359281437125)
hypothetical protein
hypothetical protein
seg (db=Seg db_id=seg from=75 to=81)
MEL_B1_2_29
Acinetobacter sp. CAG:196, Melainabacteria, Bacteria

Not on your lists

comp(23613..24314)
DNA (702bp) protein (234aa)
Putative uncharacterized protein n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0PBQ4_9FIRM (db=UNIREF evalue=0.0 bit_score=366.0 identity=78.0 coverage=96.58119658119658)
NifU-related domain containing protein
NifU-related domain containing protein
SufE/NifU (db=superfamily db_id=SSF82649 from=58 to=104 evalue=8.3e-06)
MEL_B1_2_30
Acinetobacter sp. CAG:196, Melainabacteria, Bacteria

Not on your lists

comp(24428..24649)
DNA (222bp) protein (74aa)
Putative uncharacterized protein n=1 Tax=Ruminococcus lactaris ATCC 29176 RepID=B5CR23_9FIRM (db=UNIREF evalue=1.3e-07 bit_score=61.0 identity=40.6 coverage=85.13513513513513)
lambda repressor-like DNA-binding domains (db=superfamily db_id=SSF47413 from=1 to=69 evalue=7.7e-16 interpro_id=IPR010982 interpro_description=Lambda repressor-like, DNA-binding GO=Molecular Function: DNA binding (GO:0003677))
no description (db=Gene3D db_id=G3DSA:1.10.260.40 from=10 to=72 evalue=2.1e-14 interpro_id=IPR010982 interpro_description=Lambda repressor-like, DNA-binding GO=Molecular Function: DNA binding (GO:0003677))
(db=HMMPfam db_id=PF01381 from=15 to=68 evalue=1.2e-12 interpro_id=IPR001387 interpro_description=Helix-turn-helix type 3 GO=Molecular Function: sequence-specific DNA binding (GO:0043565))
Displaying items 1-30 of 264 in total

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