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MEL_B2_11

Search features with annotation key words

Displaying items 31-60 of 64 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
MEL_B2_11_31
Clostridium sp. CAG:306, Melainabacteria, Bacteria

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27141..27341
DNA (201bp) protein (67aa)
LSU ribosomal protein L31P
RIBOSOMAL_L31 (db=PatternScan db_id=PS01143 from=34 to=55 evalue=0.0 interpro_id=IPR002150 interpro_description=Ribosomal protein L31 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
L31: ribosomal protein L31 (db=HMMTigr db_id=TIGR00105 from=1 to=66 evalue=8.3e-38 interpro_id=IPR002150 interpro_description=Ribosomal protein L31 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
(db=HMMPfam db_id=PF01197 from=1 to=65 evalue=1.9e-30 interpro_id=IPR002150 interpro_description=Ribosomal protein L31 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
MEL_B2_11_32
Clostridium sp. CAG:306, Melainabacteria, Bacteria

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comp(27469..29631)
DNA (2163bp) protein (721aa)
Putative uncharacterized protein n=1 Tax=Sutterella wadsworthensis 3_1_45B RepID=E7H5U6_9BURK (db=UNIREF evalue=0.0 bit_score=1019.0 identity=71.5 coverage=97.2260748959778)
CoA-binding protein
CoA-binding protein
coiled-coil (db=Coil db_id=coil from=549 to=570 evalue=NA)
MEL_B2_11_33
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

comp(29748..30170)
DNA (423bp) protein (141aa)
29748..30170 - ( gc_cont=0.322)
Uncharacterized protein {ECO:0000313|EMBL:CDC21950.1}; TaxID=1262794 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium
MEL_B2_11_34
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

comp(30183..30800)
DNA (618bp) protein (206aa)
radical SAM protein
coiled-coil (db=Coil db_id=coil from=174 to=195 evalue=NA)
Radical SAM enzymes (db=superfamily db_id=SSF102114 from=12 to=171 evalue=4.0e-20)
(db=HMMPfam db_id=PF04055 from=14 to=174 evalue=3.1e-10 interpro_id=IPR007197 interpro_description=Radical SAM GO=Molecular Function: catalytic activity (GO:0003824), Molecular Function: iron-sulfur cluster binding (GO:0051536))
MEL_B2_11_35
Clostridium sp. CAG:306, Melainabacteria, Bacteria

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30969..31253
DNA (285bp) protein (95aa)
hypothetical protein
lambda repressor-like DNA-binding domains (db=superfamily db_id=SSF47413 from=26 to=94 evalue=1.2e-14 interpro_id=IPR010982 interpro_description=Lambda repressor-like, DNA-binding GO=Molecular Function: DNA binding (GO:0003677))
no description (db=Gene3D db_id=G3DSA:1.10.260.40 from=35 to=94 evalue=1.3e-13 interpro_id=IPR010982 interpro_description=Lambda repressor-like, DNA-binding GO=Molecular Function: DNA binding (GO:0003677))
no description (db=HMMSmart db_id=SM00530 from=38 to=93 evalue=1.2e-12 interpro_id=IPR001387 interpro_description=Helix-turn-helix type 3 GO=Molecular Function: sequence-specific DNA binding (GO:0043565))
MEL_B2_11_36
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

comp(31250..31873)
DNA (624bp) protein (208aa)
coiled-coil (db=Coil db_id=coil from=158 to=193 evalue=NA)
seg (db=Seg db_id=seg from=86 to=97)
Uncharacterized protein {ECO:0000313|EMBL:CDC21947.1}; TaxID=1262794 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium
MEL_B2_11_37
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

comp(31978..32205)
DNA (228bp) protein (76aa)
31978..32205 - ( gc_cont=0.368)
Uncharacterized protein {ECO:0000313|EMBL:CDC21946.1}; TaxID=1262794 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium
MEL_B2_11_38
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

comp(32310..32696)
DNA (387bp) protein (129aa)
seg (db=Seg db_id=seg from=2 to=13)
seg (db=Seg db_id=seg from=21 to=42)
Uncharacterized protein {ECO:0000313|EMBL:CDC21945.1}; TaxID=1262794 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium
MEL_B2_11_39
Clostridium sp. CAG:306, Melainabacteria, Bacteria

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32859..34301
DNA (1443bp) protein (481aa)
Glutamate--tRNA ligase n=1 Tax=Thermovibrio ammonificans HB-1 RepID=E8T5J9_THEA1 (db=UNIREF evalue=0.0 bit_score=498.0 identity=51.7 coverage=98.96049896049897)
glutamyl-tRNA synthetase
glutamyl-tRNA synthetase
AA_TRNA_LIGASE_I (db=PatternScan db_id=PS00178 from=10 to=21 evalue=0.0 interpro_id=IPR001412 interpro_description=Aminoacyl-tRNA synthetase, class I, conserved site GO=Molecular Function: nucleotide binding (GO:0000166), Molecular Function: aminoacyl-tRNA ligase activity (GO:0004812), Molecular Function: ATP binding (GO:0005524), Cellular Component: cytoplasm (GO:0005737), Biological Process: tRNA aminoacylation for protein translation (GO:0006418))
MEL_B2_11_40
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

34303..34968
DNA (666bp) protein (222aa)
hypothetical protein
(db=HMMPfam db_id=PF04301 from=5 to=211 evalue=5.2e-27 interpro_id=IPR007398 interpro_description=Protein of unknown function DUF452)
Uncharacterized protein {ECO:0000313|EMBL:CDC21943.1}; TaxID=1262794 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium
hypothetical protein; K09789 hypothetical protein alias=MEL_A1_C00001G00719 id=152332 tax=MEL_A1 species=Calditerrivibrio nitroreducens genus=Calditerrivibrio taxon_order=Deferribacterales taxon_class=Deferribacteres phylum=Deferribacteres
MEL_B2_11_41
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

34961..35710
DNA (750bp) protein (250aa)
biotin biosynthesis protein BioC
BioC: biotin biosynthesis protein BioC (db=HMMTigr db_id=TIGR02072 from=10 to=247 evalue=1.9e-76 interpro_id=IPR011814 interpro_description=Biotin biosynthesis protein BioC GO=Biological Process: biotin biosynthetic process (GO:0009102))
S-adenosyl-L-methionine-dependent methyltransferases (db=superfamily db_id=SSF53335 from=5 to=248 evalue=1.6e-25)
(db=HMMPfam db_id=PF08241 from=49 to=140 evalue=6.8e-11 interpro_id=IPR013216 interpro_description=Methyltransferase type 11 GO=Biological Process: metabolic process (GO:0008152), Molecular Function: methyltransferase activity (GO:0008168))
MEL_B2_11_42
Clostridium sp. CAG:768, Melainabacteria, Bacteria

Not on your lists

comp(35700..37745)
DNA (2046bp) protein (682aa)
Alpha-amylase family protein n=1 Tax=Methanosarcina acetivorans C2A RepID=Q8TQA8_METAC (db=UNIREF evalue=0.0 bit_score=681.0 identity=51.5 coverage=90.6158357771261)
alpha-amylase
alpha-amylase
seg (db=Seg db_id=seg from=524 to=540)
predicted extracellular kelly wrighton (11/17/12)
MEL_B2_11_43
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

37887..39203
DNA (1317bp) protein (439aa)
Na+/H+ antiporter family protein n=3 Tax=Clostridium RepID=E7GHB4_CLOSY (db=UNIREF evalue=0.0 bit_score=524.0 identity=58.2 coverage=97.9498861047836)
Na+/H+ antiporter NhaC
Na+/H+ antiporter NhaC
seg (db=Seg db_id=seg from=378 to=394)
MEL_B2_11_44
Clostridium sp. CAG:813, Melainabacteria, Bacteria

Not on your lists

comp(39225..40619)
DNA (1395bp) protein (465aa)
39225..40619 - ( gc_cont=0.333)
Uncharacterized protein {ECO:0000313|EMBL:CDE97712.1}; TaxID=1262843 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium
MEL_B2_11_45
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

comp(40699..41415)
DNA (717bp) protein (239aa)
Pirin domain-containing protein
seg (db=Seg db_id=seg from=63 to=74)
RmlC-like cupins (db=superfamily db_id=SSF51182 from=1 to=236 evalue=2.3e-68 interpro_id=IPR011051 interpro_description=Cupin, RmlC-type)
Pirin (db=HMMPIR db_id=PIRSF006232 from=1 to=232 evalue=3.7e-48 interpro_id=IPR012093 interpro_description=Pirin)
MEL_B2_11_46
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

comp(41541..42305)
DNA (765bp) protein (255aa)
(db=HMMPfam db_id=PF05704 from=19 to=103 evalue=1.4e-08 interpro_id=IPR008441 interpro_description=Capsular polysaccharide synthesis)
Uncharacterized protein {ECO:0000313|EMBL:CDC21937.1}; TaxID=1262794 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium
MEL_B2_11_47
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

42526..43185
DNA (660bp) protein (220aa)
lambda repressor-like DNA-binding domains (db=superfamily db_id=SSF47413 from=1 to=70 evalue=3.1e-16 interpro_id=IPR010982 interpro_description=Lambda repressor-like, DNA-binding GO=Molecular Function: DNA binding (GO:0003677))
no description (db=Gene3D db_id=G3DSA:1.10.260.40 from=8 to=116 evalue=2.1e-14 interpro_id=IPR010982 interpro_description=Lambda repressor-like, DNA-binding GO=Molecular Function: DNA binding (GO:0003677))
no description (db=HMMSmart db_id=SM00530 from=11 to=66 evalue=2.5e-14 interpro_id=IPR001387 interpro_description=Helix-turn-helix type 3 GO=Molecular Function: sequence-specific DNA binding (GO:0043565))
(db=HMMPfam db_id=PF01381 from=12 to=64 evalue=5.7e-12 interpro_id=IPR001387 interpro_description=Helix-turn-helix type 3 GO=Molecular Function: sequence-specific DNA binding (GO:0043565))
MEL_B2_11_48
Clostridium sp. CAG:768, Melainabacteria, Bacteria

Not on your lists

comp(43188..45782)
DNA (2595bp) protein (865aa)
DNA mismatch repair protein MutS n=3 Tax=Roseburia intestinalis RepID=C7GE90_9FIRM (db=UNIREF evalue=0.0 bit_score=759.0 identity=44.9 coverage=97.80346820809248)
DNA mismatch repair protein MutS
DNA mismatch repair protein MutS
DNA_MISMATCH_REPAIR_2 (db=PatternScan db_id=PS00486 from=723 to=739 evalue=0.0 interpro_id=IPR000432 interpro_description=DNA mismatch repair protein MutS, C-terminal GO=Molecular Function: ATP binding (GO:0005524), Biological Process: mismatch repair (GO:0006298), Molecular Function: mismatched DNA binding (GO:0030983))
MEL_B2_11_49
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

46051..46866
DNA (816bp) protein (272aa)
metal-dependent hydrolase
Metallo-hydrolase/oxidoreductase (db=superfamily db_id=SSF56281 from=1 to=243 evalue=1.2e-28)
(db=HMMPfam db_id=PF00753 from=21 to=82 evalue=2.4e-11 interpro_id=IPR001279 interpro_description=Beta-lactamase-like GO=Molecular Function: hydrolase activity (GO:0016787))
no description (db=Gene3D db_id=G3DSA:3.60.15.10 from=2 to=80 evalue=9.0e-07)
MEL_B2_11_50
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

46907..47302
DNA (396bp) protein (132aa)
FKBP-type peptidyl-prolyl cis-trans isomerases 2
Peptidyl-prolyl cis-trans isomerase n=1 Tax=Butyrivibrio fibrisolvens RepID=D4J286_BUTFI (db=UNIREF evalue=1.0e-37 bit_score=162.0 identity=61.3 coverage=98.48484848484848)
seg (db=Seg db_id=seg from=32 to=41)
seg (db=Seg db_id=seg from=109 to=131)
MEL_B2_11_51
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

47375..48523
DNA (1149bp) protein (383aa)
Serine-pyruvate/aspartate aminotransferase related enzyme n=4 Tax=Brachyspira RepID=C0QYX1_BRAHW (db=UNIREF evalue=0.0 bit_score=531.0 identity=68.5 coverage=98.69451697127938)
Serine-pyruvate/aspartate aminotransferase related enzyme
Serine-pyruvate/aspartate aminotransferase related enzyme
seg (db=Seg db_id=seg from=268 to=286)
MEL_B2_11_52
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

48691..48912
DNA (222bp) protein (74aa)
lambda repressor-like DNA-binding domains (db=superfamily db_id=SSF47413 from=1 to=69 evalue=3.4e-14 interpro_id=IPR010982 interpro_description=Lambda repressor-like, DNA-binding GO=Molecular Function: DNA binding (GO:0003677))
no description (db=Gene3D db_id=G3DSA:1.10.260.40 from=10 to=73 evalue=6.8e-13 interpro_id=IPR010982 interpro_description=Lambda repressor-like, DNA-binding GO=Molecular Function: DNA binding (GO:0003677))
no description (db=HMMSmart db_id=SM00530 from=13 to=68 evalue=5.6e-10 interpro_id=IPR001387 interpro_description=Helix-turn-helix type 3 GO=Molecular Function: sequence-specific DNA binding (GO:0043565))
(db=HMMPfam db_id=PF01381 from=15 to=66 evalue=5.4e-08 interpro_id=IPR001387 interpro_description=Helix-turn-helix type 3 GO=Molecular Function: sequence-specific DNA binding (GO:0043565))
MEL_B2_11_53
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

comp(48919..49506)
DNA (588bp) protein (196aa)
coiled-coil (db=Coil db_id=coil from=88 to=109 evalue=NA)
Uncharacterized protein {ECO:0000313|EMBL:CDC21929.1}; TaxID=1262794 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium
MEL_B2_11_54
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

comp(49581..50690)
DNA (1110bp) protein (370aa)
3-dehydroquinate synthase
aroB: 3-dehydroquinate synthase (db=HMMTigr db_id=TIGR01357 from=19 to=368 evalue=2.4e-135 interpro_id=IPR016037 interpro_description=3-dehydroquinate synthase AroB GO=Molecular Function: 3-dehydroquinate synthase activity (GO:0003856), Cellular Component: cytoplasm (GO:0005737), Biological Process: aromatic amino acid family biosynthetic process (GO:0009073))
3-dehydroquinate synthase (db=HMMPIR db_id=PIRSF001455 from=1 to=369 evalue=5.9e-107 interpro_id=IPR016037 interpro_description=3-dehydroquinate synthase AroB GO=Molecular Function: 3-dehydroquinate synthase activity (GO:0003856), Cellular Component: cytoplasm (GO:0005737), Biological Process: aromatic amino acid family biosynthetic process (GO:0009073))
3-DEHYDROQUINATE SYNTHASE (db=HMMPanther db_id=PTHR21090:SF1 from=68 to=361 evalue=2.8e-101 interpro_id=IPR016037 interpro_description=3-dehydroquinate synthase AroB GO=Molecular Function: 3-dehydroquinate synthase activity (GO:0003856), Cellular Component: cytoplasm (GO:0005737), Biological Process: aromatic amino acid family biosynthetic process (GO:0009073))
MEL_B2_11_55
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

comp(50674..51201)
DNA (528bp) protein (176aa)
AroK; shikimate kinase
Shikimate kinase n=1 Tax=Thermoanaerobacter tengcongensis MB4 RepID=AROK_THETN (db=UNIREF evalue=4.0e-34 bit_score=150.0 identity=43.1 coverage=92.61363636363636)
SHIKIMATE_KINASE (db=PatternScan db_id=PS01128 from=61 to=86 evalue=0.0 interpro_id=IPR023000 interpro_description=Shikimate kinase, conserved site)
no description (db=Gene3D db_id=G3DSA:3.40.50.300 from=3 to=169 evalue=7.1e-46)
MEL_B2_11_56
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

comp(51194..52288)
DNA (1095bp) protein (365aa)
Chorismate synthase n=1 Tax=Thermincola potens JR RepID=D5X7M1_THEPJ (db=UNIREF evalue=0.0 bit_score=408.0 identity=55.8 coverage=97.53424657534246)
chorismate synthase (EC:4.2.3.5)
chorismate synthase (EC:4.2.3.5)
seg (db=Seg db_id=seg from=234 to=247)
MEL_B2_11_57
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

comp(52376..53845)
DNA (1470bp) protein (490aa)
hypothetical protein
Putative uncharacterized protein n=1 Tax=Lyngbya sp. PCC 8106 RepID=A0YW13_LYNSP (db=UNIREF evalue=1.7e-10 bit_score=73.0 identity=21.1 coverage=48.16326530612245)
seg (db=Seg db_id=seg from=25 to=34)
seg (db=Seg db_id=seg from=39 to=53)
MEL_B2_11_58
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

comp(54189..54899)
DNA (711bp) protein (237aa)
cytochrome c biogenesis protein transmembrane region
transmembrane_regions (db=TMHMM db_id=tmhmm from=173 to=195)
transmembrane_regions (db=TMHMM db_id=tmhmm from=95 to=117)
transmembrane_regions (db=TMHMM db_id=tmhmm from=61 to=83)
MEL_B2_11_59
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

comp(54892..55296)
DNA (405bp) protein (135aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=4 to=21)
Thioredoxin-like (db=superfamily db_id=SSF52833 from=10 to=131 evalue=2.6e-21 interpro_id=IPR012336 interpro_description=Thioredoxin-like fold)
(db=HMMPfam db_id=PF00085 from=26 to=129 evalue=1.3e-15 interpro_id=IPR013766 interpro_description=Thioredoxin domain GO=Biological Process: cell redox homeostasis (GO:0045454))
no description (db=Gene3D db_id=G3DSA:3.40.30.10 from=38 to=132 evalue=4.8e-12 interpro_id=IPR012336 interpro_description=Thioredoxin-like fold)
MEL_B2_11_60
unknown

Not on your lists

55918..56391
DNA (474bp) protein (158aa)
seg (db=Seg db_id=seg from=36 to=55)
Displaying items 31-60 of 64 in total

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