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ACD20_2

Alias: ACD20_8688.83588.14

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Displaying items 1-30 of 69 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD20_2_1

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comp(71..916)
DNA (846bp) protein (282aa)
universal stress family protein
Adenine nucleotide alpha hydrolases-like (db=superfamily db_id=SSF52402 from=4 to=134 evalue=6.8e-17)
Adenine nucleotide alpha hydrolases-like (db=superfamily db_id=SSF52402 from=131 to=275 evalue=1.2e-15)
no description (db=Gene3D db_id=G3DSA:3.40.50.620 from=7 to=123 evalue=1.3e-14 interpro_id=IPR014729 interpro_description=Rossmann-like alpha/beta/alpha sandwich fold)
ACD20_2_2

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comp(922..3294)
DNA (2373bp) protein (791aa)
Put. Trehalose/maltose hydrolase n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9FM31_SORC5 (db=UNIREF evalue=4.0e-141 bit_score=506.0 identity=35.03 coverage=96.5865992414665)
glycoside hydrolase family protein
glycoside hydrolase family protein
seg (db=Seg db_id=seg from=745 to=756)
family 65- not in plant degradation putative kelly wrighton (11/15/12)
ACD20_2_3

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comp(3422..5050)
DNA (1629bp) protein (543aa)
glycosyl transferase
Glycosyl transferase n=1 Tax=Clostridium sp. 7_2_43FAA RepID=C1I8B2_9CLOT (db=UNIREF evalue=2.0e-15 bit_score=87.8 identity=24.85 coverage=57.8268876611418)
transmembrane_regions (db=TMHMM db_id=tmhmm from=366 to=385)
transmembrane_regions (db=TMHMM db_id=tmhmm from=331 to=353)
ACD20_2_4

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5338..6309
DNA (972bp) protein (324aa)
Putative branched-chain-amino-acid aminotransferase (BCAT) n=1 Tax=NC10 bacterium 'Dutch sediment' RepID=D5ML16_9BACT (db=UNIREF evalue=1.0e-96 bit_score=356.0 identity=52.16 coverage=92.5925925925926)
ilvE; branched-chain-amino-acid aminotransferase (BCAT) (EC:2.6.1.42)
ilvE; branched-chain-amino-acid aminotransferase (BCAT) (EC:2.6.1.42)
seg (db=Seg db_id=seg from=2 to=15)
ACD20_2_5

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6299..7033
DNA (735bp) protein (245aa)
hypothetical protein
seg (db=Seg db_id=seg from=93 to=104)
transmembrane_regions (db=TMHMM db_id=tmhmm from=223 to=242)
transmembrane_regions (db=TMHMM db_id=tmhmm from=186 to=208)
ACD20_2_6

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comp(7131..7868)
DNA (738bp) protein (246aa)
16S rRNA m(7)G-527 methyltransferase (EC:2.1.1.- 2.1.-.-)
Ribosomal RNA small subunit methyltransferase G n=1 Tax=Clostridium hathewayi DSM 13479 RepID=D3AES3_9CLOT (db=UNIREF evalue=3.0e-42 bit_score=175.0 identity=43.04 coverage=94.7154471544715)
seg (db=Seg db_id=seg from=78 to=97)
no description (db=Gene3D db_id=G3DSA:3.40.50.150 from=2 to=244 evalue=3.2e-62)
ACD20_2_7

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comp(7861..10524)
DNA (2664bp) protein (888aa)
Tetratricopeptide TPR_1 repeat-containing protein
Putative uncharacterized protein n=1 Tax=uncultured archaeon RepID=D1JFG6_9ARCH (db=UNIREF evalue=2.0e-22 bit_score=112.0 identity=25.94 coverage=35.8108108108108)
seg (db=Seg db_id=seg from=521 to=537)
seg (db=Seg db_id=seg from=703 to=717)
ACD20_2_8

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10809..11621
DNA (813bp) protein (271aa)
dihydrodipicolinate reductase (EC:1.3.1.26)
transmembrane_regions (db=TMHMM db_id=tmhmm from=123 to=145)
DAPB (db=PatternScan db_id=PS01298 from=154 to=171 evalue=0.0 interpro_id=IPR022664 interpro_description=Dihydrodipicolinate reductase, conserved site GO=Molecular Function: dihydrodipicolinate reductase activity (GO:0008839), Biological Process: lysine biosynthetic process via diaminopimelate (GO:0009089), Biological Process: oxidation reduction (GO:0055114))
dapB: dihydrodipicolinate reductase (db=HMMTigr db_id=TIGR00036 from=7 to=270 evalue=6.5e-100 interpro_id=IPR011770 interpro_description=Dihydrodipicolinate reductase, bacterial/plant GO=Cellular Component: cytoplasm (GO:0005737), Molecular Function: dihydrodipicolinate reductase activity (GO:0008839), Biological Process: lysine biosynthetic process via diaminopimelate (GO:0009089), Biological Process: oxidation reduction (GO:0055114))
ACD20_2_9

Not on your lists

11635..12669
DNA (1035bp) protein (345aa)
aspartate-semialdehyde dehydrogenase (EC:1.2.1.11)
aspartate-semialdehyde dehydrogenase (EC:1.2.1.11)
Aspartate-semialdehyde dehydrogenase n=3 Tax=Sulfurihydrogenibium RepID=B2V8Q0_SULSY (db=UNIREF evalue=6.0e-105 bit_score=384.0 identity=55.62 coverage=97.3913043478261)
asd_B: aspartate-semialdehyde dehydrogenase (db=HMMTigr db_id=TIGR01296 from=5 to=335 evalue=2.5e-172 interpro_id=IPR005986 interpro_description=Aspartate-semialdehyde dehydrogenase, bacterial GO=Molecular Function: aspartate-semialdehyde dehydrogenase activity (GO:0004073), Biological Process: methionine biosynthetic process (GO:0009086), Biological Process: threonine biosynthetic process (GO:0009088), Biological Process: oxidation reduction (GO:0055114))
ACD20_2_10

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12703..13602
DNA (900bp) protein (300aa)
dihydrodipicolinate synthase (EC:4.2.1.52)
seg (db=Seg db_id=seg from=55 to=66)
DHDPS_1 (db=PatternScan db_id=PS00665 from=43 to=60 evalue=0.0 interpro_id=IPR020624 interpro_description=Dihydrodipicolinate synthetase, conserved site GO=Biological Process: metabolic process (GO:0008152), Molecular Function: lyase activity (GO:0016829))
DHDPS_2 (db=PatternScan db_id=PS00666 from=138 to=169 evalue=0.0 interpro_id=IPR020625 interpro_description=Dihydrodipicolinate synthetase, active site GO=Biological Process: metabolic process (GO:0008152), Molecular Function: lyase activity (GO:0016829))
ACD20_2_11

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15477..19028
DNA (3552bp) protein (1184aa)
Transcription-repair coupling factor n=1 Tax=Thermincola sp. JR RepID=D5X9J6_9FIRM (db=UNIREF evalue=0.0 bit_score=882.0 identity=40.76 coverage=92.5675675675676)
transcription-repair coupling factor
transcription-repair coupling factor
mfd: transcription-repair coupling factor (db=HMMTigr db_id=TIGR00580 from=157 to=1099 evalue=0.0 interpro_id=IPR004576 interpro_description=Transcription-repair coupling factor GO=Molecular Function: damaged DNA binding (GO:0003684), Molecular Function: helicase activity (GO:0004386), Molecular Function: ATP binding (GO:0005524), Biological Process: DNA repair (GO:0006281))
ACD20_2_12

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19088..20233
DNA (1146bp) protein (382aa)
PpiC-type peptidyl-prolyl cis-trans isomerase
seg (db=Seg db_id=seg from=247 to=262)
coiled-coil (db=Coil db_id=coil from=351 to=379 evalue=NA)
coiled-coil (db=Coil db_id=coil from=218 to=239 evalue=NA)
ACD20_2_13

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20239..20769
DNA (531bp) protein (177aa)
putative D-beta-D-heptose 1-phosphate adenylyltransferase (EC:2.7.7.-)
Protein RfaE, domain II n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KM74_9FIRM (db=UNIREF evalue=7.0e-46 bit_score=186.0 identity=57.62 coverage=84.7457627118644)
rfaE_dom_II: bifunctional protein RfaE, (db=HMMTigr db_id=TIGR02199 from=33 to=176 evalue=2.8e-89 interpro_id=IPR011914 interpro_description=RfaE bifunctional protein, domain II GO=Biological Process: carbohydrate metabolic process (GO:0005975), Molecular Function: phosphotransferase activity, alcohol group as acceptor (GO:0016773), Molecular Function: nucleotidyltransferase activity (GO:0016779))
no description (db=Gene3D db_id=G3DSA:3.40.50.620 from=43 to=174 evalue=4.9e-39 interpro_id=IPR014729 interpro_description=Rossmann-like alpha/beta/alpha sandwich fold)
ACD20_2_14

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20861..23266
DNA (2406bp) protein (802aa)
ppsA; phosphoenolpyruvate synthase (EC:2.7.9.2)
ppsA; phosphoenolpyruvate synthase (EC:2.7.9.2)
Phosphoenolpyruvate synthase n=1 Tax=Methanosphaerula palustris E1-9c RepID=B8GI18_METPE (db=UNIREF evalue=0.0 bit_score=950.0 identity=56.05 coverage=98.8778054862843)
coiled-coil (db=Coil db_id=coil from=532 to=560 evalue=NA)
ACD20_2_15

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23650..23835
DNA (186bp) protein (62aa)
phosphoenolpyruvate synthase
Phosphoenolpyruvate synthase n=1 Tax=Microcoleus chthonoplastes PCC 7420 RepID=B4VNL9_9CYAN (db=UNIREF evalue=3.0e-15 bit_score=84.3 identity=66.67 coverage=90.3225806451613)
PHOSPHOENOLPYRUVATE SYNTHASE (db=HMMPanther db_id=PTHR22931:SF7 from=1 to=51 evalue=1.8e-15)
PHOSPHOENOLPYRUVATE DIKINASE-RELATED (db=HMMPanther db_id=PTHR22931 from=1 to=51 evalue=1.8e-15)
pyruvate to PEP via ATP consumption, acetyl CoA assimilation kelly wrighton (11/15/12)
ACD20_2_16

Not on your lists

24107..25219
DNA (1113bp) protein (371aa)
UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase
seg (db=Seg db_id=seg from=42 to=56)
seg (db=Seg db_id=seg from=352 to=370)
coiled-coil (db=Coil db_id=coil from=342 to=370 evalue=NA)
ACD20_2_17

Not on your lists


25222..26058
DNA (837bp) protein (279aa)
UDP-3-0-acyl N-acetylglucosamine deacetylase
LpxC (db=HMMPfam db_id=PF03331 from=2 to=266 evalue=2.9e-62 interpro_id=IPR004463 interpro_description=UDP-3-O-acyl N-acetylglucosamine deacetylase GO=Molecular Function: UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity (GO:0008759), Biological Process: lipid A biosynthetic process (GO:0009245))
Ribosomal protein S5 domain 2-like (db=superfamily db_id=SSF54211 from=126 to=268 evalue=1.8e-30 interpro_id=IPR020568 interpro_description=Ribosomal protein S5 domain 2-type fold)
no description (db=Gene3D db_id=G3DSA:3.30.1700.10 from=121 to=272 evalue=1.1e-28 interpro_id=IPR011334 interpro_description=UDP-3-O-acyl N-acetylglucosamine deacetylase, C-terminal GO=Molecular Function: UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity (GO:0008759), Biological Process: lipid A biosynthetic process (GO:0009245))
ACD20_2_18

Not on your lists

26037..26492
DNA (456bp) protein (152aa)
3-hydroxyacyl-(acyl-carrier-protein) dehydratase (EC:4.2.1.-)
fabZ: beta-hydroxyacyl-(acyl-carrier-protein (db=HMMTigr db_id=TIGR01750 from=12 to=149 evalue=6.7e-77 interpro_id=IPR010084 interpro_description=Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ GO=Cellular Component: cytoplasm (GO:0005737), Biological Process: fatty acid biosynthetic process (GO:0006633), Molecular Function: hydro-lyase activity (GO:0016836))
no description (db=Gene3D db_id=G3DSA:3.10.129.10 from=13 to=147 evalue=6.4e-49)
Thioesterase/thiol ester dehydrase-isomerase (db=superfamily db_id=SSF54637 from=9 to=151 evalue=6.3e-45)
ACD20_2_19

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26521..27318
DNA (798bp) protein (266aa)
lpxA; acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase (EC:2.3.1.129)
HEXAPEP_TRANSFERASES (db=PatternScan db_id=PS00101 from=128 to=156 evalue=0.0 interpro_id=IPR018357 interpro_description=Hexapeptide transferase, conserved site GO=Molecular Function: transferase activity (GO:0016740))
HEXAPEP_TRANSFERASES (db=PatternScan db_id=PS00101 from=122 to=150 evalue=0.0 interpro_id=IPR018357 interpro_description=Hexapeptide transferase, conserved site GO=Molecular Function: transferase activity (GO:0016740))
Acyl-[acyl-carrier-protein]:UDP-N-acetylglucosamine O-acyltransferase (db=HMMPIR db_id=PIRSF000456 from=1 to=263 evalue=8.3e-135 interpro_id=IPR010137 interpro_description=Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase GO=Biological Process: lipid biosynthetic process (GO:0008610), Molecular Function: acyl-[acyl-carrier-protein]-UDP-N-acetylglucosamine O-acyltransferase activity (GO:0008780))
ACD20_2_20

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comp(27516..28196)
DNA (681bp) protein (227aa)
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EKE02357.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
hypothetical protein alias=ACD20_8688.83588.14G0020,ACD20_8688.83588.14_20,ACD20_C00002G00020 id=17692 tax=ACD20 species=Natranaerobius thermophilus genus=Natranaerobius taxon_order=Natranaerobiales taxon_class=Clostridia phylum=Firmicutes organism_group=Novel_Cyano/Firm organism_desc=Novel_Cyano/Firm
ACD20_2_21

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comp(28361..28999)
DNA (639bp) protein (213aa)
hypothetical protein GobsU_06765 n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C4D9B (db=UNIREF evalue=1.0e-30 bit_score=136.0 identity=52.71 coverage=56.8075117370892)
Rad52/22 double-strand break repair protein
Rad52_Rad22 (db=HMMPfam db_id=PF04098 from=5 to=125 evalue=5.1e-14 interpro_id=IPR007232 interpro_description=Rad52/22 double-strand break repair protein GO=Biological Process: DNA repair (GO:0006281), Biological Process: DNA recombination (GO:0006310))
Uncharacterized protein {ECO:0000313|EMBL:EKE02358.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD20_2_22

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29445..31289
DNA (1845bp) protein (615aa)
hypothetical protein
TPR repeat-containing protein n=1 Tax=Cyanothece sp. PCC 7424 RepID=B7K7N7_CYAP7 (db=UNIREF evalue=1.0e-52 bit_score=211.0 identity=28.13 coverage=88.130081300813)
seg (db=Seg db_id=seg from=82 to=96)
TPR-like (db=superfamily db_id=SSF48452 from=35 to=422 evalue=3.7e-71)
ACD20_2_23

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31318..32565
DNA (1248bp) protein (416aa)
aspartate kinase
aspartate kinase
Aspartokinase n=1 Tax=Desulfotomaculum reducens MI-1 RepID=A4J3P8_DESRM (db=UNIREF evalue=3.0e-122 bit_score=442.0 identity=57.36 coverage=95.9134615384615)
seg (db=Seg db_id=seg from=157 to=166)
ACD20_2_24

Not on your lists

32596..33606
DNA (1011bp) protein (337aa)
metallophosphoesterase
transmembrane_regions (db=TMHMM db_id=tmhmm from=13 to=32)
seg (db=Seg db_id=seg from=324 to=335)
Metallo-dependent phosphatases (db=superfamily db_id=SSF56300 from=40 to=270 evalue=7.8e-35)
ACD20_2_25

Not on your lists

33704..34399
DNA (696bp) protein (232aa)
seg (db=Seg db_id=seg from=92 to=99)
Uncharacterized protein {ECO:0000313|EMBL:EKE02319.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD20_2_26

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comp(34411..35427)
DNA (1017bp) protein (339aa)
hypothetical protein
seg (db=Seg db_id=seg from=322 to=338)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
seg (db=Seg db_id=seg from=6 to=29)
ACD20_2_27

Not on your lists

35567..36280
DNA (714bp) protein (238aa)
hypothetical protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=214 to=236)
transmembrane_regions (db=TMHMM db_id=tmhmm from=188 to=207)
transmembrane_regions (db=TMHMM db_id=tmhmm from=164 to=183)
ACD20_2_28

Not on your lists

comp(36285..38081)
DNA (1797bp) protein (599aa)
hypothetical protein
SLEI family protein n=1 Tax=Tetrahymena thermophila SB210 RepID=Q23WR6_TETTH (db=UNIREF evalue=8.0e-15 bit_score=85.9 identity=25.05 coverage=71.4524207011686)
no description (db=Gene3D db_id=G3DSA:1.25.40.10 from=165 to=367 evalue=1.3e-24 interpro_id=IPR011990 interpro_description=Tetratricopeptide-like helical GO=Molecular Function: binding (GO:0005488))
HCP-like (db=superfamily db_id=SSF81901 from=38 to=299 evalue=3.0e-24)
ACD20_2_29

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38311..38670
DNA (360bp) protein (120aa)
NADH dehydrogenase subunit A
transmembrane_regions (db=TMHMM db_id=tmhmm from=88 to=110)
seg (db=Seg db_id=seg from=97 to=108)
seg (db=Seg db_id=seg from=11 to=29)
Subunit A. NuoA ~ NdhC in cyano kelly wrighton (11/15/12)
membrane. nuoA kelly wrighton (11/15/12)
ACD20_2_30

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38710..39327
DNA (618bp) protein (206aa)
NAD(P)H-quinone oxidoreductase subunit K, chloroplastic n=1 Tax=Chlorokybus atmophyticus RepID=NDHK_CHLAT (db=UNIREF evalue=3.0e-56 bit_score=221.0 identity=61.01 coverage=76.2135922330097)
ndhK; NADH dehydrogenase subunit B (EC:1.6.5.3)
COMPLEX1_20K (db=PatternScan db_id=PS01150 from=112 to=128 evalue=0.0 interpro_id=IPR006138 interpro_description=NADH:ubiquinone oxidoreductase, 20kDa subunit GO=Molecular Function: NADH dehydrogenase (ubiquinone) activity (GO:0008137), Molecular Function: quinone binding (GO:0048038), Molecular Function: 4 iron, 4 sulfur cluster binding (GO:0051539), Biological Process: oxidation reduction (GO:0055114))
nuoB_fam: NADH-quinone oxidoreductase, B sub (db=HMMTigr db_id=TIGR01957 from=2 to=147 evalue=2.6e-106 interpro_id=IPR006138 interpro_description=NADH:ubiquinone oxidoreductase, 20kDa subunit GO=Molecular Function: NADH dehydrogenase (ubiquinone) activity (GO:0008137), Molecular Function: quinone binding (GO:0048038), Molecular Function: 4 iron, 4 sulfur cluster binding (GO:0051539), Biological Process: oxidation reduction (GO:0055114))
Membrane/Cyto target. Subunit B. cyanobacteria best hits. cyano ndh NdhK~NuoB kelly wrighton (11/15/12)
Displaying items 1-30 of 69 in total

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