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MEL_B2_5

Search features with annotation key words

Displaying items 61-90 of 183 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
MEL_B2_5_61
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

comp(58219..58599)
DNA (381bp) protein (127aa)
58219..58599 - ( gc_cont=0.328)
Uncharacterized protein {ECO:0000313|EMBL:CDC21716.1}; TaxID=1262794 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium
MEL_B2_5_62
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

comp(58739..58939)
DNA (201bp) protein (67aa)
(db=HMMPfam db_id=PF00196 from=2 to=57 evalue=1.8e-11 interpro_id=IPR000792 interpro_description=Transcription regulator LuxR, C-terminal GO=Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Cellular Component: intracellular (GO:0005622), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sequence-specific DNA binding (GO:0043565))
C-terminal effector domain of the bipartite response regulators (db=superfamily db_id=SSF46894 from=1 to=58 evalue=2.3e-07 interpro_id=IPR016032 interpro_description=Signal transduction response regulator, C-terminal effector GO=Molecular Function: two-component response regulator activity (GO:0000156), Biological Process: two-component signal transduction system (phosphorelay) (GO:0000160), Molecular Function: DNA binding (GO:0003677), Cellular Component: intracellular (GO:0005622), Biological Process: reg
no description (db=Gene3D db_id=G3DSA:1.10.10.10 from=1 to=65 evalue=0.0001 interpro_id=IPR011991 interpro_description=Winged helix-turn-helix transcription repressor DNA-binding)
no description (db=HMMSmart db_id=SM00421 from=3 to=57 evalue=0.00051 interpro_id=IPR000792 interpro_description=Transcription regulator LuxR, C-terminal GO=Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Cellular Component: intracellular (GO:0005622), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sequence-specific DNA binding (GO:0043565))
MEL_B2_5_63
unknown

Not on your lists

comp(59002..59202)
DNA (201bp) protein (67aa)
seg (db=Seg db_id=seg from=10 to=17)
MEL_B2_5_64
unknown

Not on your lists

comp(59202..59642)
DNA (441bp) protein (147aa)
coiled-coil (db=Coil db_id=coil from=48 to=69 evalue=NA)
coiled-coil (db=Coil db_id=coil from=80 to=115 evalue=NA)
MEL_B2_5_65
unknown

Not on your lists

comp(59632..59817)
DNA (186bp) protein (62aa)
59632..59817 - ( gc_cont=0.371)
MEL_B2_5_66
unknown

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comp(59838..59930)
DNA (93bp) protein (31aa)
seg (db=Seg db_id=seg from=3 to=11)
MEL_B2_5_67
unknown

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comp(59930..60208)
DNA (279bp) protein (93aa)
59930..60208 - ( gc_cont=0.355)
MEL_B2_5_68
unknown

Not on your lists

comp(60208..60414)
DNA (207bp) protein (69aa)
60208..60414 - ( gc_cont=0.362)
MEL_B2_5_69
unknown

Not on your lists

comp(60401..60889)
DNA (489bp) protein (163aa)
60401..60889 - ( gc_cont=0.364)
MEL_B2_5_70
unknown

Not on your lists

comp(60882..61169)
DNA (288bp) protein (96aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=5 to=24)
MEL_B2_5_71
unknown

Not on your lists

comp(61162..61551)
DNA (390bp) protein (130aa)
61162..61551 - ( gc_cont=0.359)
MEL_B2_5_72
Ruminococcus sp. CAG:254, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(61553..62185)
DNA (633bp) protein (211aa)
seg (db=Seg db_id=seg from=50 to=64)
seg (db=Seg db_id=seg from=2 to=15)
coiled-coil (db=Coil db_id=coil from=44 to=79 evalue=NA)
Uncharacterized protein {ECO:0000313|EMBL:CCZ83667.1}; TaxID=1262953 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococ
MEL_B2_5_73
Clostridium sp. CAG:768, Melainabacteria, Bacteria

Not on your lists

comp(62127..62852)
DNA (726bp) protein (242aa)
Prophage LambdaBa04, DNA replication protein DnaC
Prophage LambdaBa04, DNA replication protein DnaC, putative n=32 Tax=root RepID=Q81Z35_BACAN (db=UNIREF evalue=3.9e-24 bit_score=117.0 identity=35.0 coverage=96.28099173553719)
coiled-coil (db=Coil db_id=coil from=38 to=59 evalue=NA)
seg (db=Seg db_id=seg from=39 to=52)
MEL_B2_5_74
GWB1_OP11_49_7, Gottesmanbacteria, Microgenomates, Bacteria

Not on your lists

comp(62840..63547)
DNA (708bp) protein (236aa)
phage protein
Phage protein n=1 Tax=Alkaliphilus metalliredigens QYMF RepID=A6TLJ9_ALKMQ (db=UNIREF evalue=6.3e-27 bit_score=127.0 identity=36.8 coverage=64.40677966101694)
seg (db=Seg db_id=seg from=108 to=144)
coiled-coil (db=Coil db_id=coil from=174 to=195 evalue=NA)
MEL_B2_5_75
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

comp(63544..63762)
DNA (219bp) protein (73aa)
63544..63762 - ( gc_cont=0.384)
Uncharacterized protein {ECO:0000313|EMBL:CDC21702.1}; TaxID=1262794 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium
MEL_B2_5_76
Clostridium kluyveri, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(63860..64639)
DNA (780bp) protein (260aa)
hypothetical protein
Uncharacterized protein n=2 Tax=Clostridium kluyveri RepID=A5N2F4_CLOK5
Uncharacterized protein {ECO:0000313|EMBL:BAH07964.1}; TaxID=583346 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium kluyveri (strain NBRC 1
MEL_B2_5_77
Thermosipho melanesiensis, Thermosipho, Thermotogales, Thermotogae, Thermotogae, Bacteria

Not on your lists

comp(64639..65532)
DNA (894bp) protein (298aa)
Phage-related protein predicted endonuclease-like protein n=1 Tax=Thermosipho melanesiensis BI429 RepID=A6LN19_THEM4 (db=UNIREF evalue=0.0 bit_score=213.0 identity=37.2 coverage=97.6510067114094)
Phage-like protein endonuclease-like protein
coiled-coil (db=Coil db_id=coil from=215 to=243 evalue=NA)
Restriction endonuclease-like (db=superfamily db_id=SSF52980 from=5 to=190 evalue=2.3e-29 interpro_id=IPR011335 interpro_description=Restriction endonuclease, type II-like)
MEL_B2_5_78
unknown

Not on your lists

comp(65532..65723)
DNA (192bp) protein (64aa)
65532..65723 - ( gc_cont=0.354)
MEL_B2_5_79
unknown

Not on your lists

comp(65857..66087)
DNA (231bp) protein (77aa)
seg (db=Seg db_id=seg from=30 to=38)
MEL_B2_5_80
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

comp(66335..66484)
DNA (150bp) protein (50aa)
66335..66484 - ( gc_cont=0.313)
Uncharacterized protein {ECO:0000313|EMBL:CDC21694.1}; TaxID=1262794 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium
MEL_B2_5_81
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

66583..67134
DNA (552bp) protein (184aa)
phage repressor
Putative phage repressor n=1 Tax=Brachyspira intermedia PWS/A RepID=G0EP36_BRAIP (db=UNIREF evalue=1.9e-10 bit_score=72.0 identity=31.2 coverage=63.58695652173913)
lambda repressor-like DNA-binding domains (db=superfamily db_id=SSF47413 from=1 to=66 evalue=5.1e-13 interpro_id=IPR010982 interpro_description=Lambda repressor-like, DNA-binding GO=Molecular Function: DNA binding (GO:0003677))
no description (db=Gene3D db_id=G3DSA:1.10.260.40 from=1 to=64 evalue=1.4e-10 interpro_id=IPR010982 interpro_description=Lambda repressor-like, DNA-binding GO=Molecular Function: DNA binding (GO:0003677))
MEL_B2_5_82
unknown

Not on your lists

67131..67598
DNA (468bp) protein (156aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=85 to=104)
transmembrane_regions (db=TMHMM db_id=tmhmm from=50 to=72)
transmembrane_regions (db=TMHMM db_id=tmhmm from=13 to=35)
MEL_B2_5_83
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

comp(67868..68197)
DNA (330bp) protein (110aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=20 to=39)
Uncharacterized protein {ECO:0000313|EMBL:CDC21690.1}; TaxID=1262794 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium
MEL_B2_5_84
Fusobacterium sp. CAG:439, Melainabacteria, Bacteria

Not on your lists

68393..69976
DNA (1584bp) protein (528aa)
DNA recombinase
coiled-coil (db=Coil db_id=coil from=351 to=376 evalue=NA)
coiled-coil (db=Coil db_id=coil from=387 to=408 evalue=NA)
coiled-coil (db=Coil db_id=coil from=429 to=450 evalue=NA)
MEL_B2_5_85
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

comp(70085..70804)
DNA (720bp) protein (240aa)
peptidase M48
seg (db=Seg db_id=seg from=154 to=163)
seg (db=Seg db_id=seg from=195 to=214)
OMA1 HOMOLOG, ZINC METALLOPEPTIDASE (db=HMMPanther db_id=PTHR22726 from=10 to=159 evalue=1.5e-26)
MEL_B2_5_86
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

71050..71361
DNA (312bp) protein (104aa)
seg (db=Seg db_id=seg from=13 to=27)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
Uncharacterized protein {ECO:0000313|EMBL:CDC21901.1}; TaxID=1262794 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium
MEL_B2_5_87
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

71392..71751
DNA (360bp) protein (120aa)
seg (db=Seg db_id=seg from=29 to=41)
transmembrane_regions (db=TMHMM db_id=tmhmm from=10 to=32)
transmembrane_regions (db=TMHMM db_id=tmhmm from=83 to=105)
coiled-coil (db=Coil db_id=coil from=56 to=77 evalue=NA)
MEL_B2_5_88
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

71884..72147
DNA (264bp) protein (88aa)
general stress protein
coiled-coil (db=Coil db_id=coil from=33 to=61 evalue=NA)
seg (db=Seg db_id=seg from=7 to=25)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
MEL_B2_5_89
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

comp(72224..74251)
DNA (2028bp) protein (676aa)
seg (db=Seg db_id=seg from=578 to=592)
Uncharacterized protein {ECO:0000313|EMBL:CDC21898.1}; TaxID=1262794 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium
MEL_B2_5_90
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

comp(74311..75699)
DNA (1389bp) protein (463aa)
Putative uncharacterized protein n=1 Tax=Carboxydothermus hydrogenoformans Z-2901 RepID=Q3A8S4_CARHZ (db=UNIREF evalue=0.0 bit_score=551.0 identity=59.5 coverage=98.27213822894169)
hypothetical protein
hypothetical protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=26)
Displaying items 61-90 of 183 in total

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