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MEL_B2_5

Search features with annotation key words

Displaying items 1-30 of 183 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
MEL_B2_5_1
unknown

Not on your lists

comp(2..70)
DNA (69bp) protein (23aa)
2..70 - ( gc_cont=0.333)
MEL_B2_5_2
Acinetobacter sp. CAG:196, Melainabacteria, Bacteria

Not on your lists

comp(180..3746)
DNA (3567bp) protein (1189aa)
coiled-coil (db=Coil db_id=coil from=987 to=1008 evalue=NA)
coiled-coil (db=Coil db_id=coil from=716 to=737 evalue=NA)
coiled-coil (db=Coil db_id=coil from=664 to=709 evalue=NA)
Uncharacterized protein {ECO:0000313|EMBL:CCZ50553.1}; TaxID=1262690 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Moraxellaceae; Acinetobacter; environmental samples.;" sou
MEL_B2_5_3
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

3857..5185
DNA (1329bp) protein (443aa)
diaminopimelate decarboxylase (EC:4.1.1.20)
diaminopimelate decarboxylase (EC:4.1.1.20)
Diaminopimelate decarboxylase 2 n=1 Tax=Thermoanaerobacter tengcongensis MB4 RepID=Q8R8L4_THETN (db=UNIREF evalue=0.0 bit_score=458.0 identity=53.2 coverage=96.61399548532731)
seg (db=Seg db_id=seg from=194 to=205)
MEL_B2_5_4
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

5195..6121
DNA (927bp) protein (309aa)
hypothetical protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=73 to=95)
transmembrane_regions (db=TMHMM db_id=tmhmm from=51 to=69)
transmembrane_regions (db=TMHMM db_id=tmhmm from=20 to=39)
MEL_B2_5_5
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

6131..6745
DNA (615bp) protein (205aa)
2-dehydro-3-deoxyphosphogluconate aldolase
Aldolase (db=superfamily db_id=SSF51569 from=1 to=202 evalue=2.1e-44)
no description (db=Gene3D db_id=G3DSA:3.20.20.70 from=1 to=204 evalue=1.0e-42 interpro_id=IPR013785 interpro_description=Aldolase-type TIM barrel GO=Molecular Function: catalytic activity (GO:0003824))
(db=HMMPfam db_id=PF01081 from=6 to=182 evalue=1.6e-32 interpro_id=IPR000887 interpro_description=KDPG/KHG aldolase GO=Molecular Function: catalytic activity (GO:0003824), Biological Process: metabolic process (GO:0008152))
MEL_B2_5_6
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

comp(6729..7856)
DNA (1128bp) protein (376aa)
Putative spore maturation protein CgeB n=1 Tax=Butyrivibrio crossotus DSM 2876 RepID=D4RX97_9FIRM (db=UNIREF evalue=1.7e-10 bit_score=73.0 identity=24.1 coverage=77.6595744680851)
seg (db=Seg db_id=seg from=215 to=226)
Uncharacterized protein {ECO:0000313|EMBL:CDC21924.1}; TaxID=1262794 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium
MEL_B2_5_7
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

comp(7949..8299)
DNA (351bp) protein (117aa)
7949..8299 - ( gc_cont=0.302)
Uncharacterized protein {ECO:0000313|EMBL:CDC21923.1}; TaxID=1262794 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium
MEL_B2_5_8
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

comp(8399..9211)
DNA (813bp) protein (271aa)
tyrA; prephenate dehydrogenase TyrA (EC:1.3.1.12)
seg (db=Seg db_id=seg from=4 to=16)
(db=HMMPfam db_id=PF02153 from=30 to=241 evalue=4.8e-52 interpro_id=IPR003099 interpro_description=Prephenate dehydrogenase GO=Molecular Function: prephenate dehydrogenase (NADP+) activity (GO:0004665), Biological Process: tyrosine biosynthetic process (GO:0006571), Molecular Function: prephenate dehydrogenase activity (GO:0008977), Biological Process: oxidation-reduction process (GO:0055114))
PREPHENATE DEHYDROGENASE (db=HMMPanther db_id=PTHR21363 from=1 to=260 evalue=3.1e-51)
MEL_B2_5_9
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

9437..10585
DNA (1149bp) protein (383aa)
PAS/PAC sensor signal transduction histidine kinase
PAS/PAC sensor signal transduction histidine kinase n=1 Tax=Methanohalobium evestigatum Z-7303 RepID=D7E997_METEZ (db=UNIREF evalue=1.6e-35 bit_score=156.0 identity=27.2 coverage=89.55613577023499)
seg (db=Seg db_id=seg from=129 to=142)
SENSOR HISTIDINE KINASE-RELATED (db=HMMPanther db_id=PTHR23283 from=9 to=378 evalue=4.9e-43)
MEL_B2_5_10
Clostridium sp. CAG:768, Melainabacteria, Bacteria

Not on your lists

10603..11661
DNA (1059bp) protein (353aa)
ABC transporter n=6 Tax=Bacillus cereus group RepID=C2PX95_BACCE (db=UNIREF evalue=0.0 bit_score=398.0 identity=56.3 coverage=99.43342776203966)
sugar ABC transporter ATP-binding protein
sugar ABC transporter ATP-binding protein
ABC_TRANSPORTER_1 (db=PatternScan db_id=PS00211 from=134 to=148 evalue=0.0 interpro_id=IPR017871 interpro_description=ABC transporter, conserved site GO=Molecular Function: ATP binding (GO:0005524), Molecular Function: ATPase activity (GO:0016887))
MEL_B2_5_11
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

comp(11750..14392)
DNA (2643bp) protein (881aa)
aldehyde-alcohol dehydrogenase
aldehyde-alcohol dehydrogenase
Aldehyde-alcohol dehydrogenase n=1 Tax=uncultured Termite group 1 bacterium phylotype Rs-D17 RepID=B1H0P6_UNCTG (db=UNIREF evalue=0.0 bit_score=1258.0 identity=69.9 coverage=99.54597048808172)
seg (db=Seg db_id=seg from=271 to=286)
MEL_B2_5_12
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

14666..15046
DNA (381bp) protein (127aa)
14666..15046 + ( gc_cont=0.315)
Uncharacterized protein {ECO:0000313|EMBL:CDC21919.1}; TaxID=1262794 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium
MEL_B2_5_13
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

15040..16173
DNA (1134bp) protein (378aa)
hypothetical protein
seg (db=Seg db_id=seg from=23 to=32)
fkbM_fam: methyltransferase, FkbM family (db=HMMTigr db_id=TIGR01444 from=71 to=210 evalue=1.8e-16 interpro_id=IPR006342 interpro_description=Methyltransferase FkbM)
Uncharacterized protein {ECO:0000313|EMBL:CDC21919.1}; TaxID=1262794 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium
MEL_B2_5_14
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

comp(16163..17008)
DNA (846bp) protein (282aa)
nucleoside-diphosphate sugar epimerase
Putative uncharacterized protein n=1 Tax=Bifidobacterium longum subsp. longum BBMN68 RepID=E4R278_BIFLM (db=UNIREF evalue=0.0 bit_score=292.0 identity=50.9 coverage=96.09929078014184)
NAD(P)-binding Rossmann-fold domains (db=superfamily db_id=SSF51735 from=1 to=272 evalue=7.5e-46)
NAD DEPENDENT EPIMERASE/DEHYDRATASE (db=HMMPanther db_id=PTHR10366 from=5 to=272 evalue=6.8e-33)
MEL_B2_5_15
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

comp(17031..18314)
DNA (1284bp) protein (428aa)
Uncharacterized protein n=1 Tax=Selenomonas ruminantium subsp. lactilytica TAM6421 RepID=I0GTI5_SELRU (db=UNIREF evalue=0.0 bit_score=456.0 identity=50.3 coverage=98.13084112149532)
hypothetical protein rbh
hypothetical protein rbh
Radical SAM enzymes (db=superfamily db_id=SSF102114 from=10 to=80 evalue=3.1e-11)
MEL_B2_5_16
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

comp(18336..19316)
DNA (981bp) protein (327aa)
glycosyl transferase GT2 family
Nucleotide-diphospho-sugar transferases (db=superfamily db_id=SSF53448 from=6 to=250 evalue=3.2e-50)
no description (db=Gene3D db_id=G3DSA:3.90.550.10 from=6 to=219 evalue=4.1e-47)
GLYCOSYLTRANSFERASE (db=HMMPanther db_id=PTHR22916 from=13 to=293 evalue=1.0e-38)
MEL_B2_5_17
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

comp(19318..19737)
DNA (420bp) protein (140aa)
19318..19737 - ( gc_cont=0.329)
Uncharacterized protein {ECO:0000313|EMBL:CDC21915.1}; TaxID=1262794 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium
MEL_B2_5_18
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

19856..20731
DNA (876bp) protein (292aa)
seg (db=Seg db_id=seg from=143 to=163)
transmembrane_regions (db=TMHMM db_id=tmhmm from=146 to=168)
Uncharacterized protein {ECO:0000313|EMBL:CDC21914.1}; TaxID=1262794 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium
MEL_B2_5_19
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

20828..21574
DNA (747bp) protein (249aa)
hypothetical protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=5 to=27)
seg (db=Seg db_id=seg from=215 to=228)
(db=HMMPfam db_id=PF04402 from=35 to=245 evalue=1.3e-30 interpro_id=IPR007497 interpro_description=Protein of unknown function DUF541)
MEL_B2_5_20
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

comp(21626..22318)
DNA (693bp) protein (231aa)
Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RR20_9CLOT (db=UNIREF evalue=4.4e-41 bit_score=174.0 identity=37.9 coverage=96.1038961038961)
nicotinamide mononucleotide transporter PnuC
transmembrane_regions (db=TMHMM db_id=tmhmm from=83 to=105)
transmembrane_regions (db=TMHMM db_id=tmhmm from=203 to=222)
MEL_B2_5_21
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

22374..23375
DNA (1002bp) protein (334aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=298 to=317)
transmembrane_regions (db=TMHMM db_id=tmhmm from=242 to=264)
transmembrane_regions (db=TMHMM db_id=tmhmm from=129 to=151)
transmembrane_regions (db=TMHMM db_id=tmhmm from=63 to=85)
MEL_B2_5_22
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

comp(23377..23733)
DNA (357bp) protein (119aa)
DUF488 domain-containing protein n=1 Tax=Oxalobacter formigenes OXCC13 RepID=C3X8I9_OXAFO (db=UNIREF evalue=7.6e-37 bit_score=159.0 identity=66.1 coverage=93.27731092436974)
hypothetical protein
(db=HMMPfam db_id=PF04343 from=5 to=112 evalue=2.2e-30 interpro_id=IPR007438 interpro_description=Protein of unknown function DUF488)
DUF488 domain-containing protein {ECO:0000313|EMBL:CDC21910.1}; TaxID=1262794 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Cl
MEL_B2_5_23
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

comp(23804..25336)
DNA (1533bp) protein (511aa)
hydroxylamine reductase
hydroxylamine reductase
Hydroxylamine reductase 3 n=2 Tax=Clostridium RepID=H2JER9_9CLOT (db=UNIREF evalue=0.0 bit_score=748.0 identity=69.5 coverage=99.60861056751467)
hybrid_clust: hydroxylamine reductase (db=HMMTigr db_id=TIGR01703 from=4 to=509 evalue=9.0e-283 interpro_id=IPR010048 interpro_description=Hybrid cluster protein GO=Cellular Component: cytoplasm (GO:0005737), Molecular Function: oxidoreductase activity, acting on other nitrogenous compounds as donors (GO:0016661), Molecular Function: iron-sulfur cluster binding (GO:0051536), Biological Process: oxidation-reduction process (GO:0055114))
MEL_B2_5_24
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

25426..26055
DNA (630bp) protein (210aa)
Cyclic nucleotide-binding protein n=3 Tax=Clostridium RepID=E7GPN2_CLOSY (db=UNIREF evalue=1.7e-39 bit_score=168.0 identity=40.6 coverage=97.61904761904762)
cAMP-binding proteins-catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases
seg (db=Seg db_id=seg from=116 to=124)
coiled-coil (db=Coil db_id=coil from=175 to=196 evalue=NA)
MEL_B2_5_25
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

comp(26050..27042)
DNA (993bp) protein (331aa)
Putative uncharacterized protein n=1 Tax=Ruminococcus lactaris ATCC 29176 RepID=B5CNE0_9FIRM (db=UNIREF evalue=0.0 bit_score=414.0 identity=63.4 coverage=94.5619335347432)
Sugar kinases, ribokinase family (EC:2.7.1.4)
Sugar kinases, ribokinase family (EC:2.7.1.4)
PFKB_KINASES_2 (db=PatternScan db_id=PS00584 from=256 to=269 evalue=0.0 interpro_id=IPR002173 interpro_description=Carbohydrate/puine kinase, PfkB, conserved site GO=Molecular Function: phosphotransferase activity, alcohol group as acceptor (GO:0016773))
MEL_B2_5_26
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

comp(27077..27706)
DNA (630bp) protein (210aa)
seg (db=Seg db_id=seg from=27 to=44)
Uncharacterized protein {ECO:0000313|EMBL:CDC21906.1}; TaxID=1262794 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium
MEL_B2_5_27
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

27780..28532
DNA (753bp) protein (251aa)
27780..28532 + ( gc_cont=0.304)
Uncharacterized protein {ECO:0000313|EMBL:CDC21905.1}; TaxID=1262794 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium
MEL_B2_5_28
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

28579..31437
DNA (2859bp) protein (953aa)
Putative uncharacterized protein n=3 Tax=Lachnospiraceae RepID=A5ZNW3_9FIRM (db=UNIREF evalue=0.0 bit_score=1067.0 identity=54.8 coverage=99.58027282266528)
hypothetical protein
hypothetical protein
seg (db=Seg db_id=seg from=83 to=97)
MEL_B2_5_29
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

31438..33300
DNA (1863bp) protein (621aa)
Putative uncharacterized protein n=1 Tax=Bacteroides intestinalis DSM 17393 RepID=B3CI70_9BACE (db=UNIREF evalue=0.0 bit_score=765.0 identity=58.8 coverage=99.6779388083736)
DNA methylase N-4/N-6 domain-containing protein
DNA methylase N-4/N-6 domain-containing protein
seg (db=Seg db_id=seg from=109 to=120)
MEL_B2_5_30
unknown

Not on your lists

33380..33583
DNA (204bp) protein (68aa)
33380..33583 + ( gc_cont=0.328)
Displaying items 1-30 of 183 in total

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