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ACD20_2

Alias: ACD20_8688.83588.14

Search features with annotation key words

Displaying items 31-60 of 69 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD20_2_31

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39330..39845
DNA (516bp) protein (172aa)
nuoC2; NADH dehydrogenase (ubiquinone) (EC:1.6.5.3)
COMPLEX1_30K (db=PatternScan db_id=PS00542 from=124 to=145 evalue=0.0 interpro_id=IPR020396 interpro_description=NADH:ubiquinone oxidoreductase, 30kDa subunit, conserved site)
NuoC_fam: NADH (or F420H2) dehydrogenase, su (db=HMMTigr db_id=TIGR01961 from=45 to=163 evalue=5.5e-59 interpro_id=IPR010218 interpro_description=NADH (or F420H2) dehydrogenase, subunit C GO=Molecular Function: oxidoreductase activity, acting on NADH or NADPH (GO:0016651), Biological Process: oxidation reduction (GO:0055114))
NADH-UBIQUINONE OXIDOREDUCTASE-RELATED (db=HMMPanther db_id=PTHR10884 from=27 to=161 evalue=3.7e-43)
Cytoplasmic. NADH dehydrogenase I subunit C, not cyano kelly wrighton (11/15/12)
ACD20_2_32

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39880..41070
DNA (1191bp) protein (397aa)
NAD(P)H-quinone oxidoreductase subunit H 1 n=1 Tax=Gloeobacter violaceus RepID=NDHH1_GLOVI (db=UNIREF evalue=1.0e-112 bit_score=409.0 identity=51.65 coverage=97.7329974811083)
ndhH; NAD(P)H-quinone oxidoreductase subunit H
ndhH; NAD(P)H-quinone oxidoreductase subunit H
COMPLEX1_49K (db=PatternScan db_id=PS00535 from=46 to=57 evalue=0.0 interpro_id=IPR014029 interpro_description=NADH:ubiquinone oxidoreductase, 49kDa subunit, conserved site)
Cytoplasmic target. cyanobacterial nadh~nuoD in ecoli. see paper by Battchikova kelly wrighton (11/15/12)
ACD20_2_33

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41086..42237
DNA (1152bp) protein (384aa)
ndhA; NADH dehydrogenase subunit H (EC:1.6.5.3)
transmembrane_regions (db=TMHMM db_id=tmhmm from=258 to=280)
transmembrane_regions (db=TMHMM db_id=tmhmm from=290 to=312)
transmembrane_regions (db=TMHMM db_id=tmhmm from=325 to=347)
Cytoplasmic target #3, q module? kelly wrighton (11/15/12)
ACD20_2_34

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42249..42737
DNA (489bp) protein (163aa)
nuoI; NADH dehydrogenase I subunit I
NuoI: NADH-quinone oxidoreductase, chain I (db=HMMTigr db_id=TIGR01971 from=22 to=144 evalue=9.6e-48 interpro_id=IPR010226 interpro_description=NADH-quinone oxidoreductase, chain I GO=Cellular Component: membrane (GO:0016020), Molecular Function: oxidoreductase activity, acting on NADH or NADPH (GO:0016651), Molecular Function: 4 iron, 4 sulfur cluster binding (GO:0051539), Biological Process: oxidation reduction (GO:0055114))
NADH-UBIQUINONE OXIDOREDUCTASE 1, CHAIN 1 (db=HMMPanther db_id=PTHR10849 from=7 to=150 evalue=7.1e-41)
4Fe-4S ferredoxins (db=superfamily db_id=SSF54862 from=39 to=149 evalue=5.9e-24)
cytoplasmic target #4, q module. NdhI=NuoI. not cyano kelly wrighton (11/15/12)
ACD20_2_35

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42755..43336
DNA (582bp) protein (194aa)
ndhG; NADH dehydrogenase subunit J (EC:1.6.5.3)
seg (db=Seg db_id=seg from=57 to=72)
transmembrane_regions (db=TMHMM db_id=tmhmm from=156 to=178)
transmembrane_regions (db=TMHMM db_id=tmhmm from=4 to=26)
membrane-bound. best hit prochlorococcus. cyano kelly wrighton (11/15/12)
ACD20_2_36

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43365..43676
DNA (312bp) protein (104aa)
ndhE; NADH dehydrogenase subunit K (EC:1.6.5.3)
seg (db=Seg db_id=seg from=65 to=86)
seg (db=Seg db_id=seg from=41 to=52)
transmembrane_regions (db=TMHMM db_id=tmhmm from=64 to=86)
membrane-bound. best hits cyano kelly wrighton (11/15/12)
ACD20_2_37

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43683..45608
DNA (1926bp) protein (642aa)
NADH dehydrogenase subunit L (EC:1.6.5.3)
NADH dehydrogenase subunit L (EC:1.6.5.3)
NADH dehydrogenase subunit L n=1 Tax=cyanobacterium UCYN-A RepID=D3EPG1_UCYNA (db=UNIREF evalue=3.0e-131 bit_score=473.0 identity=45.55 coverage=95.3271028037383)
transmembrane_regions (db=TMHMM db_id=tmhmm from=119 to=138)
membrane-bound. cyano kelly wrighton (11/15/12)
ACD20_2_38

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45619..47148
DNA (1530bp) protein (510aa)
proton-translocating NADH-quinone oxidoreductase subunit M
proton-translocating NADH-quinone oxidoreductase subunit M
Proton-translocating NADH-quinone oxidoreductase, chain M n=1 Tax=bacterium S5 RepID=D3BX38_9BACT (db=UNIREF evalue=4.0e-96 bit_score=355.0 identity=47.01 coverage=94.9019607843137)
transmembrane_regions (db=TMHMM db_id=tmhmm from=337 to=359)
membrane-bound. highest % id is cyano. kelly wrighton (11/15/12)
ACD20_2_39

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47158..48642
DNA (1485bp) protein (495aa)
ndhB; NAD(P)H-quinone oxidoreductase subunit 2
transmembrane_regions (db=TMHMM db_id=tmhmm from=69 to=91)
transmembrane_regions (db=TMHMM db_id=tmhmm from=111 to=133)
transmembrane_regions (db=TMHMM db_id=tmhmm from=162 to=184)
membrane-bound. good hits to Cyanobacteria (NADPH and ndhb/n) kelly wrighton (11/15/12)
ACD20_2_40

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comp(48703..49023)
DNA (321bp) protein (107aa)
48703..49023 - (rbs_motif=AGGAGG rbs_spacer=5-10bp)
Uncharacterized protein {ECO:0000313|EMBL:EKE02334.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD20_2_41

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49357..50226
DNA (870bp) protein (290aa)
hydroxymethylbutenyl pyrophosphate reductase
seg (db=Seg db_id=seg from=249 to=263)
coiled-coil (db=Coil db_id=coil from=247 to=268 evalue=NA)
ispH_lytB: 4-hydroxy-3-methylbut-2-enyl dip (db=HMMTigr db_id=TIGR00216 from=5 to=289 evalue=2.3e-88 interpro_id=IPR003451 interpro_description=LytB protein GO=Biological Process: isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway (GO:0019288), Biological Process: oxidation reduction (GO:0055114))
ACD20_2_42

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50231..51340
DNA (1110bp) protein (370aa)
hydroxymethylbutenyl pyrophosphate reductase
seg (db=Seg db_id=seg from=129 to=143)
RIBOSOMALS1 (db=FPrintScan db_id=PR00681 from=98 to=117 evalue=9.3e-42 interpro_id=IPR000110 interpro_description=Ribosomal protein S1 GO=Molecular Function: RNA binding (GO:0003723), Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
RIBOSOMALS1 (db=FPrintScan db_id=PR00681 from=122 to=138 evalue=9.3e-42 interpro_id=IPR000110 interpro_description=Ribosomal protein S1 GO=Molecular Function: RNA binding (GO:0003723), Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
ACD20_2_43

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comp(51419..52459)
DNA (1041bp) protein (347aa)
Putative uncharacterized protein n=1 Tax=Anaerostipes caccae DSM 14662 RepID=B0MGN5_9FIRM (db=UNIREF evalue=3.0e-93 bit_score=345.0 identity=46.44 coverage=97.6945244956772)
Threonine dehydrogenase and related Zn-dependent dehydrogenases (EC:1.1.1.14)
Threonine dehydrogenase and related Zn-dependent dehydrogenases (EC:1.1.1.14)
ADH_ZINC (db=PatternScan db_id=PS00059 from=63 to=77 evalue=0.0 interpro_id=IPR002328 interpro_description=Alcohol dehydrogenase, zinc-containing, conserved site GO=Molecular Function: zinc ion binding (GO:0008270), Molecular Function: oxidoreductase activity (GO:0016491), Biological Process: oxidation reduction (GO:0055114))
cytoplasmic kelly wrighton (11/15/12)
ACD20_2_44

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comp(52456..53469)
DNA (1014bp) protein (338aa)
gutB; L-iditol 2-dehydrogenase (EC:1.1.1.14)
seg (db=Seg db_id=seg from=166 to=179)
ZINC-TYPE ALCOHOL DEHYDROGENASE-RELATED (db=HMMPanther db_id=PTHR11695:SF38 from=10 to=337 evalue=7.5e-56)
ALCOHOL DEHYDROGENASE RELATED (db=HMMPanther db_id=PTHR11695 from=10 to=337 evalue=7.5e-56 interpro_id=IPR002085 interpro_description=Alcohol dehydrogenase superfamily, zinc-containing GO=Molecular Function: zinc ion binding (GO:0008270), Molecular Function: oxidoreductase activity (GO:0016491), Biological Process: oxidation reduction (GO:0055114))
ACD20_2_45

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comp(53582..55348)
DNA (1767bp) protein (589aa)
GTP-binding protein, HflX
GTP-binding protein, HflX
Small GTP-binding protein n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HMU1_9FIRM (db=UNIREF evalue=6.0e-109 bit_score=398.0 identity=47.75 coverage=90.3225806451613)
seg (db=Seg db_id=seg from=350 to=373)
ACD20_2_46

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55584..55865
DNA (282bp) protein (94aa)
55584..55865 + (rbs_motif=AGGAGG rbs_spacer=3-4bp)
Uncharacterized protein {ECO:0000313|EMBL:EKE02340.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD20_2_47

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56118..56438
DNA (321bp) protein (107aa)
coiled-coil (db=Coil db_id=coil from=68 to=89 evalue=NA)
Uncharacterized protein {ECO:0000313|EMBL:EKE02341.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD20_2_48

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56537..58000
DNA (1464bp) protein (488aa)
guaB; inosine-5'-monophosphate dehydrogenase
guaB; inosine-5'-monophosphate dehydrogenase
Inosine-5'-monophosphate dehydrogenase n=1 Tax=Pelobacter carbinolicus DSM 2380 RepID=Q3A591_PELCD (db=UNIREF evalue=0.0 bit_score=697.0 identity=70.04 coverage=98.9754098360656)
seg (db=Seg db_id=seg from=59 to=71)
ACD20_2_49

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58041..59594
DNA (1554bp) protein (518aa)
GMP synthase, large subunit n=1 Tax=Geobacter lovleyi SZ RepID=B3E1W7_GEOLS (db=UNIREF evalue=0.0 bit_score=744.0 identity=68.82 coverage=98.0694980694981)
guaA; GMP synthase
guaA; GMP synthase
GMP SYNTHASE (db=HMMPanther db_id=PTHR11922:SF2 from=9 to=517 evalue=4.8e-277)
ACD20_2_50

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59675..60772
DNA (1098bp) protein (366aa)
metal dependent phosphohydrolase
seg (db=Seg db_id=seg from=54 to=78)
coiled-coil (db=Coil db_id=coil from=46 to=87 evalue=NA)
HD-domain/PDEase-like (db=superfamily db_id=SSF109604 from=176 to=355 evalue=4.2e-28)
ACD20_2_51

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60825..62141
DNA (1317bp) protein (439aa)
trmFO; Methylenetetrahydrofolate-tRNA-(uracil-5-)-methyltransferase TrmFO (EC:2.1.1.74)
trmFO; Methylenetetrahydrofolate-tRNA-(uracil-5-)-methyltransferase TrmFO (EC:2.1.1.74)
Methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase trmFO n=1 Tax=Bacillus licheniformis ATCC 14580 RepID=TRMFO_BACLD (db=UNIREF evalue=9.0e-144 bit_score=513.0 identity=61.4 coverage=90.2050113895216)
seg (db=Seg db_id=seg from=402 to=421)
ACD20_2_52

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comp(62125..62415)
DNA (291bp) protein (97aa)
62125..62415 - (rbs_motif=GGA/GAG/AGG rbs_spacer=11-12bp)
Uncharacterized protein {ECO:0000313|EMBL:EKE02346.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD20_2_53

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62887..64149
DNA (1263bp) protein (421aa)
3-deoxy-D-manno-octulosonic-acid transferase (KDO transferase) n=1 Tax=NC10 bacterium 'Dutch sediment' RepID=D5MG21_9BACT (db=UNIREF evalue=5.0e-78 bit_score=295.0 identity=38.7 coverage=95.4869358669834)
kdtA; 3-deoxy-D-manno-octulosonic-acid transferase (EC:2.-.-.-)
seg (db=Seg db_id=seg from=2 to=17)
transmembrane_regions (db=TMHMM db_id=tmhmm from=2 to=24)
ACD20_2_54
RIFOXYD12_FULL_Deltaproteobacteria_57_12_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(64233..69209)
DNA (4977bp) protein (1659aa)
putative rhizobiocin/RTX toxin and hemolysin-type calcium-binding protein
putative rhizobiocin/RTX toxin and hemolysin-type calcium-binding protein
Rhizobiocin/RTX toxin and hemolysin-type calcium binding protein n=1 Tax=Rhizobium etli CFN 42 RepID=Q2KC97_RHIEC (db=UNIREF evalue=1.0e-115 bit_score=422.0 identity=34.3 coverage=81.5551537070524)
seg (db=Seg db_id=seg from=124 to=138)
ACD20_2_55

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comp(69889..70524)
DNA (636bp) protein (212aa)
threonine efflux protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=182 to=204)
transmembrane_regions (db=TMHMM db_id=tmhmm from=147 to=169)
transmembrane_regions (db=TMHMM db_id=tmhmm from=110 to=132)
ACD20_2_56

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71000..71854
DNA (855bp) protein (285aa)
integrase-recombinase protein n=1 Tax=Paenibacillus larvae subsp. larvae BRL-230010 RepID=UPI000169491B (db=UNIREF evalue=6.0e-80 bit_score=300.0 identity=67.97 coverage=80.7017543859649)
integrase-recombinase protein
seg (db=Seg db_id=seg from=114 to=127)
ACD20_2_57

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72057..72368
DNA (312bp) protein (104aa)
putative nucleotidyltransferase
Nucleotidyltransferase (db=superfamily db_id=SSF81301 from=4 to=103 evalue=1.3e-15)
NTP_transf_2 (db=HMMPfam db_id=PF01909 from=11 to=99 evalue=3.7e-10 interpro_id=IPR002934 interpro_description=Nucleotidyl transferase domain GO=Molecular Function: nucleotidyltransferase activity (GO:0016779))
DNA polymerase beta protein {ECO:0000313|EMBL:EKE02303.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD20_2_58

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72361..72759
DNA (399bp) protein (133aa)
HEPN domain-containing protein
HEPN domain-containing protein n=2 Tax=Leptospira interrogans RepID=Q8F296_LEPIN (db=UNIREF evalue=7.0e-18 bit_score=92.8 identity=39.84 coverage=91.7293233082707)
seg (db=Seg db_id=seg from=69 to=80)
HEPN (db=HMMPfam db_id=PF05168 from=9 to=128 evalue=3.9e-24 interpro_id=IPR007842 interpro_description=HEPN)
ACD20_2_59

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comp(72952..73632)
DNA (681bp) protein (227aa)
seg (db=Seg db_id=seg from=4 to=13)
PROKAR_LIPOPROTEIN (db=ProfileScan db_id=PS51257 from=1 to=16 evalue=6.0)
Uncharacterized protein {ECO:0000313|EMBL:EKE02305.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD20_2_60

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comp(74520..75503)
DNA (984bp) protein (328aa)
magnesium and cobalt transport protein CorA
Magnesium and cobalt transport protein CorA n=1 Tax=Anaerobaculum hydrogeniformans ATCC BAA-1850 RepID=D3L4G0_9BACT (db=UNIREF evalue=4.0e-45 bit_score=185.0 identity=34.26 coverage=96.3414634146341)
transmembrane_regions (db=TMHMM db_id=tmhmm from=267 to=289)
transmembrane_regions (db=TMHMM db_id=tmhmm from=299 to=321)
Displaying items 31-60 of 69 in total

View Taxonomy