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ACD20_4

Alias: ACD20_33459.44052.13

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Displaying items 31-43 of 43 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD20_4_31

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34221..34853
DNA (633bp) protein (211aa)
ruvA; Holliday junction DNA helicase RuvA
Holliday junction ATP-dependent DNA helicase ruvA n=1 Tax=Synechococcus sp. PCC 7335 RepID=B4WL13_9SYNE (db=UNIREF evalue=6.0e-30 bit_score=134.0 identity=39.62 coverage=97.6303317535545)
seg (db=Seg db_id=seg from=177 to=189)
ruvA: Holliday junction DNA helicase RuvA (db=HMMTigr db_id=TIGR00084 from=1 to=208 evalue=6.0e-35 interpro_id=IPR000085 interpro_description=Bacterial DNA recombination protein RuvA GO=Molecular Function: DNA helicase activity (GO:0003678), Biological Process: DNA repair (GO:0006281), Biological Process: DNA recombination (GO:0006310))
ACD20_4_32

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comp(34900..35112)
DNA (213bp) protein (71aa)
PROKAR_LIPOPROTEIN (db=ProfileScan db_id=PS51257 from=1 to=25 evalue=5.0)
Uncharacterized protein {ECO:0000313|EMBL:EKE03319.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD20_4_33

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comp(35279..36535)
DNA (1257bp) protein (419aa)
fabF; 3-oxoacyl-ACP synthase II (EC:2.3.1.41)
fabF; 3-oxoacyl-ACP synthase II (EC:2.3.1.41)
3-oxoacyl-[acyl-carrier-protein] synthase II n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0ZFP1_BREBN (db=UNIREF evalue=4.0e-137 bit_score=491.0 identity=58.35 coverage=95.2267303102625)
seg (db=Seg db_id=seg from=6 to=17)
ACD20_4_34

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comp(36561..36797)
DNA (237bp) protein (79aa)
Acyl carrier protein (ACP)
seg (db=Seg db_id=seg from=47 to=61)
PHOSPHOPANTETHEINE (db=PatternScan db_id=PS00012 from=32 to=47 evalue=0.0 interpro_id=IPR006162 interpro_description=Phosphopantetheine attachment site GO=Molecular Function: phosphopantetheine binding (GO:0031177))
acyl_carrier: acyl carrier protein (db=HMMTigr db_id=TIGR00517 from=1 to=77 evalue=1.2e-35 interpro_id=IPR003231 interpro_description=Acyl carrier protein (ACP) GO=Molecular Function: acyl carrier activity (GO:0000036), Biological Process: fatty acid biosynthetic process (GO:0006633))
ACD20_4_35

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comp(37052..37786)
DNA (735bp) protein (245aa)
fabG; 3-ketoacyl-ACP reductase
ADH_SHORT (db=PatternScan db_id=PS00061 from=143 to=171 evalue=0.0 interpro_id=IPR020904 interpro_description=Short-chain dehydrogenase/reductase, conserved site GO=Molecular Function: oxidoreductase activity (GO:0016491))
SHORT-CHAIN DEHYDROGENASES/REDUCTASE FAMILY MEMBER (db=HMMPanther db_id=PTHR19410 from=6 to=240 evalue=5.8e-131 interpro_id=IPR002198 interpro_description=Short-chain dehydrogenase/reductase SDR GO=Biological Process: metabolic process (GO:0008152), Molecular Function: oxidoreductase activity (GO:0016491))
3-OXOACYL-[ACYL-CARRIER-PROTEIN] REDUCTASE (db=HMMPanther db_id=PTHR19410:SF87 from=6 to=240 evalue=5.8e-131)
could this convert acetoacetyl to HBR for butyrate synthesis? kelly wrighton (11/15/12)
ACD20_4_36

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comp(37803..38744)
DNA (942bp) protein (314aa)
Malonyl CoA-acyl carrier protein transacylase n=1 Tax=Candidatus Desulforudis audaxviator MP104C RepID=B1I2D0_DESAP (db=UNIREF evalue=2.0e-82 bit_score=309.0 identity=48.06 coverage=97.1337579617834)
fabD; malonyl CoA-acyl carrier protein transacylase FabD (EC:2.3.1.39)
fabD; malonyl CoA-acyl carrier protein transacylase FabD (EC:2.3.1.39)
fabD: malonyl CoA-acyl carrier protein trans (db=HMMTigr db_id=TIGR00128 from=2 to=289 evalue=9.2e-136 interpro_id=IPR004410 interpro_description=Malonyl CoA-acyl carrier protein transacylase GO=Molecular Function: [acyl-carrier-protein] S-malonyltransferase activity (GO:0004314), Biological Process: fatty acid biosynthetic process (GO:0006633))
ACD20_4_37

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comp(38764..39783)
DNA (1020bp) protein (340aa)
3-oxoacyl-ACP synthase
3-oxoacyl-ACP synthase
3-oxoacyl-(Acyl-carrier-protein) synthase III n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6IVR8_9BACL (db=UNIREF evalue=7.0e-82 bit_score=307.0 identity=50.46 coverage=95.8823529411765)
seg (db=Seg db_id=seg from=106 to=117)
ACD20_4_38

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comp(39780..40787)
DNA (1008bp) protein (336aa)
PlsX; putative glycerol-3-phosphate acyltransferase PlsX
seg (db=Seg db_id=seg from=98 to=113)
Phospholipid biosynthesis protein, PlsX type (db=HMMPIR db_id=PIRSF002465 from=1 to=335 evalue=2.1e-151 interpro_id=IPR012281 interpro_description=Phospholipid biosynthesis protein, PlsX like GO=Biological Process: fatty acid biosynthetic process (GO:0006633))
plsX: fatty acid/phospholipid synthesis prot (db=HMMTigr db_id=TIGR00182 from=3 to=334 evalue=7.6e-145 interpro_id=IPR012281 interpro_description=Phospholipid biosynthesis protein, PlsX like GO=Biological Process: fatty acid biosynthetic process (GO:0006633))
ACD20_4_39

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comp(40794..40982)
DNA (189bp) protein (63aa)
hypothetical protein
Ribosomal_L32p (db=HMMPfam db_id=PF01783 from=2 to=52 evalue=7.3e-19 interpro_id=IPR002677 interpro_description=Ribosomal protein L32p GO=Molecular Function: structural constituent of ribosome (GO:0003735), Biological Process: translation (GO:0006412), Cellular Component: large ribosomal subunit (GO:0015934))
rpmF_bact: ribosomal protein L32 (db=HMMTigr db_id=TIGR01031 from=2 to=49 evalue=2.6e-17 interpro_id=IPR002677 interpro_description=Ribosomal protein L32p GO=Molecular Function: structural constituent of ribosome (GO:0003735), Biological Process: translation (GO:0006412), Cellular Component: large ribosomal subunit (GO:0015934))
Zn-binding ribosomal proteins (db=superfamily db_id=SSF57829 from=2 to=57 evalue=9.7e-15 interpro_id=IPR011332 interpro_description=Ribosomal protein, zinc-binding domain GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
ACD20_4_40

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comp(41007..41501)
DNA (495bp) protein (165aa)
hypothetical protein
DUF177 (db=HMMPfam db_id=PF02620 from=41 to=148 evalue=4.3e-19 interpro_id=IPR003772 interpro_description=Protein of unknown function DUF177)
hypothetical protein; K07040 alias=ACD20_C00004G00040,ACD20_33459.44052.13G0040,ACD20_33459.44052.13_40 id=17758 tax=ACD20 species=Acaryochloris marina genus=Acaryochloris taxon_order=Chroococcales taxon_class=unknown phylum=Cyanobacteria organism_group=Novel_Cyano/Firm organism_desc=Novel_Cyano/Firm
Uncharacterized protein {ECO:0000313|EMBL:EKE03327.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD20_4_41

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comp(41813..42283)
DNA (471bp) protein (157aa)
hypothetical protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=12 to=31)
seg (db=Seg db_id=seg from=13 to=27)
TPR-like (db=superfamily db_id=SSF48452 from=28 to=156 evalue=5.8e-28)
ACD20_4_42

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42418..42918
DNA (501bp) protein (167aa)
leuD; 3-isopropylmalate dehydratase small subunit (EC:4.2.1.33)
leud: 3-isopropylmalate dehydratase, small (db=HMMTigr db_id=TIGR02084 from=7 to=162 evalue=3.3e-90 interpro_id=IPR011824 interpro_description=3-isopropylmalate dehydratase, small subunit, bacterial-like GO=Molecular Function: 3-isopropylmalate dehydratase activity (GO:0003861), Biological Process: leucine biosynthetic process (GO:0009098), Cellular Component: 3-isopropylmalate dehydratase complex (GO:0009316))
LEUD_arch: 3-isopropylmalate dehydratase, s (db=HMMTigr db_id=TIGR02087 from=7 to=163 evalue=1.8e-81 interpro_id=IPR011827 interpro_description=3-isopropylmalate dehydratase, small subunit, subgroup GO=Molecular Function: 3-isopropylmalate dehydratase activity (GO:0003861), Biological Process: leucine biosynthetic process (GO:0009098), Cellular Component: 3-isopropylmalate dehydratase complex (GO:0009316))
LeuD/IlvD-like (db=superfamily db_id=SSF52016 from=1 to=164 evalue=2.7e-50 interpro_id=IPR015928 interpro_description=Aconitase/3-isopropylmalate dehydratase, swivel GO=Biological Process: metabolic process (GO:0008152))
ACD20_4_43

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42960..44045
DNA (1086bp) protein (362aa)
3-isopropylmalate dehydrogenase (EC:1.1.1.85)
3-isopropylmalate dehydrogenase (EC:1.1.1.85)
3-isopropylmalate dehydrogenase n=1 Tax=Desulfovibrio salexigens DSM 2638 RepID=C6BSH1_DESAD (db=UNIREF evalue=1.0e-125 bit_score=452.0 identity=64.39 coverage=96.4088397790055)
seg (db=Seg db_id=seg from=255 to=271)
Displaying items 31-43 of 43 in total

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